data_7TAY # _model_server_result.job_id sZwK9SGD3ccLm9SElbbssQ _model_server_result.datetime_utc '2024-11-23 20:52:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":101}' # _entry.id 7TAY # _exptl.entry_id 7TAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.42 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TAY _cell.length_a 153.392 _cell.length_b 153.392 _cell.length_c 590.928 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 153.392 153.392 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 L N N ? 12 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 U CAB HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 U CAC HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 U FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 U FE HEC . D HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 W FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 W FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 W FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 W FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'C17 H33 N O8 P -1' _chem_comp.formula_weight 410.42 _chem_comp.id 6PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 6PE sing 1 n n O2 P1 6PE doub 2 n n P1 O3 6PE sing 3 n n P1 O8 6PE sing 4 n n O3 C1 6PE sing 5 n n C1 C2 6PE sing 6 n n C1 H1 6PE sing 7 n n C1 H2 6PE sing 8 n n C2 C3 6PE sing 9 n n C2 O6 6PE sing 10 n n C2 H3 6PE sing 11 n n C3 O4 6PE sing 12 n n C3 H4 6PE sing 13 n n C3 H5 6PE sing 14 n n O4 C4 6PE sing 15 n n C4 O5 6PE doub 16 n n C4 C5 6PE sing 17 n n C5 C6 6PE sing 18 n n C5 H6 6PE sing 19 n n C5 H7 6PE sing 20 n n C6 C7 6PE sing 21 n n C6 H8 6PE sing 22 n n C6 H9 6PE sing 23 n n C7 C8 6PE sing 24 n n C7 H10 6PE sing 25 n n C7 H11 6PE sing 26 n n C8 C9 6PE sing 27 n n C8 H12 6PE sing 28 n n C8 H13 6PE sing 29 n n C9 H14 6PE sing 30 n n C9 H15 6PE sing 31 n n C9 H16 6PE sing 32 n n O6 C10 6PE sing 33 n n C10 O7 6PE doub 34 n n C10 C11 6PE sing 35 n n C11 C12 6PE sing 36 n n C11 H17 6PE sing 37 n n C11 H18 6PE sing 38 n n C12 C13 6PE sing 39 n n C12 H19 6PE sing 40 n n C12 H20 6PE sing 41 n n C13 C14 6PE sing 42 n n C13 H21 6PE sing 43 n n C13 H22 6PE sing 44 n n C14 C15 6PE sing 45 n n C14 H23 6PE sing 46 n n C14 H24 6PE sing 47 n n C15 H25 6PE sing 48 n n C15 H26 6PE sing 49 n n C15 H27 6PE sing 50 n n O8 C16 6PE sing 51 n n C16 C17 6PE sing 52 n n C16 H28 6PE sing 53 n n C16 H29 6PE sing 54 n n C17 N1 6PE sing 55 n n C17 H30 6PE sing 56 n n C17 H31 6PE sing 57 n n N1 H32 6PE sing 58 n n N1 H33 6PE sing 59 n n # _atom_sites.entry_id 7TAY _atom_sites.fract_transf_matrix[1][1] 0.006519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 6PE A 1 501 2 6PE 6PE . M 13 CDL A 1 502 8 CDL CDL . N 14 HEM C 1 1001 1001 HEM HEM . O 14 HEM C 1 1002 1002 HEM HEM . P 15 PQU C 1 1003 1101 PQU PQU . Q 16 8PE C 1 1004 3 8PE 8PE . R 17 PEF C 1 1005 4 PEF PEF . S 13 CDL C 1 1006 6 CDL CDL . T 18 CL C 1 1007 9 CL CL . U 19 HEC D 1 1001 1001 HEC HEC . V 13 CDL D 1 1002 7 CDL CDL . W 20 FES E 1 1001 1001 FES FES . X 21 PX4 J 1 101 5 PX4 PX4 . Y 12 6PE K 1 101 1 6PE 6PE . Z 22 HOH C 1 1101 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 6PE . . . Y 12 53.706 100.702 168.933 1 127.94 ? O1 6PE 101 K 1 HETATM 2 O O2 6PE . . . Y 12 52.236 102.092 167.322 1 124.68 ? O2 6PE 101 K 1 HETATM 3 P P1 6PE . . . Y 12 53.553 101.397 167.599 1 127.29 ? P1 6PE 101 K 1 HETATM 4 O O3 6PE . . . Y 12 53.783 100.277 166.351 1 130.73 ? O3 6PE 101 K 1 HETATM 5 C C1 6PE . . . Y 12 54.809 99.313 166.621 1 132.1 ? C1 6PE 101 K 1 HETATM 6 C C2 6PE . . . Y 12 56.008 99.546 165.717 1 133.94 ? C2 6PE 101 K 1 HETATM 7 C C3 6PE . . . Y 12 57.077 98.441 165.973 1 135.34 ? C3 6PE 101 K 1 HETATM 8 O O4 6PE . . . Y 12 57.844 98.243 164.759 1 137.58 ? O4 6PE 101 K 1 HETATM 9 C C4 6PE . . . Y 12 59.15 97.905 164.929 1 138.52 ? C4 6PE 101 K 1 HETATM 10 O O5 6PE . . . Y 12 59.52 97.173 165.81 1 139.15 ? O5 6PE 101 K 1 HETATM 11 C C5 6PE . . . Y 12 60.117 98.555 163.921 1 138.26 ? C5 6PE 101 K 1 HETATM 12 C C6 6PE . . . Y 12 60.429 97.567 162.766 1 138.18 ? C6 6PE 101 K 1 HETATM 13 C C7 6PE . . . Y 12 60.822 98.351 161.489 1 138.24 ? C7 6PE 101 K 1 HETATM 14 C C8 6PE . . . Y 12 61.927 97.628 160.7 1 137.7 ? C8 6PE 101 K 1 HETATM 15 C C9 6PE . . . Y 12 62.332 98.468 159.489 1 137.15 ? C9 6PE 101 K 1 HETATM 16 O O6 6PE . . . Y 12 55.62 99.523 164.315 1 135.27 ? O6 6PE 101 K 1 HETATM 17 C C10 6PE . . . Y 12 56.141 100.51 163.519 1 135.86 ? C10 6PE 101 K 1 HETATM 18 O O7 6PE . . . Y 12 56.222 101.664 163.859 1 136.4 ? O7 6PE 101 K 1 HETATM 19 C C11 6PE . . . Y 12 56.624 100.052 162.131 1 135.51 ? C11 6PE 101 K 1 HETATM 20 C C12 6PE . . . Y 12 57.393 101.22 161.454 1 135.05 ? C12 6PE 101 K 1 HETATM 21 C C13 6PE . . . Y 12 57.931 100.775 160.079 1 134.72 ? C13 6PE 101 K 1 HETATM 22 C C14 6PE . . . Y 12 58.867 101.838 159.493 1 133.8 ? C14 6PE 101 K 1 HETATM 23 C C15 6PE . . . Y 12 59.726 101.221 158.391 1 133.25 ? C15 6PE 101 K 1 HETATM 24 O O8 6PE . . . Y 12 54.752 102.548 167.402 1 124.51 ? O8 6PE 101 K 1 HETATM 25 C C16 6PE . . . Y 12 55.717 102.365 168.405 1 120.91 ? C16 6PE 101 K 1 HETATM 26 C C17 6PE . . . Y 12 56.868 103.301 168.147 1 118.17 ? C17 6PE 101 K 1 HETATM 27 N N1 6PE . . . Y 12 58.068 102.761 168.784 1 116.94 ? N1 6PE 101 K 1 HETATM 28 H H1 6PE . . . Y 12 54.441 