data_7T92
#
_model_server_result.job_id            UDc7qYNofnSaY3RMGHr6HQ 
_model_server_result.datetime_utc      '2024-10-16 23:30:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7t92 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":505}' 
#
_entry.id    7T92 
#
_exptl.entry_id    7T92 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7T92 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7T92 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 N N N 
? 7 Q N N 
? 7 R N N 
? 7 S N N 
? 7 T N N 
? 7 U N N 
? 7 Y N N 
? 7 Z N N 
? 7 AA N N 
? 7 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 367 B CYS 412 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc2 A SG CYS 370 B CYS 415 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc3 A SG CYS 387 B CYS 432 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc4 A SG CYS 390 B CYS 435 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc5 B SG CYS 265 A CYS 270 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 B SG CYS 268 A CYS 273 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc7 B SG CYS 306 A CYS 311 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc8 B SG CYS 308 A CYS 313 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc9 B SG CYS 311 A CYS 316 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc10 B SG CYS 314 A CYS 319 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc11 B SG CYS 329 A CYS 334 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc12 B SG CYS 332 A CYS 337 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc13 C SG CYS 402 C CYS 402 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc14 C SG CYS 405 C CYS 405 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc15 C SG CYS 417 C CYS 417 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc16 C ND1 HIS 419 C HIS 419 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc17 C SG CYS 422 C CYS 422 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc18 C SG CYS 425 C CYS 425 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc19 C SG CYS 436 C CYS 436 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc20 C SG CYS 439 C CYS 439 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                LBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 N1 LBN sing 248 n n 
O3 P1 LBN sing 249 n n 
O2 C9 LBN sing 250 n n 
O2 P1 LBN sing 251 n n 
C9 C6 LBN sing 252 n n 
O4 P1 LBN doub 253 n n 
P1 O1 LBN sing 254 n n 
C6 N1 LBN sing 255 n n 
N1 C15 LBN sing 256 n n 
N1 C18 LBN sing 257 n n 
O1 C1 LBN sing 258 n n 
C2 C1 LBN sing 259 n n 
C2 C3 LBN sing 260 n n 
C2 O7 LBN sing 261 n n 
C3 O5 LBN sing 262 n n 
O6 C25 LBN doub 263 n n 
O5 C25 LBN sing 264 n n 
O7 C34 LBN sing 265 n n 
C25 C26 LBN sing 266 n n 
C34 C35 LBN sing 267 n n 
C34 O8 LBN doub 268 n n 
C26 C27 LBN sing 269 n n 
C35 C36 LBN sing 270 n n 
C27 C28 LBN sing 271 n n 
C36 C37 LBN sing 272 n n 
C28 C29 LBN sing 273 n n 
C37 C38 LBN sing 274 n n 
C29 C30 LBN sing 275 n n 
C39 C38 LBN sing 276 n n 
C39 C40 LBN sing 277 n n 
C41 C40 LBN sing 278 n n 
C41 C42 LBN sing 279 n n 
C30 C31 LBN sing 280 n n 
C42 C5 LBN doub 281 z n 
C31 C32 LBN sing 282 n n 
C5 C8 LBN sing 283 n n 
C8 C11 LBN sing 284 n n 
C32 C33 LBN sing 285 n n 
C11 C14 LBN sing 286 n n 
C33 C4 LBN sing 287 n n 
C14 C17 LBN sing 288 n n 
C4 C7 LBN sing 289 n n 
C17 C20 LBN sing 290 n n 
C7 C10 LBN sing 291 n n 
C20 C22 LBN sing 292 n n 
C10 C13 LBN sing 293 n n 
C22 C23 LBN sing 294 n n 
C13 C16 LBN sing 295 n n 
C23 C24 LBN sing 296 n n 
C16 C19 LBN sing 297 n n 
C19 C21 LBN sing 298 n n 
C1 H1 LBN sing 299 n n 
C1 H2 LBN sing 300 n n 
C2 H3 LBN sing 301 n n 
C3 H4 LBN sing 302 n n 
C3 H5 LBN sing 303 n n 
C4 H6 LBN sing 304 n n 
C4 H7 LBN sing 305 n n 
C5 H8 LBN sing 306 n n 
C6 H9 LBN sing 307 n n 
C6 H10 LBN sing 308 n n 
C7 H11 LBN sing 309 n n 
C7 H12 LBN sing 310 n n 
C8 H13 LBN sing 311 n n 
C8 H14 LBN sing 312 n n 
C9 H15 LBN sing 313 n n 
C9 H16 LBN sing 314 n n 
C10 H17 LBN sing 315 n n 
C10 H18 LBN sing 316 n n 
C11 H19 LBN sing 317 n n 
C12 H20 LBN sing 318 n n 
C12 H21 LBN sing 319 n n 
C12 H22 LBN sing 320 n n 
C13 H23 LBN sing 321 n n 
C13 H24 LBN sing 322 n n 
C14 H25 LBN sing 323 n n 
C15 H26 LBN sing 324 n n 
C15 H27 LBN sing 325 n n 
C15 H28 LBN sing 326 n n 
C16 H30 LBN sing 327 n n 
C16 H31 LBN sing 328 n n 
C17 H32 LBN sing 329 n n 
C17 H33 LBN sing 330 n n 
C18 H34 LBN sing 331 n n 
C18 H35 LBN sing 332 n n 
C18 H36 LBN sing 333 n n 
C19 H37 LBN sing 334 n n 
C19 H38 LBN sing 335 n n 
C20 H39 LBN sing 336 n n 
C20 H40 LBN sing 337 n n 
C21 H41 LBN sing 338 n n 
C21 H42 LBN sing 339 n n 
C21 H43 LBN sing 340 n n 
C22 H44 LBN sing 341 n n 
C22 H45 LBN sing 342 n n 
C23 H46 LBN sing 343 n n 
C23 H47 LBN sing 344 n n 
C24 H48 LBN sing 345 n n 
C24 H49 LBN sing 346 n n 
C24 H50 LBN sing 347 n n 
C26 H51 LBN sing 348 n n 
C26 H52 LBN sing 349 n n 
C27 H53 LBN sing 350 n n 
C27 H54 LBN sing 351 n n 
C28 H55 LBN sing 352 n n 
C28 H56 LBN sing 353 n n 
C29 H57 LBN sing 354 n n 
C29 H58 LBN sing 355 n n 
C30 H59 LBN sing 356 n n 
C30 H60 LBN sing 357 n n 
C31 H61 LBN sing 358 n n 
C31 H62 LBN sing 359 n n 
C32 H63 LBN sing 360 n n 
C32 H64 LBN sing 361 n n 
C33 H65 LBN sing 362 n n 
C33 H66 LBN sing 363 n n 
C35 H67 LBN sing 364 n n 
C35 H68 LBN sing 365 n n 
C36 H69 LBN sing 366 n n 
C36 H70 LBN sing 367 n n 
C37 H71 LBN sing 368 n n 
C37 H72 LBN sing 369 n n 
C38 H73 LBN sing 370 n n 
C38 H74 LBN sing 371 n n 
C39 H75 LBN sing 372 n n 
C40 H76 LBN sing 373 n n 
C41 H77 LBN sing 374 n n 
C41 H78 LBN sing 375 n n 
C42 H79 LBN sing 376 n n 
C11 H80 LBN sing 377 n n 
C14 H81 LBN sing 378 n n 
C39 H82 LBN sing 379 n n 
C40 H83 LBN sing 380 n n 
#
_atom_sites.entry_id                     7T92 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 ZN B 1 501 501 ZN ZN . 
G 7 LBN B 1 502 502 LBN LBN . 
H 7 LBN B 1 503 503 LBN LBN . 
I 7 LBN B 1 504 504 LBN LBN . 
J 7 LBN B 1 505 505 LBN LBN . 
K 7 LBN B 1 506 506 LBN LBN . 
L 6 ZN A 1 401 401 ZN ZN . 
M 6 ZN A 1 402 402 ZN ZN . 
N 7 LBN A 1 403 403 LBN LBN . 
O 8 CLR A 1 404 404 CLR CLR . 
P 8 CLR A 1 405 405 CLR CLR . 
Q 7 LBN A 1 406 406 LBN LBN . 
R 7 LBN A 1 407 407 LBN LBN . 
S 7 LBN A 1 408 408 LBN LBN . 
T 7 LBN A 1 409 409 LBN LBN . 
U 7 LBN A 1 410 410 LBN LBN . 
V 6 ZN C 1 501 501 ZN ZN . 
W 6 ZN C 1 502 502 ZN ZN . 
X 8 CLR C 1 503 503 CLR CLR . 
Y 7 LBN C 1 504 504 LBN LBN . 
Z 7 LBN C 1 505 505 LBN LBN . 
AA 7 LBN C 1 506 506 LBN LBN . 
BA 7 LBN C 1 507 507 LBN LBN . 
CA 8 CLR C 1 508 508 CLR CLR . 
DA 8 CLR C 1 509 509 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LBN . . . Z 7 114.324 115.221 133.059 1 29.46 ? C1 LBN 505 C 1 
HETATM 2 N N1 LBN . . . Z 7 117.68 119.939 133.178 1 29.46 ? N1 LBN 505 C 1 
HETATM 3 P P1 LBN . . . Z 7 116.891 115.319 132.525 1 29.46 ? P1 LBN 505 C 1 
HETATM 4 C C2 LBN . . . Z 7 113.432 114.25 133.821 1 29.46 ? C2 LBN 505 C 1 
HETATM 5 C C3 LBN . . . Z 7 112.909 114.927 135.084 1 29.46 ? C3 LBN 505 C 1 
HETATM 6 C C6 LBN . . . Z 7 118.525 118.77 133.333 1 29.46 ? C6 LBN 505 C 1 
HETATM 7 O O1 LBN . . . Z 7 115.625 115.152 133.56 1 29.46 ? O1 LBN 505 C 1 
HETATM 8 C C9 LBN . . . Z 7 117.645 117.564 133.647 1 29.46 ? C9 LBN 505 C 1 
HETATM 9 O O2 LBN . . . Z 7 117.361 116.892 132.457 1 29.46 ? O2 LBN 505 C 1 
HETATM 10 O O3 LBN . . . Z 7 118.037 114.48 133.018 1 29.46 ? O3 LBN 505 C 1 
HETATM 11 O O4 LBN . . . Z 7 116.489 114.86 131.151 1 29.46 ? O4 LBN 505 C 1 
HETATM 12 C C25 LBN . . . Z 7 111.323 114.418 136.747 1 29.46 ? C25 LBN 505 C 1 
HETATM 13 O O5 LBN . . . Z 7 112.353 113.96 135.922 1 29.46 ? O5 LBN 505 C 1 
HETATM 14 C C26 LBN . . . Z 7 110.206 113.473 137.182 1 29.46 ? C26 LBN 505 C 1 
HETATM 15 O O6 LBN . . . Z 7 111.319 115.54 137.109 1 29.46 ? O6 LBN 505 C 1 
HETATM 16 C C34 LBN . . . Z 7 112.441 112.644 132.403 1 29.46 ? C34 LBN 505 C 1 
HETATM 17 O O7 LBN . . . Z 7 112.348 113.894 133.021 1 29.46 ? O7 LBN 505 C 1 
HETATM 18 C C35 LBN . . . Z 7 111.518 111.507 132.825 1 29.46 ? C35 LBN 505 C 1 
HETATM 19 O O8 LBN . . . Z 7 113.229 112.469 131.543 1 29.46 ? O8 LBN 505 C 1 
HETATM 20 C C36 LBN . . . Z 7 110.657 111.099 131.635 1 29.46 ? C36 LBN 505 C 1 
HETATM 21 H H1 LBN . . . Z 7 114.322 114.988 132.118 1 29.46 ? H1 LBN 505 C 1 
HETATM 22 H H2 LBN . . . Z 7 113.985 116.124 133.169 1 29.46 ? H2 LBN 505 C 1 
HETATM 23 H H3 LBN . . . Z 7 113.937 113.457 134.06 1 29.46 ? H3 LBN 505 C 1 
HETATM 24 H H4 LBN . . . Z 7 112.234 115.583 134.849 1 29.46 ? H4 LBN 505 C 1 
HETATM 25 H H5 LBN . . . Z 7 113.642 115.369 135.541 1 29.46 ? H5 LBN 505 C 1 
HETATM 26 H H9 LBN . . . Z 7 119.149 118.915 134.062 1 29.46 ? H9 LBN 505 C 1 
HETATM 27 H H10 LBN . . . Z 7 119.016 118.609 132.512 1 29.46 ? H10 LBN 505 C 1 
HETATM 28 H H15 LBN . . . Z 7 116.819 117.863 134.058 1 29.46 ? H15 LBN 505 C 1 
HETATM 29 H H16 LBN . . . Z 7 118.113 116.968 134.253 1 29.46 ? H16 LBN 505 C 1 
HETATM 30 H H51 LBN . . . Z 7 110.515 112.925 137.92 1 29.46 ? H51 LBN 505 C 1 
HETATM 31 H H52 LBN . . . Z 7 109.959 112.902 136.437 1 29.46 ? H52 LBN 505 C 1 
HETATM 32 H H67 LBN . . . Z 7 110.948 111.802 133.552 1 29.46 ? H67 LBN 505 C 1 
HETATM 33 H H68 LBN . . . Z 7 112.049 110.749 133.116 1 29.46 ? H68 LBN 505 C 1 
HETATM 34 H H69 LBN . . . Z 7 111.212 111.035 130.842 1 29.46 ? H69 LBN 505 C 1 
HETATM 35 H H70 LBN . . . Z 7 109.967 111.765 131.492 1 29.46 ? H70 LBN 505 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#