data_7T9U # _model_server_result.job_id ILAT9KFUzHQvGFfuSA4dtQ _model_server_result.datetime_utc '2024-10-19 03:53:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7T9U # _exptl.entry_id 7T9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.427 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,4S)-2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-4-(prop-2-en-1-yl)-4,5-dihydroimidazo[1,5,4-de][1,4]benzoxazine-8-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T9U _cell.length_a 79.906 _cell.length_b 89.348 _cell.length_c 73.298 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 36.649 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 58 A ASP 205 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 A OE1 GLU 169 A GLU 316 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc3 A OE2 GLU 169 A GLU 316 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 A O VAL 194 A VAL 341 1_555 B CA CA . A CA 401 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 B CA CA . A CA 401 1_555 D O HOH . A HOH 502 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 B CA CA . A CA 401 1_555 D O HOH . A HOH 504 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc7 B CA CA . A CA 401 1_555 D O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C20 H22 N6 O3' _chem_comp.formula_weight 394.427 _chem_comp.id GD2 _chem_comp.mon_nstd_flag . _chem_comp.name (3S,4S)-2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-4-(prop-2-en-1-yl)-4,5-dihydroimidazo[1,5,4-de][1,4]benzoxazine-8-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 C09 GD2 sing 83 n n O11 C09 GD2 doub 84 n n C09 C08 GD2 sing 85 n n C12 C08 GD2 doub 86 n y C12 C13 GD2 sing 87 n y C08 C07 GD2 sing 88 n y C17 O18 GD2 sing 89 n n C17 C16 GD2 sing 90 n n O18 C13 GD2 sing 91 n n C13 C14 GD2 doub 92 n y C07 C06 GD2 doub 93 n y C14 C06 GD2 sing 94 n y C14 N15 GD2 sing 95 n y C06 N05 GD2 sing 96 n y N15 C16 GD2 sing 97 n n N15 C04 GD2 sing 98 n y C16 C19 GD2 sing 99 n n N05 C04 GD2 doub 100 n y C04 N03 GD2 sing 101 n n C28 N27 GD2 sing 102 n n C28 C29 GD2 sing 103 n n O01 C02 GD2 doub 104 n n N03 C02 GD2 sing 105 n n C02 C22 GD2 sing 106 n n N27 C22 GD2 sing 107 n y N27 N26 GD2 sing 108 n y C22 C23 GD2 doub 109 n y C19 C20 GD2 sing 110 n n N26 C24 GD2 doub 111 n y C20 C21 GD2 doub 112 n n C23 C24 GD2 sing 113 n y C24 C25 GD2 sing 114 n n C12 H1 GD2 sing 115 n n C07 H2 GD2 sing 116 n n C16 H3 GD2 sing 117 n n C17 H4 GD2 sing 118 n n C17 H5 GD2 sing 119 n n C19 H6 GD2 sing 120 n n C19 H7 GD2 sing 121 n n C20 H8 GD2 sing 122 n n C21 H9 GD2 sing 123 n n C21 H10 GD2 sing 124 n n C23 H11 GD2 sing 125 n n C25 H12 GD2 sing 126 n n C25 H13 GD2 sing 127 n n C25 H14 GD2 sing 128 n n C28 H15 GD2 sing 129 n n C28 H16 GD2 sing 130 n n C29 H17 GD2 sing 131 n n C29 H18 GD2 sing 132 n n C29 H19 GD2 sing 133 n n N03 H20 GD2 sing 134 n n N10 H21 GD2 sing 135 n n N10 H22 GD2 sing 136 n n # _atom_sites.entry_id 7T9U _atom_sites.fract_transf_matrix[1][1] 0.012515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 3 GD2 A 1 402 601 GD2 224 . D 4 HOH A 1 501 1002 HOH HOH . D 4 HOH A 2 502 1007 HOH HOH . D 4 HOH A 3 503 1003 HOH HOH . D 4 HOH A 4 504 1006 HOH HOH . D 4 HOH A 5 505 1001 HOH HOH . D 4 HOH A 6 506 1004 HOH HOH . D 4 HOH A 7 507 1005 HOH HOH . D 4 HOH A 8 508 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 GD2 . . . C 3 -2.047 -30.892 13.456 1 71.6 ? C12 GD2 402 A 1 HETATM 2 C C13 GD2 . . . C 3 -1.131 -29.828 13.875 1 74.52 ? C13 GD2 402 A 1 HETATM 3 C C14 GD2 . . . C 3 -1.679 -28.638 14.336 1 68.3 ? C14 GD2 402 A 1 HETATM 4 C C02 GD2 . . . C 3 -2.496 -24.284 15.738 1 63.61 ? C02 GD2 402 A 1 HETATM 5 C C04 GD2 . . . C 3 -1.907 -26.625 15.153 1 59.63 ? C04 GD2 402 A 1 HETATM 6 C C06 GD2 . . . C 3 -3.041 -28.39 14.418 1 69.44 ? C06 GD2 402 A 1 HETATM 7 C C07 GD2 . . . C 3 -3.954 -29.43 14.007 1 69.76 ? C07 GD2 402 A 1 HETATM 8 C C08 GD2 . . . C 3 -3.428 -30.66 13.54 1 71.8 ? C08 GD2 402 A 1 HETATM 9 C C09 GD2 . . . C 3 -4.456 -31.714 13.109 1 82.34 ? C09 GD2 402 A 1 HETATM 10 C C16 GD2 . . . C 3 0.507 -27.607 14.756 1 75.79 ? C16 GD2 402 A 1 HETATM 11 C C17 GD2 . . . C 3 1.001 -28.697 13.781 1 74.24 ? C17 GD2 402 A 1 HETATM 12 C C19 GD2 . . . C 3 0.979 -27.854 16.197 1 76.66 ? C19 GD2 402 A 1 HETATM 13 C C20 GD2 . . . C 3 2.493 -27.688 16.419 1 90.89 ? C20 GD2 402 A 1 HETATM 14 C C21 GD2 . . . C 3 2.955 -27.073 17.477 1 86.13 ? C21 GD2 402 A 1 HETATM 15 C C22 GD2 . . . C 3 -1.976 -22.894 16.161 1 54.32 ? C22 GD2 402 A 1 HETATM 16 C C23 GD2 . . . C 3 -2.725 -21.942 16.758 1 56.16 ? C23 GD2 402 A 1 HETATM 17 C C24 GD2 . . . C 3 -1.878 -20.843 16.926 1 67.71 ? C24 GD2 402 A 1 HETATM 18 C C25 GD2 . . . C 3 -2.265 -19.522 17.571 1 60.5 ? C25 GD2 402 A 1 HETATM 19 C C28 GD2 . . . C 3 0.369 -23.097 15.286 1 62.14 ? C28 GD2 402 A 1 HETATM 20 C C29 GD2 . . . C 3 1.316 -23.663 16.361 1 69.26 ? C29 GD2 402 A 1 HETATM 21 N N03 GD2 . . . C 3 -1.49 -25.325 15.622 1 67.58 ? N03 GD2 402 A 1 HETATM 22 N N05 GD2 . . . C 3 -3.172 -27.067 14.927 1 62.1 ? N05 GD2 402 A 1 HETATM 23 N N10 GD2 . . . C 3 -5.808 -31.266 12.803 1 85.84 ? N10 GD2 402 A 1 HETATM 24 N N15 GD2 . . . C 3 -0.957 -27.571 14.746 1 67.66 ? N15 GD2 402 A 1 HETATM 25 N N26 GD2 . . . C 3 -0.682 -21.147 16.412 1 70.52 ? N26 GD2 402 A 1 HETATM 26 N N27 GD2 . . . C 3 -0.755 -22.42 15.922 1 62.15 ? N27 GD2 402 A 1 HETATM 27 O O01 GD2 . . . C 3 -3.631 -24.478 15.507 1 58.2 ? O01 GD2 402 A 1 HETATM 28 O O11 GD2 . . . C 3 -4.158 -32.856 12.979 1 81.1 ? O11 GD2 402 A 1 HETATM 29 O O18 GD2 . . . C 3 0.309 -29.942 13.842 1 78.39 ? O18 GD2 402 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #