data_7TAY # _model_server_result.job_id xSM05jQMiXPNQ6CAT8upxg _model_server_result.datetime_utc '2024-11-23 20:25:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1001}' # _entry.id 7TAY # _exptl.entry_id 7TAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TAY _cell.length_a 153.392 _cell.length_b 153.392 _cell.length_c 590.928 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 153.392 153.392 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 N N N ? 14 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 U CAB HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 U CAC HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 U FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 U FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 W FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 W FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 W FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 W FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 651 n n CHA C4D HEM doub 652 n n CHA HHA HEM sing 653 n n CHB C4A HEM sing 654 n n CHB C1B HEM doub 655 n n CHB HHB HEM sing 656 n n CHC C4B HEM sing 657 n n CHC C1C HEM doub 658 n n CHC HHC HEM sing 659 n n CHD C4C HEM doub 660 n n CHD C1D HEM sing 661 n n CHD HHD HEM sing 662 n n C1A C2A HEM doub 663 n y C1A NA HEM sing 664 n y C2A C3A HEM sing 665 n y C2A CAA HEM sing 666 n n C3A C4A HEM doub 667 n y C3A CMA HEM sing 668 n n C4A NA HEM sing 669 n y CMA HMA HEM sing 670 n n CMA HMAA HEM sing 671 n n CMA HMAB HEM sing 672 n n CAA CBA HEM sing 673 n n CAA HAA HEM sing 674 n n CAA HAAA HEM sing 675 n n CBA CGA HEM sing 676 n n CBA HBA HEM sing 677 n n CBA HBAA HEM sing 678 n n CGA O1A HEM doub 679 n n CGA O2A HEM sing 680 n n C1B C2B HEM sing 681 n n C1B NB HEM sing 682 n n C2B C3B HEM doub 683 n n C2B CMB HEM sing 684 n n C3B C4B HEM sing 685 n n C3B CAB HEM sing 686 n n C4B NB HEM doub 687 n n CMB HMB HEM sing 688 n n CMB HMBA HEM sing 689 n n CMB HMBB HEM sing 690 n n CAB CBB HEM doub 691 n n CAB HAB HEM sing 692 n n CBB HBB HEM sing 693 n n CBB HBBA HEM sing 694 n n C1C C2C HEM sing 695 n y C1C NC HEM sing 696 n y C2C C3C HEM doub 697 n y C2C CMC HEM sing 698 n n C3C C4C HEM sing 699 n y C3C CAC HEM sing 700 n n C4C NC HEM sing 701 n y CMC HMC HEM sing 702 n n CMC HMCA HEM sing 703 n n CMC HMCB HEM sing 704 n n CAC CBC HEM doub 705 n n CAC HAC HEM sing 706 n n CBC HBC HEM sing 707 n n CBC HBCA HEM sing 708 n n C1D C2D HEM sing 709 n n C1D ND HEM doub 710 n n C2D C3D HEM doub 711 n n C2D CMD HEM sing 712 n n C3D C4D HEM sing 713 n n C3D CAD HEM sing 714 n n C4D ND HEM sing 715 n n CMD HMD HEM sing 716 n n CMD HMDA HEM sing 717 n n CMD HMDB HEM sing 718 n n CAD CBD HEM sing 719 n n CAD HAD HEM sing 720 n n CAD HADA HEM sing 721 n n CBD CGD HEM sing 722 n n CBD HBD HEM sing 723 n n CBD HBDA HEM sing 724 n n CGD O1D HEM doub 725 n n CGD O2D HEM sing 726 n n O2A H2A HEM sing 727 n n O2D H2D HEM sing 728 n n FE NA HEM sing 729 n n FE NB HEM sing 730 n n FE NC HEM sing 731 n n FE ND HEM sing 732 n n # _atom_sites.entry_id 7TAY _atom_sites.fract_transf_matrix[1][1] 0.006519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 6PE A 1 501 2 6PE 6PE . M 13 CDL A 1 502 8 CDL CDL . N 14 HEM C 1 1001 1001 HEM HEM . O 14 HEM C 1 1002 1002 HEM HEM . P 15 PQU C 1 1003 1101 PQU PQU . Q 16 8PE C 1 1004 3 8PE 8PE . R 17 PEF C 1 1005 4 PEF PEF . S 13 CDL C 1 1006 6 CDL CDL . T 18 CL C 1 1007 9 CL CL . U 19 HEC D 1 1001 1001 HEC HEC . V 13 CDL D 1 1002 7 CDL CDL . W 20 FES E 1 1001 1001 FES FES . X 21 PX4 J 1 101 5 PX4 PX4 . Y 12 6PE K 1 101 1 6PE 6PE . Z 22 HOH C 1 1101 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . N 14 67.655 69.327 168.036 1 101.45 ? CHA HEM 1001 C 1 HETATM 2 C CHB HEM . . . N 14 67.102 67.277 163.636 1 97.94 ? CHB HEM 1001 C 1 HETATM 3 C CHC HEM . . . N 14 69.246 71.123 161.572 1 93.56 ? CHC HEM 1001 C 1 HETATM 4 C CHD HEM . . . N 14 69.784 73.164 165.96 1 96.51 ? CHD HEM 1001 C 1 HETATM 5 C C1A HEM . . . N 14 67.314 68.444 167.027 1 102.29 ? C1A HEM 1001 C 1 HETATM 6 C C2A HEM . . . N 14 66.646 67.171 167.205 1 102.65 ? C2A HEM 1001 C 1 HETATM 7 C C3A HEM . . . N 14 66.485 66.607 166.007 1 99.59 ? C3A HEM 1001 C 1 HETATM 8 C C4A HEM . . . N 14 67.061 67.494 165.007 1 100.77 ? C4A HEM 1001 C 1 HETATM 9 C CMA HEM . . . N 14 65.808 65.239 165.745 1 98.38 ? CMA HEM 1001 C 1 HETATM 10 C CAA HEM . . . N 14 66.164 66.592 168.553 1 107.23 ? CAA HEM 1001 C 1 HETATM 11 C CBA HEM . . . N 14 65.005 67.463 169.035 1 111.22 ? CBA HEM 1001 C 1 HETATM 12 C CGA HEM . . . N 14 64.509 66.995 170.376 1 117.68 ? CGA HEM 1001 C 1 HETATM 13 O O1A HEM . . . N 14 63.788 67.785 171.036 1 118.72 ? O1A HEM 1001 C 1 HETATM 14 O O2A HEM . . . N 14 64.829 65.85 170.795 1 121.44 ? O2A HEM 1001 C 1 HETATM 15 C C1B HEM . . . N 14 67.618 68.133 162.679 1 97.97 ? C1B HEM 1001 C 1 HETATM 16 C C2B HEM . . . N 14 67.653 67.915 161.24 1 94.27 ? C2B HEM 1001 C 1 HETATM 17 C C3B HEM . . . N 14 68.244 68.987 160.674 1 93.77 ? C3B HEM 1001 C 1 HETATM 18 C C4B HEM . . . N 14 68.61 69.906 161.737 1 96.01 ? C4B HEM 1001 C 1 HETATM 19 C CMB HEM . . . N 14 67.071 66.658 160.552 1 91.56 ? CMB HEM 1001 C 1 HETATM 20 C CAB HEM . . . N 14 68.545 69.3 159.186 1 91.1 ? CAB HEM 1001 C 1 HETATM 21 C CBB HEM . . . N 14 68.633 68.364 158.232 1 92.83 ? CBB HEM 1001 C 1 HETATM 22 C C1C HEM . . . N 14 69.588 72.018 162.574 1 95.26 ? C1C HEM 1001 C 1 HETATM 23 C C2C HEM . . . N 14 70.241 73.31 162.402 1 90.58 ? C2C HEM 1001 C 1 HETATM 24 C C3C HEM . . . N 14 70.39 73.872 163.62 1 92.07 ? C3C HEM 1001 C 1 HETATM 25 C C4C HEM . . . N 14 69.826 72.953 164.596 1 97.4 ? C4C HEM 1001 C 1 HETATM 26 C CMC HEM . . . N 14 70.67 73.885 161.035 1 85.18 ? CMC HEM 1001 C 1 HETATM 27 C CAC HEM . . . N 14 71.006 75.233 164.059 1 90.59 ? CAC HEM 1001 C 1 HETATM 28 C CBC HEM . . . N 14 71.439 76.202 163.247 1 90.16 ? CBC HEM 1001 C 1 HETATM 29 C C1D HEM . . . N 14 69.267 72.313 166.908 1 100.3 ? C1D HEM 1001 C 1 HETATM 30 C C2D HEM . . . N 14 69.262 72.542 168.339 1 98.88 ? C2D HEM 1001 C 1 HETATM 31 C C3D HEM . . . N 14 68.657 71.5 168.924 1 100.55 ? C3D HEM 1001 C 1 HETATM 32 C C4D HEM . . . N 14 68.288 70.548 167.88 1 102.29 ? C4D HEM 1001 C 1 HETATM 33 C CMD HEM . . . N 14 69.833 73.798 169.037 1 96.94 ? CMD HEM 1001 C 1 HETATM 34 C CAD HEM . . . N 14 68.458 71.314 170.449 1 99.81 ? CAD HEM 1001 C 1 HETATM 35 C CBD HEM . . . N 14 67.089 71.802 170.917 1 101.42 ? CBD HEM 1001 C 1 HETATM 36 C CGD HEM . . . N 14 66.086 70.678 170.943 1 104.98 ? CGD HEM 1001 C 1 HETATM 37 O O1D HEM . . . N 14 64.941 70.913 170.484 1 107.18 ? O1D HEM 1001 C 1 HETATM 38 O O2D HEM . . . N 14 66.393 69.565 171.446 1 106.34 ? O2D HEM 1001 C 1 HETATM 39 N NA HEM . . . N 14 67.556 68.606 165.672 1 93.93 ? NA HEM 1001 C 1 HETATM 40 N NB HEM . . . N 14 68.215 69.355 162.943 1 92.63 ? NB HEM 1001 C 1 HETATM 41 N NC HEM . . . N 14 69.351 71.838 163.93 1 91.59 ? NC HEM 1001 C 1 HETATM 42 N ND HEM . . . N 14 68.672 71.09 166.663 1 95.65 ? ND HEM 1001 C 1 HETATM 43 FE FE HEM . . . N 14 68.457 70.256 164.806 1 89.66 ? FE HEM 1001 C 1 HETATM 44 H HHB HEM . . . N 14 66.726 66.431 163.313 1 117.64 ? HHB HEM 1001 C 1 HETATM 45 H HHC HEM . . . N 14 69.477 71.378 160.655 1 112.4 ? HHC HEM 1001 C 1 HETATM 46 H HHD HEM . . . N 14 70.162 74.008 166.286 1 115.94 ? HHD HEM 1001 C 1 HETATM 47 H HMA HEM . . . N 14 65.862 65.026 164.79 1 118.17 ? HMA HEM 1001 C 1 HETATM 48 H HMAA HEM . . . N 14 64.868 65.282 166.017 1 118.17 ? HMAA HEM 1001 C 1 HETATM 49 H HMAB HEM . . . N 14 66.266 64.543 166.261 1 118.17 ? HMAB HEM 1001 C 1 HETATM 50 H HAA HEM . . . N 14 66.886 66.614 169.2 1 128.8 ? HAA HEM 1001 C 1 HETATM 51 H HAAA HEM . . . N 14 65.864 65.678 168.433 1 128.8 ? HAAA HEM 1001 C 1 HETATM 52 H HBA HEM . . . N 14 64.28 67.412 168.393 1 133.59 ? HBA HEM 1001 C 1 HETATM 53 H HBAA HEM . . . N 14 65.307 68.382 169.11 1 133.59 ? HBAA HEM 1001 C 1 HETATM 54 H HMB HEM . . . N 14 66.754 66.891 159.666 1 109.99 ? HMB HEM 1001 C 1 HETATM 55 H HMBA HEM . . . N 14 66.332 66.313 161.079 1 109.99 ? HMBA HEM 1001 C 1 HETATM 56 H HMBB HEM . . . N 14 67.76 65.979 160.48 1 109.99 ? HMBB HEM 1001 C 1 HETATM 57 H HAB HEM . . . N 14 68.675 70.217 158.934 1 109.44 ? HAB HEM 1001 C 1 HETATM 58 H HBB HEM . . . N 14 68.823 68.622 157.317 1 111.52 ? HBB HEM 1001 C 1 HETATM 59 H HBBA HEM . . . N 14 68.505 67.429 158.457 1 111.52 ? HBBA HEM 1001 C 1 HETATM 60 H HMC HEM . . . N 14 70.256 74.752 160.904 1 102.33 ? HMC HEM 1001 C 1 HETATM 61 H HMCA HEM . . . N 14 70.389 73.283 160.328 1 102.33 ? HMCA HEM 1001 C 1 HETATM 62 H HMCB HEM . . . N 14 71.635 73.98 161.012 1 102.33 ? HMCB HEM 1001 C 1 HETATM 63 H HAC HEM . . . N 14 71.082 75.391 165.003 1 108.83 ? HAC HEM 1001 C 1 HETATM 64 H HBC HEM . . . N 14 71.809 77.018 163.619 1 108.31 ? HBC HEM 1001 C 1 HETATM 65 H HBCA HEM . . . N 14 71.383 76.089 162.285 1 108.31 ? HBCA HEM 1001 C 1 HETATM 66 H HMD HEM . . . N 14 70.812 73.759 169.031 1 116.45 ? HMD HEM 1001 C 1 HETATM 67 H HMDA HEM . . . N 14 69.513 73.831 169.962 1 116.45 ? HMDA HEM 1001 C 1 HETATM 68 H HMDB HEM . . . N 14 69.535 74.601 168.56 1 116.45 ? HMDB HEM 1001 C 1 HETATM 69 H HAD HEM . . . N 14 69.145 71.815 170.917 1 119.89 ? HAD HEM 1001 C 1 HETATM 70 H HADA HEM . . . N 14 68.544 70.372 170.663 1 119.89 ? HADA HEM 1001 C 1 HETATM 71 H HBD HEM . . . N 14 66.775 72.491 170.31 1 121.82 ? HBD HEM 1001 C 1 HETATM 72 H HBDA HEM . . . N 14 67.173 72.171 171.81 1 121.82 ? HBDA HEM 1001 C 1 HETATM 73 H HHA HEM . . . N 14 67.426 69.063 168.952 1 121.87 ? HHA HEM 1001 C 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 73 #