data_7TAY # _model_server_result.job_id Q2FR9qnu9Oszd_Tuf6LqEg _model_server_result.datetime_utc '2024-11-12 23:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1002}' # _entry.id 7TAY # _exptl.entry_id 7TAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TAY _cell.length_a 153.392 _cell.length_b 153.392 _cell.length_c 590.928 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 153.392 153.392 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 N N N ? 14 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 U CAB HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 U CAC HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 U FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 U FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 W FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 W FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 W FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 W FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 651 n n CHA C4D HEM doub 652 n n CHA HHA HEM sing 653 n n CHB C4A HEM sing 654 n n CHB C1B HEM doub 655 n n CHB HHB HEM sing 656 n n CHC C4B HEM sing 657 n n CHC C1C HEM doub 658 n n CHC HHC HEM sing 659 n n CHD C4C HEM doub 660 n n CHD C1D HEM sing 661 n n CHD HHD HEM sing 662 n n C1A C2A HEM doub 663 n y C1A NA HEM sing 664 n y C2A C3A HEM sing 665 n y C2A CAA HEM sing 666 n n C3A C4A HEM doub 667 n y C3A CMA HEM sing 668 n n C4A NA HEM sing 669 n y CMA HMA HEM sing 670 n n CMA HMAA HEM sing 671 n n CMA HMAB HEM sing 672 n n CAA CBA HEM sing 673 n n CAA HAA HEM sing 674 n n CAA HAAA HEM sing 675 n n CBA CGA HEM sing 676 n n CBA HBA HEM sing 677 n n CBA HBAA HEM sing 678 n n CGA O1A HEM doub 679 n n CGA O2A HEM sing 680 n n C1B C2B HEM sing 681 n n C1B NB HEM sing 682 n n C2B C3B HEM doub 683 n n C2B CMB HEM sing 684 n n C3B C4B HEM sing 685 n n C3B CAB HEM sing 686 n n C4B NB HEM doub 687 n n CMB HMB HEM sing 688 n n CMB HMBA HEM sing 689 n n CMB HMBB HEM sing 690 n n CAB CBB HEM doub 691 n n CAB HAB HEM sing 692 n n CBB HBB HEM sing 693 n n CBB HBBA HEM sing 694 n n C1C C2C HEM sing 695 n y C1C NC HEM sing 696 n y C2C C3C HEM doub 697 n y C2C CMC HEM sing 698 n n C3C C4C HEM sing 699 n y C3C CAC HEM sing 700 n n C4C NC HEM sing 701 n y CMC HMC HEM sing 702 n n CMC HMCA HEM sing 703 n n CMC HMCB HEM sing 704 n n CAC CBC HEM doub 705 n n CAC HAC HEM sing 706 n n CBC HBC HEM sing 707 n n CBC HBCA HEM sing 708 n n C1D C2D HEM sing 709 n n C1D ND HEM doub 710 n n C2D C3D HEM doub 711 n n C2D CMD HEM sing 712 n n C3D C4D HEM sing 713 n n C3D CAD HEM sing 714 n n C4D ND HEM sing 715 n n CMD HMD HEM sing 716 n n CMD HMDA HEM sing 717 n n CMD HMDB HEM sing 718 n n CAD CBD HEM sing 719 n n CAD HAD HEM sing 720 n n CAD HADA HEM sing 721 n n CBD CGD HEM sing 722 n n CBD HBD HEM sing 723 n n CBD HBDA HEM sing 724 n n CGD O1D HEM doub 725 n n CGD O2D HEM sing 726 n n O2A H2A HEM sing 727 n n O2D H2D HEM sing 728 n n FE NA HEM sing 729 n n FE NB HEM sing 730 n n FE NC HEM sing 731 n n FE ND HEM sing 732 n n # _atom_sites.entry_id 7TAY _atom_sites.fract_transf_matrix[1][1] 0.006519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 6PE A 1 501 2 6PE 6PE . M 13 CDL A 1 502 8 CDL CDL . N 14 HEM C 1 1001 1001 HEM HEM . O 14 HEM C 1 1002 1002 HEM HEM . P 15 PQU C 1 1003 1101 PQU PQU . Q 16 8PE C 1 1004 3 8PE 8PE . R 17 PEF C 1 1005 4 PEF PEF . S 13 CDL C 1 1006 6 CDL CDL . T 18 CL C 1 1007 9 CL CL . U 19 HEC D 1 1001 1001 HEC HEC . V 13 CDL D 1 1002 7 CDL CDL . W 20 FES E 1 1001 1001 FES FES . X 21 PX4 J 1 101 5 PX4 PX4 . Y 12 6PE K 1 101 1 6PE 6PE . Z 22 HOH C 1 1101 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . O 14 65.373 63.508 142.417 1 74.85 ? CHA HEM 1002 C 1 HETATM 2 C CHB HEM . . . O 14 65.989 66.328 146.311 1 75.11 ? CHB HEM 1002 C 1 HETATM 3 C CHC HEM . . . O 14 67.874 62.553 148.689 1 80.95 ? CHC HEM 1002 C 1 HETATM 4 C CHD HEM . . . O 14 67.51 59.815 144.712 1 81.82 ? CHD HEM 1002 C 1 HETATM 5 C C1A HEM . . . O 14 65.33 64.59 143.275 1 77.03 ? C1A HEM 1002 C 1 HETATM 6 C C2A HEM . . . O 14 64.758 65.883 142.988 1 72.55 ? C2A HEM 1002 C 1 HETATM 7 C C3A HEM . . . O 14 64.916 66.658 144.056 1 72.48 ? C3A HEM 1002 C 1 HETATM 8 C C4A HEM . . . O 14 65.62 65.896 145.062 1 76.97 ? C4A HEM 1002 C 1 HETATM 9 C CMA HEM . . . O 14 64.413 68.105 144.19 1 66.99 ? CMA HEM 1002 C 1 HETATM 10 C CAA HEM . . . O 14 64.002 66.246 141.696 1 72.33 ? CAA HEM 1002 C 1 HETATM 11 C CBA HEM . . . O 14 62.494 66.258 141.947 1 71.99 ? CBA HEM 1002 C 1 HETATM 12 C CGA HEM . . . O 14 61.951 64.906 142.347 1 71.19 ? CGA HEM 1002 C 1 HETATM 13 O O1A HEM . . . O 14 61.158 64.887 143.311 1 72.44 ? O1A HEM 1002 C 1 HETATM 14 O O2A HEM . . . O 14 62.249 63.856 141.718 1 71.85 ? O2A HEM 1002 C 1 HETATM 15 C C1B HEM . . . O 14 66.556 65.558 147.299 1 82.04 ? C1B HEM 1002 C 1 HETATM 16 C C2B HEM . . . O 14 66.892 66.001 148.641 1 81.07 ? C2B HEM 1002 C 1 HETATM 17 C C3B HEM . . . O 14 67.41 64.946 149.304 1 83.63 ? C3B HEM 1002 C 1 HETATM 18 C C4B HEM . . . O 14 67.413 63.818 148.39 1 84.92 ? C4B HEM 1002 C 1 HETATM 19 C CMB HEM . . . O 14 66.673 67.458 149.127 1 82.8 ? CMB HEM 1002 C 1 HETATM 20 C CAB HEM . . . O 14 67.964 64.847 150.753 1 89.81 ? CAB HEM 1002 C 1 HETATM 21 C CBB HEM . . . O 14 68.355 65.908 151.478 1 89.77 ? CBB HEM 1002 C 1 HETATM 22 C C1C HEM . . . O 14 67.911 61.469 147.836 1 84.03 ? C1C HEM 1002 C 1 HETATM 23 C C2C HEM . . . O 14 68.33 60.125 148.182 1 80.27 ? C2C HEM 1002 C 1 HETATM 24 C C3C HEM . . . O 14 68.221 59.357 147.088 1 79.57 ? C3C HEM 1002 C 1 HETATM 25 C C4C HEM . . . O 14 67.747 60.209 146.014 1 83.41 ? C4C HEM 1002 C 1 HETATM 26 C CMC HEM . . . O 14 68.726 59.725 149.616 1 82.84 ? CMC HEM 1002 C 1 HETATM 27 C CAC HEM . . . O 14 68.486 57.848 146.868 1 83.94 ? CAC HEM 1002 C 1 HETATM 28 C CBC HEM . . . O 14 69.233 57.054 147.643 1 84.57 ? CBC HEM 1002 C 1 HETATM 29 C C1D HEM . . . O 14 66.915 60.579 143.729 1 84.7 ? C1D HEM 1002 C 1 HETATM 30 C C2D HEM . . . O 14 66.623 60.159 142.367 1 80.73 ? C2D HEM 1002 C 1 HETATM 31 C C3D HEM . . . O 14 66.014 61.177 141.748 1 78.01 ? C3D HEM 1002 C 1 HETATM 32 C C4D HEM . . . O 14 65.92 62.276 142.677 1 79.96 ? C4D HEM 1002 C 1 HETATM 33 C CMD HEM . . . O 14 66.957 58.766 141.78 1 84.61 ? CMD HEM 1002 C 1 HETATM 34 C CAD HEM . . . O 14 65.522 61.216 140.295 1 80.17 ? CAD HEM 1002 C 1 HETATM 35 C CBD HEM . . . O 14 64.033 60.875 140.359 1 80.74 ? CBD HEM 1002 C 1 HETATM 36 C CGD HEM . . . O 14 63.38 60.889 138.999 1 80.05 ? CGD HEM 1002 C 1 HETATM 37 O O1D HEM . . . O 14 62.329 60.207 138.825 1 77.57 ? O1D HEM 1002 C 1 HETATM 38 O O2D HEM . . . O 14 63.939 61.547 138.084 1 81.62 ? O2D HEM 1002 C 1 HETATM 39 N NA HEM . . . O 14 65.863 64.648 144.543 1 72.67 ? NA HEM 1002 C 1 HETATM 40 N NB HEM . . . O 14 66.878 64.225 147.18 1 78.98 ? NB HEM 1002 C 1 HETATM 41 N NC HEM . . . O 14 67.572 61.489 146.499 1 77.95 ? NC HEM 1002 C 1 HETATM 42 N ND HEM . . . O 14 66.475 61.88 143.875 1 78.34 ? ND HEM 1002 C 1 HETATM 43 FE FE HEM . . . O 14 66.693 63.141 145.434 1 74.77 ? FE HEM 1002 C 1 HETATM 44 H HHB HEM . . . O 14 65.834 67.273 146.519 1 90.25 ? HHB HEM 1002 C 1 HETATM 45 H HHC HEM . . . O 14 68.209 62.41 149.599 1 97.27 ? HHC HEM 1002 C 1 HETATM 46 H HHD HEM . . . O 14 67.791 58.91 144.463 1 98.3 ? HHD HEM 1002 C 1 HETATM 47 H HMA HEM . . . O 14 64.767 68.5 145.014 1 79.78 ? HMA HEM 1002 C 1 HETATM 48 H HMAA HEM . . . O 14 63.434 68.11 144.219 1 79.78 ? HMAA HEM 1002 C 1 HETATM 49 H HMAB HEM . . . O 14 64.719 68.63 143.42 1 79.78 ? HMAB HEM 1002 C 1 HETATM 50 H HAA HEM . . . O 14 64.207 65.59 141.012 1 86.92 ? HAA HEM 1002 C 1 HETATM 51 H HAAA HEM . . . O 14 64.284 67.124 141.397 1 86.92 ? HAAA HEM 1002 C 1 HETATM 52 H HBA HEM . . . O 14 62.048 66.543 141.134 1 86.52 ? HBA HEM 1002 C 1 HETATM 53 H HBAA HEM . . . O 14 62.304 66.89 142.659 1 86.52 ? HBAA HEM 1002 C 1 HETATM 54 H HMB HEM . . . O 14 67.437 68.001 148.878 1 99.48 ? HMB HEM 1002 C 1 HETATM 55 H HMBA HEM . . . O 14 66.572 67.465 150.092 1 99.48 ? HMBA HEM 1002 C 1 HETATM 56 H HMBB HEM . . . O 14 65.872 67.819 148.717 1 99.48 ? HMBB HEM 1002 C 1 HETATM 57 H HAB HEM . . . O 14 68.03 63.977 151.153 1 107.89 ? HAB HEM 1002 C 1 HETATM 58 H HBB HEM . . . O 14 68.693 65.782 152.379 1 107.85 ? HBB HEM 1002 C 1 HETATM 59 H HBBA HEM . . . O 14 68.301 66.801 151.101 1 107.85 ? HBBA HEM 1002 C 1 HETATM 60 H HMC HEM . . . O 14 69.102 60.493 150.074 1 99.53 ? HMC HEM 1002 C 1 HETATM 61 H HMCA HEM . . . O 14 69.384 59.014 149.584 1 99.53 ? HMCA HEM 1002 C 1 HETATM 62 H HMCB HEM . . . O 14 67.941 59.417 150.095 1 99.53 ? HMCB HEM 1002 C 1 HETATM 63 H HAC HEM . . . O 14 68.074 57.443 146.102 1 100.85 ? HAC HEM 1002 C 1 HETATM 64 H HBC HEM . . . O 14 69.337 56.116 147.418 1 101.61 ? HBC HEM 1002 C 1 HETATM 65 H HBCA HEM . . . O 14 69.671 57.415 148.429 1 101.61 ? HBCA HEM 1002 C 1 HETATM 66 H HMD HEM . . . O 14 66.853 58.788 140.806 1 101.66 ? HMD HEM 1002 C 1 HETATM 67 H HMDA HEM . . . O 14 66.349 58.097 142.159 1 101.66 ? HMDA HEM 1002 C 1 HETATM 68 H HMDB HEM . . . O 14 67.881 58.53 142.004 1 101.66 ? HMDB HEM 1002 C 1 HETATM 69 H HAD HEM . . . O 14 65.996 60.561 139.758 1 96.33 ? HAD HEM 1002 C 1 HETATM 70 H HADA HEM . . . O 14 65.651 62.1 139.917 1 96.33 ? HADA HEM 1002 C 1 HETATM 71 H HBD HEM . . . O 14 63.588 61.526 140.925 1 97.01 ? HBD HEM 1002 C 1 HETATM 72 H HBDA HEM . . . O 14 63.932 59.99 140.744 1 97.01 ? HBDA HEM 1002 C 1 HETATM 73 H HHA HEM . . . O 14 64.971 63.633 141.532 1 89.94 ? HHA HEM 1002 C 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 73 #