data_7TAI # _model_server_result.job_id 1sl-6q8CbztpsIqTBkQyuw _model_server_result.datetime_utc '2024-11-24 21:08:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":503}' # _entry.id 7TAI # _exptl.entry_id 7TAI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TAI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 L N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 61 B ARG 61 1_555 F O3X NAP . B NAP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale2 B NH2 ARG 61 A ARG 61 1_555 L O3X NAP . A NAP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale3 C NH2 ARG 61 C ARG 61 1_555 R O3X NAP . C NAP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 A NE2 HIS 316 B HIS 316 1_555 E FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc2 A NE2 HIS 409 B HIS 409 1_555 E FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc3 B NE2 HIS 316 A HIS 316 1_555 K FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc4 B NE2 HIS 409 A HIS 409 1_555 K FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc5 C NE2 HIS 316 C HIS 316 1_555 Q FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc6 C NE2 HIS 409 C HIS 409 1_555 Q FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 618 n n PA O2A NAP sing 619 n n PA O5B NAP sing 620 n n PA O3 NAP sing 621 n n O2A HOA2 NAP sing 622 n n O5B C5B NAP sing 623 n n C5B C4B NAP sing 624 n n C5B H51A NAP sing 625 n n C5B H52A NAP sing 626 n n C4B O4B NAP sing 627 n n C4B C3B NAP sing 628 n n C4B H4B NAP sing 629 n n O4B C1B NAP sing 630 n n C3B O3B NAP sing 631 n n C3B C2B NAP sing 632 n n C3B H3B NAP sing 633 n n O3B HO3A NAP sing 634 n n C2B O2B NAP sing 635 n n C2B C1B NAP sing 636 n n C2B H2B NAP sing 637 n n O2B P2B NAP sing 638 n n C1B N9A NAP sing 639 n n C1B H1B NAP sing 640 n n N9A C8A NAP sing 641 n y N9A C4A NAP sing 642 n y C8A N7A NAP doub 643 n y C8A H8A NAP sing 644 n n N7A C5A NAP sing 645 n y C5A C6A NAP sing 646 n y C5A C4A NAP doub 647 n y C6A N6A NAP sing 648 n n C6A N1A NAP doub 649 n y N6A H61A NAP sing 650 n n N6A H62A NAP sing 651 n n N1A C2A NAP sing 652 n y C2A N3A NAP doub 653 n y C2A H2A NAP sing 654 n n N3A C4A NAP sing 655 n y O3 PN NAP sing 656 n n PN O1N NAP doub 657 n n PN O2N NAP sing 658 n n PN O5D NAP sing 659 n n O5D C5D NAP sing 660 n n C5D C4D NAP sing 661 n n C5D H51N NAP sing 662 n n C5D H52N NAP sing 663 n n C4D O4D NAP sing 664 n n C4D C3D NAP sing 665 n n C4D H4D NAP sing 666 n n O4D C1D NAP sing 667 n n C3D O3D NAP sing 668 n n C3D C2D NAP sing 669 n n C3D H3D NAP sing 670 n n O3D HO3N NAP sing 671 n n C2D O2D NAP sing 672 n n C2D C1D NAP sing 673 n n C2D H2D NAP sing 674 n n O2D HO2N NAP sing 675 n n C1D N1N NAP sing 676 n n C1D H1D NAP sing 677 n n N1N C2N NAP sing 678 n y N1N C6N NAP doub 679 n y C2N C3N NAP doub 680 n y C2N H2N NAP sing 681 n n C3N C7N NAP sing 682 n n C3N C4N NAP sing 683 n y C7N O7N NAP doub 684 n n C7N N7N NAP sing 685 n n N7N H71N NAP sing 686 n n N7N H72N NAP sing 687 n n C4N C5N NAP doub 688 n y C4N H4N NAP sing 689 n n C5N C6N NAP sing 690 n y C5N H5N NAP sing 691 n n C6N H6N NAP sing 692 n n P2B O1X NAP doub 693 n n P2B O2X NAP sing 694 n n P2B O3X NAP sing 695 n n O2X HOP2 NAP sing 696 n n O3X HOP3 NAP sing 697 n n # _atom_sites.entry_id 7TAI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD B 1 501 501 FAD FAD . E 3 HEM B 1 502 502 HEM HEM . F 4 NAP B 1 503 503 NAP NAP . G 5 LBN B 1 504 504 LBN LBN . H 6 CLR B 1 505 505 CLR CLR . I 6 CLR B 1 506 506 CLR CLR . J 2 FAD A 1 501 501 FAD FAD . K 3 HEM A 1 502 502 HEM HEM . L 4 NAP A 1 503 503 NAP NAP . M 5 LBN A 1 504 504 LBN LBN . N 6 CLR A 1 505 505 CLR CLR . O 6 CLR A 1 506 506 CLR CLR . P 2 FAD C 1 501 501 FAD FAD . Q 3 HEM C 1 502 502 HEM HEM . R 4 NAP C 1 503 503 NAP NAP . S 5 LBN C 1 504 504 LBN LBN . T 6 CLR C 1 505 505 CLR CLR . U 6 CLR C 1 506 506 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . L 4 122.706 160.517 106.492 1 54.3 ? PA NAP 503 A 1 HETATM 2 O O1A NAP . . . L 4 123.822 160.932 107.361 1 54.3 ? O1A NAP 503 A 1 HETATM 3 O O2A NAP . . . L 4 121.355 161.133 106.838 1 54.3 ? O2A NAP 503 A 1 HETATM 4 O O5B NAP . . . L 4 122.99 160.867 104.937 1 54.3 ? O5B NAP 503 A 1 HETATM 5 C C5B NAP . . . L 4 121.969 161.095 103.945 1 54.3 ? C5B NAP 503 A 1 HETATM 6 C C4B NAP . . . L 4 122.562 160.867 102.579 1 54.3 ? C4B NAP 503 A 1 HETATM 7 O O4B NAP . . . L 4 121.504 160.833 101.596 1 54.3 ? O4B NAP 503 A 1 HETATM 8 C C3B NAP . . . L 4 123.549 161.939 102.113 1 54.3 ? C3B NAP 503 A 1 HETATM 9 O O3B NAP . . . L 4 124.784 161.349 101.726 1 54.3 ? O3B NAP 503 A 1 HETATM 10 C C2B NAP . . . L 4 122.883 162.598 100.909 1 54.3 ? C2B NAP 503 A 1 HETATM 11 O O2B NAP . . . L 4 123.891 162.775 99.892 1 54.3 ? O2B NAP 503 A 1 HETATM 12 C C1B NAP . . . L 4 121.912 161.525 100.433 1 54.3 ? C1B NAP 503 A 1 HETATM 13 N N9A NAP . . . L 4 120.725 162.059 99.775 1 54.3 ? N9A NAP 503 A 1 HETATM 14 C C8A NAP . . . L 4 120.338 161.859 98.476 1 54.3 ? C8A NAP 503 A 1 HETATM 15 N N7A NAP . . . L 4 119.218 162.455 98.153 1 54.3 ? N7A NAP 503 A 1 HETATM 16 C C5A NAP . . . L 4 118.838 163.096 99.323 1 54.3 ? C5A NAP 503 A 1 HETATM 17 C C6A NAP . . . L 4 117.734 163.908 99.646 1 54.3 ? C6A NAP 503 A 1 HETATM 18 N N6A NAP . . . L 4 116.766 164.226 98.781 1 54.3 ? N6A NAP 503 A 1 HETATM 19 N N1A NAP . . . L 4 117.658 164.392 100.905 1 54.3 ? N1A NAP 503 A 1 HETATM 20 C C2A NAP . . . L 4 118.624 164.08 101.773 1 54.3 ? C2A NAP 503 A 1 HETATM 21 N N3A NAP . . . L 4 119.708 163.325 101.583 1 54.3 ? N3A NAP 503 A 1 HETATM 22 C C4A NAP . . . L 4 119.758 162.86 100.331 1 54.3 ? C4A NAP 503 A 1 HETATM 23 O O3 NAP . . . L 4 122.515 158.938 106.506 1 54.3 ? O3 NAP 503 A 1 HETATM 24 P PN NAP . . . L 4 123.467 157.741 106.972 1 54.3 ? PN NAP 503 A 1 HETATM 25 O O1N NAP . . . L 4 123.479 157.678 108.447 1 54.3 ? O1N NAP 503 A 1 HETATM 26 O O2N NAP . . . L 4 124.75 157.835 106.237 1 54.3 ? O2N NAP 503 A 1 HETATM 27 O O5D NAP . . . L 4 122.656 156.476 106.446 1 54.3 ? O5D NAP 503 A 1 HETATM 28 C C5D NAP . . . L 4 122.915 155.945 105.131 1 54.3 ? C5D NAP 503 A 1 HETATM 29 C C4D NAP . . . L 4 122.024 154.752 104.894 1 54.3 ? C4D NAP 503 A 1 HETATM 30 O O4D NAP . . . L 4 122.593 153.587 105.53 1 54.3 ? O4D NAP 503 A 1 HETATM 31 C C3D NAP . . . L 4 120.6 154.874 105.43 1 54.3 ? C3D NAP 503 A 1 HETATM 32 O O3D NAP . . . L 4 119.672 154.261 104.544 1 54.3 ? O3D NAP 503 A 1 HETATM 33 C C2D NAP . . . L 4 120.679 154.142 106.77 1 54.3 ? C2D NAP 503 A 1 HETATM 34 O O2D NAP . . . L 4 119.426 153.58 107.14 1 54.3 ? O2D NAP 503 A 1 HETATM 35 C C1D NAP . . . L 4 121.69 153.043 106.456 1 54.3 ? C1D NAP 503 A 1 HETATM 36 N N1N NAP . . . L 4 122.455 152.614 107.668 1 54.3 ? N1N NAP 503 A 1 HETATM 37 C C2N NAP . . . L 4 123.073 153.552 108.403 1 54.3 ? C2N NAP 503 A 1 HETATM 38 C C3N NAP . . . L 4 123.798 153.197 109.524 1 54.3 ? C3N NAP 503 A 1 HETATM 39 C C7N NAP . . . L 4 124.482 154.259 110.333 1 54.3 ? C7N NAP 503 A 1 HETATM 40 O O7N NAP . . . L 4 124.536 155.415 109.898 1 54.3 ? O7N NAP 503 A 1 HETATM 41 N N7N NAP . . . L 4 125.004 153.906 111.499 1 54.3 ? N7N NAP 503 A 1 HETATM 42 C C4N NAP . . . L 4 123.871 151.853 109.87 1 54.3 ? C4N NAP 503 A 1 HETATM 43 C C5N NAP . . . L 4 123.224 150.905 109.098 1 54.3 ? C5N NAP 503 A 1 HETATM 44 C C6N NAP . . . L 4 122.512 151.306 107.988 1 54.3 ? C6N NAP 503 A 1 HETATM 45 P P2B NAP . . . L 4 124.41 164.134 99.24 1 54.3 ? P2B NAP 503 A 1 HETATM 46 O O1X NAP . . . L 4 125.663 164.573 99.909 1 54.3 ? O1X NAP 503 A 1 HETATM 47 O O2X NAP . . . L 4 124.599 163.844 97.749 1 54.3 ? O2X NAP 503 A 1 HETATM 48 O O3X NAP . . . L 4 123.261 165.137 99.393 1 54.3 ? O3X NAP 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #