data_7T9D
#
_model_server_result.job_id            xfD-0DFlDsIqCaw4Tp7hIA 
_model_server_result.datetime_utc      '2024-11-27 08:23:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7t9d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":205}' 
#
_entry.id    7T9D 
#
_exptl.entry_id    7T9D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              152.233 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S,4S,6R)-1-methyl-4-(prop-1-en-2-yl)-7-oxabicyclo[4.1.0]heptane 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7T9D 
_cell.length_a            58.657 
_cell.length_b            66.492 
_cell.length_c            68.34 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7T9D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 K N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 55 A HIS 55 1_555 C FE HEM . A HEM 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc2 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc3 B NE2 HIS 89 B HIS 89 1_555 J FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C10 H16 O' 
_chem_comp.formula_weight    152.233 
_chem_comp.id                GHI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S,4S,6R)-1-methyl-4-(prop-1-en-2-yl)-7-oxabicyclo[4.1.0]heptane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '-(-) limonene oxide' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 C6 GHI sing 83 n n 
O C6 GHI sing 84 n n 
O C8 GHI sing 85 n n 
C6 C5 GHI sing 86 n n 
C6 C8 GHI sing 87 n n 
C5 C4 GHI sing 88 n n 
C8 C9 GHI sing 89 n n 
C4 C3 GHI sing 90 n n 
C3 C9 GHI sing 91 n n 
C3 C1 GHI sing 92 n n 
C C1 GHI sing 93 n n 
C1 C2 GHI doub 94 n n 
C2 H1 GHI sing 95 n n 
C2 H2 GHI sing 96 n n 
C H3 GHI sing 97 n n 
C H4 GHI sing 98 n n 
C H5 GHI sing 99 n n 
C3 H6 GHI sing 100 n n 
C9 H7 GHI sing 101 n n 
C9 H8 GHI sing 102 n n 
C8 H9 GHI sing 103 n n 
C7 H10 GHI sing 104 n n 
C7 H11 GHI sing 105 n n 
C7 H12 GHI sing 106 n n 
C5 H13 GHI sing 107 n n 
C5 H14 GHI sing 108 n n 
C4 H15 GHI sing 109 n n 
C4 H16 GHI sing 110 n n 
#
_atom_sites.entry_id                     7T9D 
_atom_sites.fract_transf_matrix[1][1]    0.017048 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015039 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014633 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 139 HEM HEM . 
D 3 GOL A 1 202 140 GOL GOL . 
E 3 GOL A 1 203 141 GOL GOL . 
F 3 GOL A 1 204 142 GOL GOL . 
G 4 GHI A 1 205 143 GHI MO1 . 
H 5 SO4 A 1 206 1 SO4 SO4 . 
I 5 SO4 A 1 207 2 SO4 SO4 . 
J 2 HEM B 1 201 139 HEM HEM . 
K 4 GHI B 1 202 140 GHI MO1 . 
L 3 GOL B 1 203 141 GOL GOL . 
M 3 GOL B 1 204 142 GOL GOL . 
N 4 GHI B 1 205 143 GHI MO1 . 
O 5 SO4 B 1 206 3 SO4 SO4 . 
P 6 HOH A 1 301 27 HOH HOH . 
P 6 HOH A 2 302 105 HOH HOH . 
P 6 HOH A 3 303 144 HOH HOH . 
P 6 HOH A 4 304 72 HOH HOH . 
P 6 HOH A 5 305 109 HOH HOH . 
P 6 HOH A 6 306 87 HOH HOH . 
P 6 HOH A 7 307 33 HOH HOH . 
P 6 HOH A 8 308 1 HOH HOH . 
P 6 HOH A 9 309 110 HOH HOH . 
P 6 HOH A 10 310 30 HOH HOH . 
P 6 HOH A 11 311 4 HOH HOH . 
P 6 HOH A 12 312 74 HOH HOH . 
P 6 HOH A 13 313 28 HOH HOH . 
P 6 HOH A 14 314 131 HOH HOH . 
P 6 HOH A 15 315 136 HOH HOH . 
P 6 HOH A 16 316 86 HOH HOH . 
P 6 HOH A 17 317 75 HOH HOH . 
P 6 HOH A 18 318 56 HOH HOH . 
P 6 HOH A 19 319 112 HOH HOH . 
P 6 HOH A 20 320 25 HOH HOH . 
P 6 HOH A 21 321 43 HOH HOH . 
P 6 HOH A 22 322 31 HOH HOH . 
P 6 HOH A 23 323 97 HOH HOH . 
P 6 HOH A 24 324 65 HOH HOH . 
P 6 HOH A 25 325 48 HOH HOH . 
P 6 HOH A 26 326 53 HOH HOH . 
P 6 HOH A 27 327 21 HOH HOH . 
P 6 HOH A 28 328 66 HOH HOH . 
P 6 HOH A 29 329 89 HOH HOH . 
P 6 HOH A 30 330 96 HOH HOH . 
P 6 HOH A 31 331 15 HOH HOH . 
P 6 HOH A 32 332 32 HOH HOH . 
P 6 HOH A 33 333 119 HOH HOH . 
P 6 HOH A 34 334 138 HOH HOH . 
P 6 HOH A 35 335 24 HOH HOH . 
P 6 HOH A 36 336 12 HOH HOH . 
P 6 HOH A 37 337 58 HOH HOH . 
P 6 HOH A 38 338 18 HOH HOH . 
P 6 HOH A 39 339 60 HOH HOH . 
P 6 HOH A 40 340 139 HOH HOH . 
P 6 HOH A 41 341 41 HOH HOH . 
P 6 HOH A 42 342 132 HOH HOH . 
P 6 HOH A 43 343 108 HOH HOH . 
P 6 HOH A 44 344 23 HOH HOH . 
P 6 HOH A 45 345 3 HOH HOH . 
P 6 HOH A 46 346 130 HOH HOH . 
P 6 HOH A 47 347 121 HOH HOH . 
P 6 HOH A 48 348 91 HOH HOH . 
P 6 HOH A 49 349 135 HOH HOH . 
P 6 HOH A 50 350 68 HOH HOH . 
P 6 HOH A 51 351 71 HOH HOH . 
P 6 HOH A 52 352 2 HOH HOH . 
P 6 HOH A 53 353 82 HOH HOH . 
P 6 HOH A 54 354 63 HOH HOH . 
P 6 HOH A 55 355 111 HOH HOH . 
P 6 HOH A 56 356 106 HOH HOH . 
P 6 HOH A 57 357 137 HOH HOH . 
P 6 HOH A 58 358 59 HOH HOH . 
P 6 HOH A 59 359 140 HOH HOH . 
P 6 HOH A 60 360 17 HOH HOH . 
P 6 HOH A 61 361 85 HOH HOH . 
P 6 HOH A 62 362 83 HOH HOH . 
P 6 HOH A 63 363 133 HOH HOH . 
Q 6 HOH B 1 301 51 HOH HOH . 
Q 6 HOH B 2 302 81 HOH HOH . 
Q 6 HOH B 3 303 35 HOH HOH . 
Q 6 HOH B 4 304 143 HOH HOH . 
Q 6 HOH B 5 305 36 HOH HOH . 
Q 6 HOH B 6 306 146 HOH HOH . 
Q 6 HOH B 7 307 54 HOH HOH . 
Q 6 HOH B 8 308 100 HOH HOH . 
Q 6 HOH B 9 309 8 HOH HOH . 
Q 6 HOH B 10 310 78 HOH HOH . 
Q 6 HOH B 11 311 26 HOH HOH . 
Q 6 HOH B 12 312 46 HOH HOH . 
Q 6 HOH B 13 313 39 HOH HOH . 
Q 6 HOH B 14 314 67 HOH HOH . 
Q 6 HOH B 15 315 134 HOH HOH . 
Q 6 HOH B 16 316 45 HOH HOH . 
Q 6 HOH B 17 317 64 HOH HOH . 
Q 6 HOH B 18 318 50 HOH HOH . 
Q 6 HOH B 19 319 73 HOH HOH . 
Q 6 HOH B 20 320 88 HOH HOH . 
Q 6 HOH B 21 321 40 HOH HOH . 
Q 6 HOH B 22 322 6 HOH HOH . 
Q 6 HOH B 23 323 98 HOH HOH . 
Q 6 HOH B 24 324 38 HOH HOH . 
Q 6 HOH B 25 325 42 HOH HOH . 
Q 6 HOH B 26 326 101 HOH HOH . 
Q 6 HOH B 27 327 34 HOH HOH . 
Q 6 HOH B 28 328 29 HOH HOH . 
Q 6 HOH B 29 329 14 HOH HOH . 
Q 6 HOH B 30 330 19 HOH HOH . 
Q 6 HOH B 31 331 104 HOH HOH . 
Q 6 HOH B 32 332 103 HOH HOH . 
Q 6 HOH B 33 333 44 HOH HOH . 
Q 6 HOH B 34 334 22 HOH HOH . 
Q 6 HOH B 35 335 118 HOH HOH . 
Q 6 HOH B 36 336 107 HOH HOH . 
Q 6 HOH B 37 337 57 HOH HOH . 
Q 6 HOH B 38 338 93 HOH HOH . 
Q 6 HOH B 39 339 94 HOH HOH . 
Q 6 HOH B 40 340 55 HOH HOH . 
Q 6 HOH B 41 341 47 HOH HOH . 
Q 6 HOH B 42 342 117 HOH HOH . 
Q 6 HOH B 43 343 16 HOH HOH . 
Q 6 HOH B 44 344 20 HOH HOH . 
Q 6 HOH B 45 345 9 HOH HOH . 
Q 6 HOH B 46 346 37 HOH HOH . 
Q 6 HOH B 47 347 99 HOH HOH . 
Q 6 HOH B 48 348 141 HOH HOH . 
Q 6 HOH B 49 349 13 HOH HOH . 
Q 6 HOH B 50 350 92 HOH HOH . 
Q 6 HOH B 51 351 79 HOH HOH . 
Q 6 HOH B 52 352 70 HOH HOH . 
Q 6 HOH B 53 353 76 HOH HOH . 
Q 6 HOH B 54 354 52 HOH HOH . 
Q 6 HOH B 55 355 7 HOH HOH . 
Q 6 HOH B 56 356 49 HOH HOH . 
Q 6 HOH B 57 357 145 HOH HOH . 
Q 6 HOH B 58 358 62 HOH HOH . 
Q 6 HOH B 59 359 148 HOH HOH . 
Q 6 HOH B 60 360 90 HOH HOH . 
Q 6 HOH B 61 361 95 HOH HOH . 
Q 6 HOH B 62 362 116 HOH HOH . 
Q 6 HOH B 63 363 142 HOH HOH . 
Q 6 HOH B 64 364 102 HOH HOH . 
Q 6 HOH B 65 365 61 HOH HOH . 
Q 6 HOH B 66 366 147 HOH HOH . 
Q 6 HOH B 67 367 84 HOH HOH . 
Q 6 HOH B 68 368 113 HOH HOH . 
Q 6 HOH B 69 369 114 HOH HOH . 
Q 6 HOH B 70 370 80 HOH HOH . 
Q 6 HOH B 71 371 69 HOH HOH . 
Q 6 HOH B 72 372 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 GHI . . . N 4 -23.008 1.931 17.829 0.3 33.84 0 C2 GHI 205 B 1 
HETATM 2 C C1 GHI . . . N 4 -22.006 2.171 18.567 0.3 32.81 0 C1 GHI 205 B 1 
HETATM 3 C C GHI . . . N 4 -21.739 1.34 19.692 0.3 29.39 0 C GHI 205 B 1 
HETATM 4 C C3 GHI . . . N 4 -21.16 3.418 18.37 0.3 37.7 0 C3 GHI 205 B 1 
HETATM 5 C C9 GHI . . . N 4 -19.944 3.281 17.441 0.3 39.97 0 C9 GHI 205 B 1 
HETATM 6 C C8 GHI . . . N 4 -19.119 4.578 17.403 0.3 44.92 0 C8 GHI 205 B 1 
HETATM 7 O O GHI . . . N 4 -19.826 5.783 17.014 0.3 47.54 0 O GHI 205 B 1 
HETATM 8 C C6 GHI . . . N 4 -19.315 5.668 18.376 0.3 44.53 0 C6 GHI 205 B 1 
HETATM 9 C C7 GHI . . . N 4 -18.209 6.659 18.691 0.3 49.06 0 C7 GHI 205 B 1 
HETATM 10 C C5 GHI . . . N 4 -20.402 5.536 19.424 0.3 39.34 0 C5 GHI 205 B 1 
HETATM 11 C C4 GHI . . . N 4 -20.723 4.069 19.666 0.3 39.1 0 C4 GHI 205 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#