98.425 166.492 1 158.64 ? H1 6PE 101 K 1 HETATM 29 H H2 6PE . . . Y 12 55.058 99.38 167.556 1 158.64 ? H2 6PE 101 K 1 HETATM 30 H H3 6PE . . . Y 12 56.392 100.403 165.958 1 160.85 ? H3 6PE 101 K 1 HETATM 31 H H4 6PE . . . Y 12 56.62 97.63 166.246 1 162.53 ? H4 6PE 101 K 1 HETATM 32 H H5 6PE . . . Y 12 57.64 98.724 166.711 1 162.53 ? H5 6PE 101 K 1 HETATM 33 H H6 6PE . . . Y 12 60.949 98.796 164.358 1 166.03 ? H6 6PE 101 K 1 HETATM 34 H H7 6PE . . . Y 12 59.723 99.358 163.546 1 166.03 ? H7 6PE 101 K 1 HETATM 35 H H8 6PE . . . Y 12 59.654 97.013 162.585 1 165.94 ? H8 6PE 101 K 1 HETATM 36 H H9 6PE . . . Y 12 61.153 96.975 163.023 1 165.94 ? H9 6PE 101 K 1 HETATM 37 H H10 6PE . . . Y 12 61.133 99.237 161.733 1 166.01 ? H10 6PE 101 K 1 HETATM 38 H H11 6PE . . . Y 12 60.044 98.459 160.92 1 166.01 ? H11 6PE 101 K 1 HETATM 39 H H12 6PE . . . Y 12 61.614 96.759 160.402 1 165.36 ? H12 6PE 101 K 1 HETATM 40 H H13 6PE . . . Y 12 62.701 97.478 161.265 1 165.36 ? H13 6PE 101 K 1 HETATM 41 H H14 6PE . . . Y 12 63.083 98.071 159.021 1 164.7 ? H14 6PE 101 K 1 HETATM 42 H H15 6PE . . . Y 12 62.592 99.364 159.755 1 164.7 ? H15 6PE 101 K 1 HETATM 43 H H16 6PE . . . Y 12 61.601 98.549 158.857 1 164.7 ? H16 6PE 101 K 1 HETATM 44 H H17 6PE . . . Y 12 55.87 99.804 161.573 1 162.74 ? H17 6PE 101 K 1 HETATM 45 H H18 6PE . . . Y 12 57.216 99.288 162.212 1 162.74 ? H18 6PE 101 K 1 HETATM 46 H H19 6PE . . . Y 12 58.129 101.504 162.018 1 162.18 ? H19 6PE 101 K 1 HETATM 47 H H20 6PE . . . Y 12 56.806 101.984 161.344 1 162.18 ? H20 6PE 101 K 1 HETATM 48 H H21 6PE . . . Y 12 57.189 100.624 159.473 1 161.78 ? H21 6PE 101 K 1 HETATM 49 H H22 6PE . . . Y 12 58.409 99.936 160.174 1 161.78 ? H22 6PE 101 K 1 HETATM 50 H H23 6PE . . . Y 12 59.436 102.199 160.19 1 160.69 ? H23 6PE 101 K 1 HETATM 51 H H24 6PE . . . Y 12 58.348 102.574 159.133 1 160.69 ? H24 6PE 101 K 1 HETATM 52 H H25 6PE . . . Y 12 60.332 101.876 158.01 1 160.02 ? H25 6PE 101 K 1 HETATM 53 H H26 6PE . . . Y 12 59.177 100.874 157.67 1 160.02 ? H26 6PE 101 K 1 HETATM 54 H H27 6PE . . . Y 12 60.261 100.488 158.732 1 160.02 ? H27 6PE 101 K 1 HETATM 55 H H28 6PE . . . Y 12 56.011 101.441 168.405 1 145.22 ? H28 6PE 101 K 1 HETATM 56 H H29 6PE . . . Y 12 55.316 102.534 169.272 1 145.22 ? H29 6PE 101 K 1 HETATM 57 H H30 6PE . . . Y 12 56.651 104.176 168.506 1 141.93 ? H30 6PE 101 K 1 HETATM 58 H H31 6PE . . . Y 12 56.995 103.389 167.189 1 141.93 ? H31 6PE 101 K 1 HETATM 59 H H32 6PE . . . Y 12 58.213 101.959 168.427 1 140.45 ? H32 6PE 101 K 1 HETATM 60 H H33 6PE . . . Y 12 58.748 103.289 168.561 1 140.45 ? H33 6PE 101 K 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 60 #