data_7T92 # _model_server_result.job_id 9Zc9go3kVEIM7PUzPSm2Hw _model_server_result.datetime_utc '2024-10-16 23:29:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":506}' # _entry.id 7T92 # _exptl.entry_id 7T92 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T92 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 N N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 Y N N ? 7 Z N N ? 7 AA N N ? 7 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 367 B CYS 412 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A SG CYS 370 B CYS 415 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A SG CYS 387 B CYS 432 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A SG CYS 390 B CYS 435 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 B SG CYS 265 A CYS 270 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 B SG CYS 268 A CYS 273 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 B SG CYS 306 A CYS 311 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 B SG CYS 308 A CYS 313 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 B SG CYS 311 A CYS 316 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc10 B SG CYS 314 A CYS 319 1_555 M ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc11 B SG CYS 329 A CYS 334 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc12 B SG CYS 332 A CYS 337 1_555 L ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc13 C SG CYS 402 C CYS 402 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc14 C SG CYS 405 C CYS 405 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc15 C SG CYS 417 C CYS 417 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc16 C ND1 HIS 419 C HIS 419 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc17 C SG CYS 422 C CYS 422 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc18 C SG CYS 425 C CYS 425 1_555 W ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc19 C SG CYS 436 C CYS 436 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc20 C SG CYS 439 C CYS 439 1_555 V ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 248 n n O3 P1 LBN sing 249 n n O2 C9 LBN sing 250 n n O2 P1 LBN sing 251 n n C9 C6 LBN sing 252 n n O4 P1 LBN doub 253 n n P1 O1 LBN sing 254 n n C6 N1 LBN sing 255 n n N1 C15 LBN sing 256 n n N1 C18 LBN sing 257 n n O1 C1 LBN sing 258 n n C2 C1 LBN sing 259 n n C2 C3 LBN sing 260 n n C2 O7 LBN sing 261 n n C3 O5 LBN sing 262 n n O6 C25 LBN doub 263 n n O5 C25 LBN sing 264 n n O7 C34 LBN sing 265 n n C25 C26 LBN sing 266 n n C34 C35 LBN sing 267 n n C34 O8 LBN doub 268 n n C26 C27 LBN sing 269 n n C35 C36 LBN sing 270 n n C27 C28 LBN sing 271 n n C36 C37 LBN sing 272 n n C28 C29 LBN sing 273 n n C37 C38 LBN sing 274 n n C29 C30 LBN sing 275 n n C39 C38 LBN sing 276 n n C39 C40 LBN sing 277 n n C41 C40 LBN sing 278 n n C41 C42 LBN sing 279 n n C30 C31 LBN sing 280 n n C42 C5 LBN doub 281 z n C31 C32 LBN sing 282 n n C5 C8 LBN sing 283 n n C8 C11 LBN sing 284 n n C32 C33 LBN sing 285 n n C11 C14 LBN sing 286 n n C33 C4 LBN sing 287 n n C14 C17 LBN sing 288 n n C4 C7 LBN sing 289 n n C17 C20 LBN sing 290 n n C7 C10 LBN sing 291 n n C20 C22 LBN sing 292 n n C10 C13 LBN sing 293 n n C22 C23 LBN sing 294 n n C13 C16 LBN sing 295 n n C23 C24 LBN sing 296 n n C16 C19 LBN sing 297 n n C19 C21 LBN sing 298 n n C1 H1 LBN sing 299 n n C1 H2 LBN sing 300 n n C2 H3 LBN sing 301 n n C3 H4 LBN sing 302 n n C3 H5 LBN sing 303 n n C4 H6 LBN sing 304 n n C4 H7 LBN sing 305 n n C5 H8 LBN sing 306 n n C6 H9 LBN sing 307 n n C6 H10 LBN sing 308 n n C7 H11 LBN sing 309 n n C7 H12 LBN sing 310 n n C8 H13 LBN sing 311 n n C8 H14 LBN sing 312 n n C9 H15 LBN sing 313 n n C9 H16 LBN sing 314 n n C10 H17 LBN sing 315 n n C10 H18 LBN sing 316 n n C11 H19 LBN sing 317 n n C12 H20 LBN sing 318 n n C12 H21 LBN sing 319 n n C12 H22 LBN sing 320 n n C13 H23 LBN sing 321 n n C13 H24 LBN sing 322 n n C14 H25 LBN sing 323 n n C15 H26 LBN sing 324 n n C15 H27 LBN sing 325 n n C15 H28 LBN sing 326 n n C16 H30 LBN sing 327 n n C16 H31 LBN sing 328 n n C17 H32 LBN sing 329 n n C17 H33 LBN sing 330 n n C18 H34 LBN sing 331 n n C18 H35 LBN sing 332 n n C18 H36 LBN sing 333 n n C19 H37 LBN sing 334 n n C19 H38 LBN sing 335 n n C20 H39 LBN sing 336 n n C20 H40 LBN sing 337 n n C21 H41 LBN sing 338 n n C21 H42 LBN sing 339 n n C21 H43 LBN sing 340 n n C22 H44 LBN sing 341 n n C22 H45 LBN sing 342 n n C23 H46 LBN sing 343 n n C23 H47 LBN sing 344 n n C24 H48 LBN sing 345 n n C24 H49 LBN sing 346 n n C24 H50 LBN sing 347 n n C26 H51 LBN sing 348 n n C26 H52 LBN sing 349 n n C27 H53 LBN sing 350 n n C27 H54 LBN sing 351 n n C28 H55 LBN sing 352 n n C28 H56 LBN sing 353 n n C29 H57 LBN sing 354 n n C29 H58 LBN sing 355 n n C30 H59 LBN sing 356 n n C30 H60 LBN sing 357 n n C31 H61 LBN sing 358 n n C31 H62 LBN sing 359 n n C32 H63 LBN sing 360 n n C32 H64 LBN sing 361 n n C33 H65 LBN sing 362 n n C33 H66 LBN sing 363 n n C35 H67 LBN sing 364 n n C35 H68 LBN sing 365 n n C36 H69 LBN sing 366 n n C36 H70 LBN sing 367 n n C37 H71 LBN sing 368 n n C37 H72 LBN sing 369 n n C38 H73 LBN sing 370 n n C38 H74 LBN sing 371 n n C39 H75 LBN sing 372 n n C40 H76 LBN sing 373 n n C41 H77 LBN sing 374 n n C41 H78 LBN sing 375 n n C42 H79 LBN sing 376 n n C11 H80 LBN sing 377 n n C14 H81 LBN sing 378 n n C39 H82 LBN sing 379 n n C40 H83 LBN sing 380 n n # _atom_sites.entry_id 7T92 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN B 1 501 501 ZN ZN . G 7 LBN B 1 502 502 LBN LBN . H 7 LBN B 1 503 503 LBN LBN . I 7 LBN B 1 504 504 LBN LBN . J 7 LBN B 1 505 505 LBN LBN . K 7 LBN B 1 506 506 LBN LBN . L 6 ZN A 1 401 401 ZN ZN . M 6 ZN A 1 402 402 ZN ZN . N 7 LBN A 1 403 403 LBN LBN . O 8 CLR A 1 404 404 CLR CLR . P 8 CLR A 1 405 405 CLR CLR . Q 7 LBN A 1 406 406 LBN LBN . R 7 LBN A 1 407 407 LBN LBN . S 7 LBN A 1 408 408 LBN LBN . T 7 LBN A 1 409 409 LBN LBN . U 7 LBN A 1 410 410 LBN LBN . V 6 ZN C 1 501 501 ZN ZN . W 6 ZN C 1 502 502 ZN ZN . X 8 CLR C 1 503 503 CLR CLR . Y 7 LBN C 1 504 504 LBN LBN . Z 7 LBN C 1 505 505 LBN LBN . AA 7 LBN C 1 506 506 LBN LBN . BA 7 LBN C 1 507 507 LBN LBN . CA 8 CLR C 1 508 508 CLR CLR . DA 8 CLR C 1 509 509 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . AA 7 114.527 118.12 141.468 1 40.52 ? C1 LBN 506 C 1 HETATM 2 P P1 LBN . . . AA 7 114.571 120.401 142.715 1 40.52 ? P1 LBN 506 C 1 HETATM 3 C C2 LBN . . . AA 7 114.16 117.624 140.07 1 40.52 ? C2 LBN 506 C 1 HETATM 4 C C3 LBN . . . AA 7 112.691 117.224 140.031 1 40.52 ? C3 LBN 506 C 1 HETATM 5 O O1 LBN . . . AA 7 113.792 119.254 141.821 1 40.52 ? O1 LBN 506 C 1 HETATM 6 O O2 LBN . . . AA 7 115.033 119.755 144.157 1 40.52 ? O2 LBN 506 C 1 HETATM 7 O O3 LBN . . . AA 7 115.797 120.874 141.974 1 40.52 ? O3 LBN 506 C 1 HETATM 8 O O4 LBN . . . AA 7 113.659 121.572 142.97 1 40.52 ? O4 LBN 506 C 1 HETATM 9 C C25 LBN . . . AA 7 112.749 115.291 141.373 1 40.52 ? C25 LBN 506 C 1 HETATM 10 O O5 LBN . . . AA 7 112.343 116.62 141.24 1 40.52 ? O5 LBN 506 C 1 HETATM 11 C C26 LBN . . . AA 7 112.325 114.491 142.601 1 40.52 ? C26 LBN 506 C 1 HETATM 12 O O6 LBN . . . AA 7 113.421 114.786 140.545 1 40.52 ? O6 LBN 506 C 1 HETATM 13 C C27 LBN . . . AA 7 113.04 113.144 142.61 1 40.52 ? C27 LBN 506 C 1 HETATM 14 C C34 LBN . . . AA 7 115.402 118.532 138.198 1 40.52 ? C34 LBN 506 C 1 HETATM 15 O O7 LBN . . . AA 7 114.375 118.653 139.148 1 40.52 ? O7 LBN 506 C 1 HETATM 16 C C35 LBN . . . AA 7 116.517 117.488 138.264 1 40.52 ? C35 LBN 506 C 1 HETATM 17 O O8 LBN . . . AA 7 115.411 119.296 137.296 1 40.52 ? O8 LBN 506 C 1 HETATM 18 C C36 LBN . . . AA 7 116.085 116.222 137.532 1 40.52 ? C36 LBN 506 C 1 HETATM 19 C C37 LBN . . . AA 7 117.1 115.117 137.8 1 40.52 ? C37 LBN 506 C 1 HETATM 20 C C38 LBN . . . AA 7 116.661 113.819 137.129 1 40.52 ? C38 LBN 506 C 1 HETATM 21 C C39 LBN . . . AA 7 115.465 113.237 137.873 1 40.52 ? C39 LBN 506 C 1 HETATM 22 C C40 LBN . . . AA 7 115.408 111.727 137.663 1 40.52 ? C40 LBN 506 C 1 HETATM 23 C C41 LBN . . . AA 7 114.441 111.116 138.673 1 40.52 ? C41 LBN 506 C 1 HETATM 24 H H1 LBN . . . AA 7 115.47 118.348 141.48 1 40.52 ? H1 LBN 506 C 1 HETATM 25 H H2 LBN . . . AA 7 114.365 117.418 142.116 1 40.52 ? H2 LBN 506 C 1 HETATM 26 H H3 LBN . . . AA 7 114.693 116.846 139.857 1 40.52 ? H3 LBN 506 C 1 HETATM 27 H H4 LBN . . . AA 7 112.548 116.603 139.299 1 40.52 ? H4 LBN 506 C 1 HETATM 28 H H5 LBN . . . AA 7 112.147 118.015 139.896 1 40.52 ? H5 LBN 506 C 1 HETATM 29 H H51 LBN . . . AA 7 111.365 114.348 142.577 1 40.52 ? H51 LBN 506 C 1 HETATM 30 H H52 LBN . . . AA 7 112.556 114.986 143.402 1 40.52 ? H52 LBN 506 C 1 HETATM 31 H H53 LBN . . . AA 7 112.781 112.636 141.825 1 40.52 ? H53 LBN 506 C 1 HETATM 32 H H54 LBN . . . AA 7 112.793 112.653 143.409 1 40.52 ? H54 LBN 506 C 1 HETATM 33 H H67 LBN . . . AA 7 116.72 117.279 139.189 1 40.52 ? H67 LBN 506 C 1 HETATM 34 H H68 LBN . . . AA 7 117.312 117.845 137.838 1 40.52 ? H68 LBN 506 C 1 HETATM 35 H H69 LBN . . . AA 7 116.043 116.398 136.579 1 40.52 ? H69 LBN 506 C 1 HETATM 36 H H70 LBN . . . AA 7 115.211 115.946 137.848 1 40.52 ? H70 LBN 506 C 1 HETATM 37 H H71 LBN . . . AA 7 117.178 114.976 138.757 1 40.52 ? H71 LBN 506 C 1 HETATM 38 H H72 LBN . . . AA 7 117.963 115.383 137.445 1 40.52 ? H72 LBN 506 C 1 HETATM 39 H H73 LBN . . . AA 7 117.395 113.185 137.146 1 40.52 ? H73 LBN 506 C 1 HETATM 40 H H74 LBN . . . AA 7 116.413 114 136.209 1 40.52 ? H74 LBN 506 C 1 HETATM 41 H H75 LBN . . . AA 7 114.649 113.639 137.534 1 40.52 ? H75 LBN 506 C 1 HETATM 42 H H76 LBN . . . AA 7 116.291 111.346 137.791 1 40.52 ? H76 LBN 506 C 1 HETATM 43 H H77 LBN . . . AA 7 114.439 110.151 138.576 1 40.52 ? H77 LBN 506 C 1 HETATM 44 H H78 LBN . . . AA 7 114.722 111.349 139.572 1 40.52 ? H78 LBN 506 C 1 HETATM 45 H H82 LBN . . . AA 7 115.548 113.427 138.82 1 40.52 ? H82 LBN 506 C 1 HETATM 46 H H83 LBN . . . AA 7 115.1 111.536 136.764 1 40.52 ? H83 LBN 506 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 46 #