data_7T92 # _model_server_result.job_id UcbClYqZGzHxZTG3aToGEQ _model_server_result.datetime_utc '2024-10-16 23:21:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":504}' # _entry.id 7T92 # _exptl.entry_id 7T92 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T92 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 N N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 Y N N ? 7 Z N N ? 7 AA N N ? 7 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 367 B CYS 412 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A SG CYS 370 B CYS 415 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A SG CYS 387 B CYS 432 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A SG CYS 390 B CYS 435 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 B SG CYS 265 A CYS 270 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 B SG CYS 268 A CYS 273 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 B SG CYS 306 A CYS 311 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 B SG CYS 308 A CYS 313 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 B SG CYS 311 A CYS 316 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc10 B SG CYS 314 A CYS 319 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc11 B SG CYS 329 A CYS 334 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc12 B SG CYS 332 A CYS 337 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc13 C SG CYS 402 C CYS 402 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc14 C SG CYS 405 C CYS 405 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc15 C SG CYS 417 C CYS 417 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc16 C ND1 HIS 419 C HIS 419 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc17 C SG CYS 422 C CYS 422 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc18 C SG CYS 425 C CYS 425 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc19 C SG CYS 436 C CYS 436 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc20 C SG CYS 439 C CYS 439 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 248 n n O3 P1 LBN sing 249 n n O2 C9 LBN sing 250 n n O2 P1 LBN sing 251 n n C9 C6 LBN sing 252 n n O4 P1 LBN doub 253 n n P1 O1 LBN sing 254 n n C6 N1 LBN sing 255 n n N1 C15 LBN sing 256 n n N1 C18 LBN sing 257 n n O1 C1 LBN sing 258 n n C2 C1 LBN sing 259 n n C2 C3 LBN sing 260 n n C2 O7 LBN sing 261 n n C3 O5 LBN sing 262 n n O6 C25 LBN doub 263 n n O5 C25 LBN sing 264 n n O7 C34 LBN sing 265 n n C25 C26 LBN sing 266 n n C34 C35 LBN sing 267 n n C34 O8 LBN doub 268 n n C26 C27 LBN sing 269 n n C35 C36 LBN sing 270 n n C27 C28 LBN sing 271 n n C36 C37 LBN sing 272 n n C28 C29 LBN sing 273 n n C37 C38 LBN sing 274 n n C29 C30 LBN sing 275 n n C39 C38 LBN sing 276 n n C39 C40 LBN sing 277 n n C41 C40 LBN sing 278 n n C41 C42 LBN sing 279 n n C30 C31 LBN sing 280 n n C42 C5 LBN doub 281 z n C31 C32 LBN sing 282 n n C5 C8 LBN sing 283 n n C8 C11 LBN sing 284 n n C32 C33 LBN sing 285 n n C11 C14 LBN sing 286 n n C33 C4 LBN sing 287 n n C14 C17 LBN sing 288 n n C4 C7 LBN sing 289 n n C17 C20 LBN sing 290 n n C7 C10 LBN sing 291 n n C20 C22 LBN sing 292 n n C10 C13 LBN sing 293 n n C22 C23 LBN sing 294 n n C13 C16 LBN sing 295 n n C23 C24 LBN sing 296 n n C16 C19 LBN sing 297 n n C19 C21 LBN sing 298 n n C1 H1 LBN sing 299 n n C1 H2 LBN sing 300 n n C2 H3 LBN sing 301 n n C3 H4 LBN sing 302 n n C3 H5 LBN sing 303 n n C4 H6 LBN sing 304 n n C4 H7 LBN sing 305 n n C5 H8 LBN sing 306 n n C6 H9 LBN sing 307 n n C6 H10 LBN sing 308 n n C7 H11 LBN sing 309 n n C7 H12 LBN sing 310 n n C8 H13 LBN sing 311 n n C8 H14 LBN sing 312 n n C9 H15 LBN sing 313 n n C9 H16 LBN sing 314 n n C10 H17 LBN sing 315 n n C10 H18 LBN sing 316 n n C11 H19 LBN sing 317 n n C12 H20 LBN sing 318 n n C12 H21 LBN sing 319 n n C12 H22 LBN sing 320 n n C13 H23 LBN sing 321 n n C13 H24 LBN sing 322 n n C14 H25 LBN sing 323 n n C15 H26 LBN sing 324 n n C15 H27 LBN sing 325 n n C15 H28 LBN sing 326 n n C16 H30 LBN sing 327 n n C16 H31 LBN sing 328 n n C17 H32 LBN sing 329 n n C17 H33 LBN sing 330 n n C18 H34 LBN sing 331 n n C18 H35 LBN sing 332 n n C18 H36 LBN sing 333 n n C19 H37 LBN sing 334 n n C19 H38 LBN sing 335 n n C20 H39 LBN sing 336 n n C20 H40 LBN sing 337 n n C21 H41 LBN sing 338 n n C21 H42 LBN sing 339 n n C21 H43 LBN sing 340 n n C22 H44 LBN sing 341 n n C22 H45 LBN sing 342 n n C23 H46 LBN sing 343 n n C23 H47 LBN sing 344 n n C24 H48 LBN sing 345 n n C24 H49 LBN sing 346 n n C24 H50 LBN sing 347 n n C26 H51 LBN sing 348 n n C26 H52 LBN sing 349 n n C27 H53 LBN sing 350 n n C27 H54 LBN sing 351 n n C28 H55 LBN sing 352 n n C28 H56 LBN sing 353 n n C29 H57 LBN sing 354 n n C29 H58 LBN sing 355 n n C30 H59 LBN sing 356 n n C30 H60 LBN sing 357 n n C31 H61 LBN sing 358 n n C31 H62 LBN sing 359 n n C32 H63 LBN sing 360 n n C32 H64 LBN sing 361 n n C33 H65 LBN sing 362 n n C33 H66 LBN sing 363 n n C35 H67 LBN sing 364 n n C35 H68 LBN sing 365 n n C36 H69 LBN sing 366 n n C36 H70 LBN sing 367 n n C37 H71 LBN sing 368 n n C37 H72 LBN sing 369 n n C38 H73 LBN sing 370 n n C38 H74 LBN sing 371 n n C39 H75 LBN sing 372 n n C40 H76 LBN sing 373 n n C41 H77 LBN sing 374 n n C41 H78 LBN sing 375 n n C42 H79 LBN sing 376 n n C11 H80 LBN sing 377 n n C14 H81 LBN sing 378 n n C39 H82 LBN sing 379 n n C40 H83 LBN sing 380 n n # _atom_sites.entry_id 7T92 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN B 1 501 501 ZN ZN . G 7 LBN B 1 502 502 LBN LBN . H 7 LBN B 1 503 503 LBN LBN . I 7 LBN B 1 504 504 LBN LBN . J 7 LBN B 1 505 505 LBN LBN . K 7 LBN B 1 506 506 LBN LBN . L 6 ZN A 1 401 401 ZN ZN . M 6 ZN A 1 402 402 ZN ZN . N 7 LBN A 1 403 403 LBN LBN . O 8 CLR A 1 404 404 CLR CLR . P 8 CLR A 1 405 405 CLR CLR . Q 7 LBN A 1 406 406 LBN LBN . R 7 LBN A 1 407 407 LBN LBN . S 7 LBN A 1 408 408 LBN LBN . T 7 LBN A 1 409 409 LBN LBN . U 7 LBN A 1 410 410 LBN LBN . V 6 ZN C 1 501 501 ZN ZN . W 6 ZN C 1 502 502 ZN ZN . X 8 CLR C 1 503 503 CLR CLR . Y 7 LBN C 1 504 504 LBN LBN . Z 7 LBN C 1 505 505 LBN LBN . AA 7 LBN C 1 506 506 LBN LBN . BA 7 LBN C 1 507 507 LBN LBN . CA 8 CLR C 1 508 508 CLR CLR . DA 8 CLR C 1 509 509 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 LBN . . . Y 7 120.226 106.092 133.339 1 29.63 ? C4 LBN 504 C 1 HETATM 2 C C7 LBN . . . Y 7 119.478 105.761 134.629 1 29.63 ? C7 LBN 504 C 1 HETATM 3 C C10 LBN . . . Y 7 119.783 106.807 135.701 1 29.63 ? C10 LBN 504 C 1 HETATM 4 C C13 LBN . . . Y 7 118.617 106.879 136.686 1 29.63 ? C13 LBN 504 C 1 HETATM 5 C C16 LBN . . . Y 7 118.77 108.107 137.579 1 29.63 ? C16 LBN 504 C 1 HETATM 6 C C25 LBN . . . Y 7 123.869 101.734 124.148 1 29.63 ? C25 LBN 504 C 1 HETATM 7 O O5 LBN . . . Y 7 125.076 101.83 123.449 1 29.63 ? O5 LBN 504 C 1 HETATM 8 C C26 LBN . . . Y 7 123.876 101.42 125.643 1 29.63 ? C26 LBN 504 C 1 HETATM 9 O O6 LBN . . . Y 7 122.845 101.888 123.578 1 29.63 ? O6 LBN 504 C 1 HETATM 10 C C27 LBN . . . Y 7 122.627 101.998 126.305 1 29.63 ? C27 LBN 504 C 1 HETATM 11 C C28 LBN . . . Y 7 122.96 102.462 127.722 1 29.63 ? C28 LBN 504 C 1 HETATM 12 C C29 LBN . . . Y 7 121.727 102.305 128.609 1 29.63 ? C29 LBN 504 C 1 HETATM 13 C C30 LBN . . . Y 7 121.928 103.076 129.913 1 29.63 ? C30 LBN 504 C 1 HETATM 14 C C31 LBN . . . Y 7 120.608 103.682 130.386 1 29.63 ? C31 LBN 504 C 1 HETATM 15 C C32 LBN . . . Y 7 120.899 104.917 131.235 1 29.63 ? C32 LBN 504 C 1 HETATM 16 C C33 LBN . . . Y 7 119.771 105.133 132.24 1 29.63 ? C33 LBN 504 C 1 HETATM 17 H H6 LBN . . . Y 7 121.179 105.994 133.486 1 29.63 ? H6 LBN 504 C 1 HETATM 18 H H7 LBN . . . Y 7 120.03 107.004 133.074 1 29.63 ? H7 LBN 504 C 1 HETATM 19 H H11 LBN . . . Y 7 119.754 104.887 134.945 1 29.63 ? H11 LBN 504 C 1 HETATM 20 H H12 LBN . . . Y 7 118.525 105.751 134.45 1 29.63 ? H12 LBN 504 C 1 HETATM 21 H H17 LBN . . . Y 7 119.908 107.673 135.283 1 29.63 ? H17 LBN 504 C 1 HETATM 22 H H18 LBN . . . Y 7 120.591 106.556 136.175 1 29.63 ? H18 LBN 504 C 1 HETATM 23 H H23 LBN . . . Y 7 118.608 106.08 137.235 1 29.63 ? H23 LBN 504 C 1 HETATM 24 H H24 LBN . . . Y 7 117.782 106.943 136.196 1 29.63 ? H24 LBN 504 C 1 HETATM 25 H H30 LBN . . . Y 7 119.024 108.872 137.039 1 29.63 ? H30 LBN 504 C 1 HETATM 26 H H31 LBN . . . Y 7 119.455 107.939 138.245 1 29.63 ? H31 LBN 504 C 1 HETATM 27 H H51 LBN . . . Y 7 124.667 101.807 126.049 1 29.63 ? H51 LBN 504 C 1 HETATM 28 H H52 LBN . . . Y 7 123.888 100.458 125.768 1 29.63 ? H52 LBN 504 C 1 HETATM 29 H H53 LBN . . . Y 7 121.937 101.317 126.342 1 29.63 ? H53 LBN 504 C 1 HETATM 30 H H54 LBN . . . Y 7 122.307 102.753 125.788 1 29.63 ? H54 LBN 504 C 1 HETATM 31 H H55 LBN . . . Y 7 123.231 103.393 127.699 1 29.63 ? H55 LBN 504 C 1 HETATM 32 H H56 LBN . . . Y 7 123.684 101.923 128.078 1 29.63 ? H56 LBN 504 C 1 HETATM 33 H H57 LBN . . . Y 7 121.593 101.365 128.809 1 29.63 ? H57 LBN 504 C 1 HETATM 34 H H58 LBN . . . Y 7 120.951 102.647 128.139 1 29.63 ? H58 LBN 504 C 1 HETATM 35 H H59 LBN . . . Y 7 122.572 103.788 129.771 1 29.63 ? H59 LBN 504 C 1 HETATM 36 H H60 LBN . . . Y 7 122.264 102.472 130.593 1 29.63 ? H60 LBN 504 C 1 HETATM 37 H H61 LBN . . . Y 7 120.125 103.028 130.915 1 29.63 ? H61 LBN 504 C 1 HETATM 38 H H62 LBN . . . Y 7 120.07 103.941 129.622 1 29.63 ? H62 LBN 504 C 1 HETATM 39 H H63 LBN . . . Y 7 120.971 105.694 130.659 1 29.63 ? H63 LBN 504 C 1 HETATM 40 H H64 LBN . . . Y 7 121.736 104.789 131.709 1 29.63 ? H64 LBN 504 C 1 HETATM 41 H H65 LBN . . . Y 7 119.002 105.509 131.784 1 29.63 ? H65 LBN 504 C 1 HETATM 42 H H66 LBN . . . Y 7 119.525 104.284 132.639 1 29.63 ? H66 LBN 504 C 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 42 #