data_7T8V # _model_server_result.job_id P1k7B9nfcdjwJRiNeatSAw _model_server_result.datetime_utc '2024-11-13 12:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":909}' # _entry.id 7T8V # _exptl.entry_id 7T8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T8V _cell.length_a 133.631 _cell.length_b 178.003 _cell.length_c 179.653 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,Z 1 1 B,P,Q,R,S,T,U,V,W,X,Y,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 W N N ? 5 X N N ? 5 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 656 A CYS 654 1_555 A SG CYS 670 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 656 B CYS 654 1_555 B SG CYS 670 B CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale1 A ND2 ASN 47 A ASN 45 1_555 D C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 7T8V _atom_sites.fract_transf_matrix[1][1] 0.007483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 W9Y A 1 901 901 W9Y LIG . D 3 NAG A 1 902 1001 NAG NAG . E 4 SO4 A 1 903 1 SO4 SO4 . F 4 SO4 A 1 904 5 SO4 SO4 . G 4 SO4 A 1 905 6 SO4 SO4 . H 4 SO4 A 1 906 7 SO4 SO4 . I 4 SO4 A 1 907 8 SO4 SO4 . J 4 SO4 A 1 908 9 SO4 SO4 . K 4 SO4 A 1 909 10 SO4 SO4 . L 4 SO4 A 1 910 11 SO4 SO4 . M 4 SO4 A 1 911 12 SO4 SO4 . N 4 SO4 A 1 912 13 SO4 SO4 . O 5 GOL A 1 913 2 GOL GOL . P 2 W9Y B 1 901 901 W9Y LIG . Q 6 BTB B 1 902 1001 BTB BTB . R 4 SO4 B 1 903 2 SO4 SO4 . S 4 SO4 B 1 904 3 SO4 SO4 . T 4 SO4 B 1 905 4 SO4 SO4 . U 4 SO4 B 1 906 14 SO4 SO4 . V 4 SO4 B 1 907 15 SO4 SO4 . W 5 GOL B 1 908 1 GOL GOL . X 5 GOL B 1 909 3 GOL GOL . Y 5 GOL B 1 910 4 GOL GOL . Z 7 HOH A 1 1001 53 HOH HOH . Z 7 HOH A 2 1002 160 HOH HOH . Z 7 HOH A 3 1003 167 HOH HOH . Z 7 HOH A 4 1004 3 HOH HOH . Z 7 HOH A 5 1005 81 HOH HOH . Z 7 HOH A 6 1006 61 HOH HOH . Z 7 HOH A 7 1007 5 HOH HOH . Z 7 HOH A 8 1008 94 HOH HOH . Z 7 HOH A 9 1009 117 HOH HOH . Z 7 HOH A 10 1010 68 HOH HOH . Z 7 HOH A 11 1011 161 HOH HOH . Z 7 HOH A 12 1012 76 HOH HOH . Z 7 HOH A 13 1013 90 HOH HOH . Z 7 HOH A 14 1014 144 HOH HOH . Z 7 HOH A 15 1015 34 HOH HOH . Z 7 HOH A 16 1016 159 HOH HOH . Z 7 HOH A 17 1017 39 HOH HOH . Z 7 HOH A 18 1018 27 HOH HOH . Z 7 HOH A 19 1019 25 HOH HOH . Z 7 HOH A 20 1020 19 HOH HOH . Z 7 HOH A 21 1021 45 HOH HOH . Z 7 HOH A 22 1022 86 HOH HOH . Z 7 HOH A 23 1023 95 HOH HOH . Z 7 HOH A 24 1024 75 HOH HOH . Z 7 HOH A 25 1025 1 HOH HOH . Z 7 HOH A 26 1026 157 HOH HOH . Z 7 HOH A 27 1027 87 HOH HOH . Z 7 HOH A 28 1028 63 HOH HOH . Z 7 HOH A 29 1029 48 HOH HOH . Z 7 HOH A 30 1030 147 HOH HOH . Z 7 HOH A 31 1031 128 HOH HOH . Z 7 HOH A 32 1032 93 HOH HOH . Z 7 HOH A 33 1033 50 HOH HOH . Z 7 HOH A 34 1034 17 HOH HOH . Z 7 HOH A 35 1035 78 HOH HOH . Z 7 HOH A 36 1036 115 HOH HOH . Z 7 HOH A 37 1037 84 HOH HOH . Z 7 HOH A 38 1038 18 HOH HOH . Z 7 HOH A 39 1039 104 HOH HOH . Z 7 HOH A 40 1040 47 HOH HOH . Z 7 HOH A 41 1041 54 HOH HOH . Z 7 HOH A 42 1042 24 HOH HOH . Z 7 HOH A 43 1043 35 HOH HOH . Z 7 HOH A 44 1044 22 HOH HOH . Z 7 HOH A 45 1045 126 HOH HOH . Z 7 HOH A 46 1046 127 HOH HOH . Z 7 HOH A 47 1047 42 HOH HOH . Z 7 HOH A 48 1048 155 HOH HOH . Z 7 HOH A 49 1049 37 HOH HOH . Z 7 HOH A 50 1050 52 HOH HOH . Z 7 HOH A 51 1051 133 HOH HOH . Z 7 HOH A 52 1052 124 HOH HOH . Z 7 HOH A 53 1053 69 HOH HOH . Z 7 HOH A 54 1054 148 HOH HOH . Z 7 HOH A 55 1055 41 HOH HOH . Z 7 HOH A 56 1056 158 HOH HOH . Z 7 HOH A 57 1057 92 HOH HOH . Z 7 HOH A 58 1058 96 HOH HOH . Z 7 HOH A 59 1059 33 HOH HOH . Z 7 HOH A 60 1060 28 HOH HOH . Z 7 HOH A 61 1061 20 HOH HOH . Z 7 HOH A 62 1062 153 HOH HOH . Z 7 HOH A 63 1063 4 HOH HOH . Z 7 HOH A 64 1064 71 HOH HOH . Z 7 HOH A 65 1065 97 HOH HOH . Z 7 HOH A 66 1066 74 HOH HOH . Z 7 HOH A 67 1067 118 HOH HOH . Z 7 HOH A 68 1068 88 HOH HOH . Z 7 HOH A 69 1069 140 HOH HOH . Z 7 HOH A 70 1070 142 HOH HOH . Z 7 HOH A 71 1071 9 HOH HOH . Z 7 HOH A 72 1072 58 HOH HOH . Z 7 HOH A 73 1073 130 HOH HOH . Z 7 HOH A 74 1074 113 HOH HOH . Z 7 HOH A 75 1075 31 HOH HOH . Z 7 HOH A 76 1076 121 HOH HOH . Z 7 HOH A 77 1077 141 HOH HOH . Z 7 HOH A 78 1078 131 HOH HOH . Z 7 HOH A 79 1079 170 HOH HOH . Z 7 HOH A 80 1080 44 HOH HOH . Z 7 HOH A 81 1081 14 HOH HOH . Z 7 HOH A 82 1082 154 HOH HOH . Z 7 HOH A 83 1083 134 HOH HOH . Z 7 HOH A 84 1084 173 HOH HOH . Z 7 HOH A 85 1085 136 HOH HOH . AA 7 HOH B 1 1001 156 HOH HOH . AA 7 HOH B 2 1002 10 HOH HOH . AA 7 HOH B 3 1003 85 HOH HOH . AA 7 HOH B 4 1004 146 HOH HOH . AA 7 HOH B 5 1005 38 HOH HOH . AA 7 HOH B 6 1006 73 HOH HOH . AA 7 HOH B 7 1007 98 HOH HOH . AA 7 HOH B 8 1008 32 HOH HOH . AA 7 HOH B 9 1009 2 HOH HOH . AA 7 HOH B 10 1010 13 HOH HOH . AA 7 HOH B 11 1011 16 HOH HOH . AA 7 HOH B 12 1012 31 HOH HOH . AA 7 HOH B 13 1013 36 HOH HOH . AA 7 HOH B 14 1014 163 HOH HOH . AA 7 HOH B 15 1015 145 HOH HOH . AA 7 HOH B 16 1016 83 HOH HOH . AA 7 HOH B 17 1017 143 HOH HOH . AA 7 HOH B 18 1018 65 HOH HOH . AA 7 HOH B 19 1019 29 HOH HOH . AA 7 HOH B 20 1020 51 HOH HOH . AA 7 HOH B 21 1021 40 HOH HOH . AA 7 HOH B 22 1022 59 HOH HOH . AA 7 HOH B 23 1023 26 HOH HOH . AA 7 HOH B 24 1024 70 HOH HOH . AA 7 HOH B 25 1025 77 HOH HOH . AA 7 HOH B 26 1026 103 HOH HOH . AA 7 HOH B 27 1027 114 HOH HOH . AA 7 HOH B 28 1028 139 HOH HOH . AA 7 HOH B 29 1029 166 HOH HOH . AA 7 HOH B 30 1030 30 HOH HOH . AA 7 HOH B 31 1031 108 HOH HOH . AA 7 HOH B 32 1032 60 HOH HOH . AA 7 HOH B 33 1033 89 HOH HOH . AA 7 HOH B 34 1034 8 HOH HOH . AA 7 HOH B 35 1035 56 HOH HOH . AA 7 HOH B 36 1036 151 HOH HOH . AA 7 HOH B 37 1037 7 HOH HOH . AA 7 HOH B 38 1038 67 HOH HOH . AA 7 HOH B 39 1039 150 HOH HOH . AA 7 HOH B 40 1040 57 HOH HOH . AA 7 HOH B 41 1041 169 HOH HOH . AA 7 HOH B 42 1042 129 HOH HOH . AA 7 HOH B 43 1043 149 HOH HOH . AA 7 HOH B 44 1044 106 HOH HOH . AA 7 HOH B 45 1045 123 HOH HOH . AA 7 HOH B 46 1046 82 HOH HOH . AA 7 HOH B 47 1047 55 HOH HOH . AA 7 HOH B 48 1048 46 HOH HOH . AA 7 HOH B 49 1049 137 HOH HOH . AA 7 HOH B 50 1050 62 HOH HOH . AA 7 HOH B 51 1051 165 HOH HOH . AA 7 HOH B 52 1052 72 HOH HOH . AA 7 HOH B 53 1053 162 HOH HOH . AA 7 HOH B 54 1054 204 HOH HOH . AA 7 HOH B 55 1055 66 HOH HOH . AA 7 HOH B 56 1056 171 HOH HOH . AA 7 HOH B 57 1057 10 HOH HOH . AA 7 HOH B 58 1058 105 HOH HOH . AA 7 HOH B 59 1059 15 HOH HOH . AA 7 HOH B 60 1060 138 HOH HOH . AA 7 HOH B 61 1061 9 HOH HOH . AA 7 HOH B 62 1062 12 HOH HOH . AA 7 HOH B 63 1063 21 HOH HOH . AA 7 HOH B 64 1064 80 HOH HOH . AA 7 HOH B 65 1065 11 HOH HOH . AA 7 HOH B 66 1066 111 HOH HOH . AA 7 HOH B 67 1067 102 HOH HOH . AA 7 HOH B 68 1068 79 HOH HOH . AA 7 HOH B 69 1069 6 HOH HOH . AA 7 HOH B 70 1070 152 HOH HOH . AA 7 HOH B 71 1071 172 HOH HOH . AA 7 HOH B 72 1072 119 HOH HOH . AA 7 HOH B 73 1073 120 HOH HOH . AA 7 HOH B 74 1074 14 HOH HOH . AA 7 HOH B 75 1075 49 HOH HOH . AA 7 HOH B 76 1076 100 HOH HOH . AA 7 HOH B 77 1077 64 HOH HOH . AA 7 HOH B 78 1078 116 HOH HOH . AA 7 HOH B 79 1079 110 HOH HOH . AA 7 HOH B 80 1080 99 HOH HOH . AA 7 HOH B 81 1081 23 HOH HOH . AA 7 HOH B 82 1082 122 HOH HOH . AA 7 HOH B 83 1083 91 HOH HOH . AA 7 HOH B 84 1084 109 HOH HOH . AA 7 HOH B 85 1085 87 HOH HOH . AA 7 HOH B 86 1086 101 HOH HOH . AA 7 HOH B 87 1087 112 HOH HOH . AA 7 HOH B 88 1088 107 HOH HOH . AA 7 HOH B 89 1089 125 HOH HOH . AA 7 HOH B 90 1090 44 HOH HOH . AA 7 HOH B 91 1091 71 HOH HOH . AA 7 HOH B 92 1092 43 HOH HOH . AA 7 HOH B 93 1093 17 HOH HOH . AA 7 HOH B 94 1094 168 HOH HOH . AA 7 HOH B 95 1095 135 HOH HOH . AA 7 HOH B 96 1096 164 HOH HOH . AA 7 HOH B 97 1097 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . X 5 -18.7 -53.232 -33.434 1 55.91 ? C1 GOL 909 B 1 HETATM 2 O O1 GOL . . . X 5 -19.422 -52.479 -32.468 1 87.75 ? O1 GOL 909 B 1 HETATM 3 C C2 GOL . . . X 5 -19.631 -53.961 -34.346 1 52.35 ? C2 GOL 909 B 1 HETATM 4 O O2 GOL . . . X 5 -20.672 -53.087 -34.783 1 64.99 ? O2 GOL 909 B 1 HETATM 5 C C3 GOL . . . X 5 -20.22 -55.179 -33.715 1 54.41 ? C3 GOL 909 B 1 HETATM 6 O O3 GOL . . . X 5 -19.867 -56.353 -34.428 1 55.58 ? O3 GOL 909 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #