data_7T9R # _model_server_result.job_id pu3pnLnkmI2gwn-y6g3QZw _model_server_result.datetime_utc '2025-01-06 05:52:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 7T9R # _exptl.entry_id 7T9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.2 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(R)-2-(FORMYLOXY)-3-(PHOSPHONOOXY)PROPYL PENTANOATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.093 _cell.angle_beta 90.016 _cell.angle_gamma 90.014 _cell.entry_id 7T9R _cell.length_a 27.056 _cell.length_b 33.694 _cell.length_c 36.642 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,Q 1 1 B,K,R 2 1 C,L,M,N,S 3 1 D,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf2 A SG CYS 15 A CYS 15 1_555 A SG CYS 29 A CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 19 A CYS 19 1_555 A SG CYS 37 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf4 B SG CYS 8 B CYS 8 1_555 B SG CYS 36 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 15 B CYS 15 1_555 B SG CYS 29 B CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 B SG CYS 19 B CYS 19 1_555 B SG CYS 37 B CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf7 C SG CYS 8 C CYS 8 1_555 C SG CYS 36 C CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf8 C SG CYS 15 C CYS 15 1_555 C SG CYS 29 C CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf9 C SG CYS 19 C CYS 19 1_555 C SG CYS 37 C CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 D SG CYS 8 D CYS 8 1_555 D SG CYS 36 D CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 D SG CYS 15 D CYS 15 1_555 D SG CYS 29 D CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf12 D SG CYS 19 D CYS 19 1_555 D SG CYS 37 D CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C9 H17 O8 P' _chem_comp.formula_weight 284.2 _chem_comp.id PA6 _chem_comp.mon_nstd_flag . _chem_comp.name '(R)-2-(FORMYLOXY)-3-(PHOSPHONOOXY)PROPYL PENTANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O32 C31 PA6 doub 200 n n C31 O31 PA6 sing 201 n n C31 C32 PA6 sing 202 n n C32 C33 PA6 sing 203 n n C32 H321 PA6 sing 204 n n C32 H322 PA6 sing 205 n n C33 C34 PA6 sing 206 n n C33 H331 PA6 sing 207 n n C33 H332 PA6 sing 208 n n C34 C35 PA6 sing 209 n n C34 H341 PA6 sing 210 n n C34 H342 PA6 sing 211 n n C35 H351 PA6 sing 212 n n C35 H352 PA6 sing 213 n n C35 H353 PA6 sing 214 n n O31 C3 PA6 sing 215 n n C3 C2 PA6 sing 216 n n C3 H31 PA6 sing 217 n n C3 H32 PA6 sing 218 n n C2 O21 PA6 sing 219 n n C2 C1 PA6 sing 220 n n C2 H2 PA6 sing 221 n n O21 C21 PA6 sing 222 n n C21 O22 PA6 doub 223 n n C21 H21 PA6 sing 224 n n C1 O11 PA6 sing 225 n n C1 H11 PA6 sing 226 n n C1 H12 PA6 sing 227 n n O11 P PA6 sing 228 n n P O14 PA6 doub 229 n n P O13 PA6 sing 230 n n P O12 PA6 sing 231 n n O13 HO13 PA6 sing 232 n n O12 HO12 PA6 sing 233 n n # _atom_sites.entry_id 7T9R _atom_sites.fract_transf_matrix[1][1] 0.03696 _atom_sites.fract_transf_matrix[1][2] 0.000009 _atom_sites.fract_transf_matrix[1][3] 0.00001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029679 _atom_sites.fract_transf_matrix[2][3] 0.000048 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 101 101 EDO EDO . F 3 PA6 A 1 102 201 PA6 PA6 . G 3 PA6 A 1 103 301 PA6 PA6 . H 4 PO4 A 1 104 1 PO4 PO4 . I 4 PO4 A 1 105 2 PO4 PO4 . J 4 PO4 A 1 106 3 PO4 PO4 . K 3 PA6 B 1 201 201 PA6 PA6 . L 3 PA6 C 1 101 101 PA6 PA6 . M 2 EDO C 1 102 201 EDO EDO . N 4 PO4 C 1 103 9 PO4 PO4 . O 2 EDO D 1 101 101 EDO EDO . P 4 PO4 D 1 102 8 PO4 PO4 . Q 5 HOH A 1 201 79 HOH HOH . Q 5 HOH A 2 202 54 HOH HOH . Q 5 HOH A 3 203 55 HOH HOH . Q 5 HOH A 4 204 32 HOH HOH . Q 5 HOH A 5 205 136 HOH HOH . Q 5 HOH A 6 206 113 HOH HOH . Q 5 HOH A 7 207 10 HOH HOH . Q 5 HOH A 8 208 101 HOH HOH . Q 5 HOH A 9 209 27 HOH HOH . Q 5 HOH A 10 210 90 HOH HOH . Q 5 HOH A 11 211 81 HOH HOH . Q 5 HOH A 12 212 35 HOH HOH . Q 5 HOH A 13 213 24 HOH HOH . Q 5 HOH A 14 214 7 HOH HOH . Q 5 HOH A 15 215 8 HOH HOH . Q 5 HOH A 16 216 64 HOH HOH . Q 5 HOH A 17 217 1 HOH HOH . Q 5 HOH A 18 218 52 HOH HOH . Q 5 HOH A 19 219 78 HOH HOH . Q 5 HOH A 20 220 39 HOH HOH . Q 5 HOH A 21 221 12 HOH HOH . Q 5 HOH A 22 222 66 HOH HOH . Q 5 HOH A 23 223 122 HOH HOH . Q 5 HOH A 24 224 100 HOH HOH . Q 5 HOH A 25 225 40 HOH HOH . Q 5 HOH A 26 226 130 HOH HOH . Q 5 HOH A 27 227 131 HOH HOH . Q 5 HOH A 28 228 45 HOH HOH . Q 5 HOH A 29 229 77 HOH HOH . Q 5 HOH A 30 230 135 HOH HOH . Q 5 HOH A 31 231 148 HOH HOH . R 5 HOH B 1 301 125 HOH HOH . R 5 HOH B 2 302 119 HOH HOH . R 5 HOH B 3 303 6 HOH HOH . R 5 HOH B 4 304 38 HOH HOH . R 5 HOH B 5 305 96 HOH HOH . R 5 HOH B 6 306 145 HOH HOH . R 5 HOH B 7 307 28 HOH HOH . R 5 HOH B 8 308 47 HOH HOH . R 5 HOH B 9 309 147 HOH HOH . R 5 HOH B 10 310 86 HOH HOH . R 5 HOH B 11 311 4 HOH HOH . R 5 HOH B 12 312 102 HOH HOH . R 5 HOH B 13 313 15 HOH HOH . R 5 HOH B 14 314 29 HOH HOH . R 5 HOH B 15 315 127 HOH HOH . R 5 HOH B 16 316 34 HOH HOH . R 5 HOH B 17 317 111 HOH HOH . R 5 HOH B 18 318 57 HOH HOH . R 5 HOH B 19 319 19 HOH HOH . R 5 HOH B 20 320 72 HOH HOH . R 5 HOH B 21 321 106 HOH HOH . R 5 HOH B 22 322 138 HOH HOH . R 5 HOH B 23 323 44 HOH HOH . R 5 HOH B 24 324 129 HOH HOH . R 5 HOH B 25 325 172 HOH HOH . R 5 HOH B 26 326 132 HOH HOH . R 5 HOH B 27 327 36 HOH HOH . R 5 HOH B 28 328 141 HOH HOH . R 5 HOH B 29 329 108 HOH HOH . R 5 HOH B 30 330 150 HOH HOH . R 5 HOH B 31 331 97 HOH HOH . R 5 HOH B 32 332 139 HOH HOH . R 5 HOH B 33 333 117 HOH HOH . R 5 HOH B 34 334 171 HOH HOH . R 5 HOH B 35 335 31 HOH HOH . R 5 HOH B 36 336 53 HOH HOH . S 5 HOH C 1 201 124 HOH HOH . S 5 HOH C 2 202 85 HOH HOH . S 5 HOH C 3 203 94 HOH HOH . S 5 HOH C 4 204 61 HOH HOH . S 5 HOH C 5 205 87 HOH HOH . S 5 HOH C 6 206 75 HOH HOH . S 5 HOH C 7 207 175 HOH HOH . S 5 HOH C 8 208 51 HOH HOH . S 5 HOH C 9 209 63 HOH HOH . S 5 HOH C 10 210 22 HOH HOH . S 5 HOH C 11 211 42 HOH HOH . S 5 HOH C 12 212 59 HOH HOH . S 5 HOH C 13 213 41 HOH HOH . S 5 HOH C 14 214 21 HOH HOH . S 5 HOH C 15 215 14 HOH HOH . S 5 HOH C 16 216 49 HOH HOH . S 5 HOH C 17 217 126 HOH HOH . S 5 HOH C 18 218 107 HOH HOH . S 5 HOH C 19 219 5 HOH HOH . S 5 HOH C 20 220 88 HOH HOH . S 5 HOH C 21 221 3 HOH HOH . S 5 HOH C 22 222 60 HOH HOH . S 5 HOH C 23 223 99 HOH HOH . S 5 HOH C 24 224 146 HOH HOH . S 5 HOH C 25 225 161 HOH HOH . S 5 HOH C 26 226 80 HOH HOH . S 5 HOH C 27 227 11 HOH HOH . S 5 HOH C 28 228 163 HOH HOH . S 5 HOH C 29 229 110 HOH HOH . S 5 HOH C 30 230 104 HOH HOH . S 5 HOH C 31 231 169 HOH HOH . S 5 HOH C 32 232 121 HOH HOH . S 5 HOH C 33 233 109 HOH HOH . S 5 HOH C 34 234 149 HOH HOH . S 5 HOH C 35 235 23 HOH HOH . S 5 HOH C 36 236 95 HOH HOH . T 5 HOH D 1 201 25 HOH HOH . T 5 HOH D 2 202 114 HOH HOH . T 5 HOH D 3 203 133 HOH HOH . T 5 HOH D 4 204 134 HOH HOH . T 5 HOH D 5 205 69 HOH HOH . T 5 HOH D 6 206 17 HOH HOH . T 5 HOH D 7 207 152 HOH HOH . T 5 HOH D 8 208 48 HOH HOH . T 5 HOH D 9 209 9 HOH HOH . T 5 HOH D 10 210 162 HOH HOH . T 5 HOH D 11 211 92 HOH HOH . T 5 HOH D 12 212 56 HOH HOH . T 5 HOH D 13 213 74 HOH HOH . T 5 HOH D 14 214 76 HOH HOH . T 5 HOH D 15 215 13 HOH HOH . T 5 HOH D 16 216 33 HOH HOH . T 5 HOH D 17 217 174 HOH HOH . T 5 HOH D 18 218 84 HOH HOH . T 5 HOH D 19 219 58 HOH HOH . T 5 HOH D 20 220 65 HOH HOH . T 5 HOH D 21 221 37 HOH HOH . T 5 HOH D 22 222 16 HOH HOH . T 5 HOH D 23 223 93 HOH HOH . T 5 HOH D 24 224 26 HOH HOH . T 5 HOH D 25 225 167 HOH HOH . T 5 HOH D 26 226 115 HOH HOH . T 5 HOH D 27 227 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O32 PA6 . . . F 3 13.267 -2.493 -13.093 1 11.35 ? O32 PA6 102 A 1 HETATM 2 C C31 PA6 . . . F 3 13.455 -2.712 -14.274 1 3.17 ? C31 PA6 102 A 1 HETATM 3 C C32 PA6 . . . F 3 12.249 -2.83 -15.178 1 48.08 ? C32 PA6 102 A 1 HETATM 4 C C33 PA6 . . . F 3 12.652 -3.523 -16.479 1 59.35 ? C33 PA6 102 A 1 HETATM 5 C C34 PA6 . . . F 3 11.609 -4.465 -17.067 1 55.94 ? C34 PA6 102 A 1 HETATM 6 C C35 PA6 . . . F 3 12.19 -5.173 -18.3 1 39.92 ? C35 PA6 102 A 1 HETATM 7 O O31 PA6 . . . F 3 14.817 -2.904 -14.627 1 28.52 ? O31 PA6 102 A 1 HETATM 8 C C3 PA6 . . . F 3 15.388 -2.454 -15.836 1 38.3 ? C3 PA6 102 A 1 HETATM 9 C C2 PA6 . . . F 3 15.563 -0.936 -15.998 1 36.46 ? C2 PA6 102 A 1 HETATM 10 O O21 PA6 . . . F 3 16.658 -0.62 -16.817 1 54.27 ? O21 PA6 102 A 1 HETATM 11 C C21 PA6 . . . F 3 17.688 0.133 -16.237 1 26.66 ? C21 PA6 102 A 1 HETATM 12 O O22 PA6 . . . F 3 18.741 0.204 -16.791 1 47.68 ? O22 PA6 102 A 1 HETATM 13 C C1 PA6 . . . F 3 14.29 -0.47 -16.697 1 45.9 ? C1 PA6 102 A 1 HETATM 14 O O11 PA6 . . . F 3 14.245 0.926 -16.707 1 68.76 ? O11 PA6 102 A 1 HETATM 15 P P PA6 . . . F 3 14.696 1.729 -18.071 1 50.05 ? P PA6 102 A 1 HETATM 16 O O13 PA6 . . . F 3 14.729 3.207 -17.792 1 42.31 ? O13 PA6 102 A 1 HETATM 17 O O14 PA6 . . . F 3 13.717 1.42 -19.182 1 59.31 ? O14 PA6 102 A 1 HETATM 18 O O12 PA6 . . . F 3 16.078 1.268 -18.474 1 54.43 ? O12 PA6 102 A 1 HETATM 19 H H321 PA6 . . . F 3 11.562 -3.35 -14.734 1 57.72 ? H321 PA6 102 A 1 HETATM 20 H H322 PA6 . . . F 3 11.907 -1.944 -15.377 1 57.72 ? H322 PA6 102 A 1 HETATM 21 H H331 PA6 . . . F 3 13.456 -4.037 -16.308 1 71.24 ? H331 PA6 102 A 1 HETATM 22 H H332 PA6 . . . F 3 12.84 -2.837 -17.138 1 71.24 ? H332 PA6 102 A 1 HETATM 23 H H341 PA6 . . . F 3 11.36 -5.126 -16.403 1 67.15 ? H341 PA6 102 A 1 HETATM 24 H H342 PA6 . . . F 3 10.825 -3.956 -17.327 1 67.15 ? H342 PA6 102 A 1 HETATM 25 H H351 PA6 . . . F 3 13.076 -5.508 -18.093 1 47.92 ? H351 PA6 102 A 1 HETATM 26 H H352 PA6 . . . F 3 12.245 -4.546 -19.038 1 47.92 ? H352 PA6 102 A 1 HETATM 27 H H353 PA6 . . . F 3 11.615 -5.914 -18.548 1 47.92 ? H353 PA6 102 A 1 HETATM 28 H H31 PA6 . . . F 3 14.822 -2.763 -16.561 1 45.99 ? H31 PA6 102 A 1 HETATM 29 H H32 PA6 . . . F 3 16.265 -2.86 -15.916 1 45.99 ? H32 PA6 102 A 1 HETATM 30 H H2 PA6 . . . F 3 15.717 -0.516 -15.138 1 43.77 ? H2 PA6 102 A 1 HETATM 31 H H21 PA6 . . . F 3 17.551 0.573 -15.429 1 32.01 ? H21 PA6 102 A 1 HETATM 32 H H11 PA6 . . . F 3 14.284 -0.799 -17.609 1 55.1 ? H11 PA6 102 A 1 HETATM 33 H H12 PA6 . . . F 3 13.517 -0.815 -16.223 1 55.1 ? H12 PA6 102 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #