data_7TBB # _model_server_result.job_id ownL6mhdS2OxFYBFKmeYkw _model_server_result.datetime_utc '2024-10-19 08:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7TBB # _exptl.entry_id 7TBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TBB _cell.length_a 62.308 _cell.length_b 63.152 _cell.length_c 79.337 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 279 1_555 A SG CYS 73 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 236 A CYS 447 1_555 A SG CYS 237 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 271 A CYS 482 1_555 A SG CYS 310 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 123 A ASN 334 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 256 n n C1 O1 NAG sing 257 n n C1 O5 NAG sing 258 n n C1 H1 NAG sing 259 n n C2 C3 NAG sing 260 n n C2 N2 NAG sing 261 n n C2 H2 NAG sing 262 n n C3 C4 NAG sing 263 n n C3 O3 NAG sing 264 n n C3 H3 NAG sing 265 n n C4 C5 NAG sing 266 n n C4 O4 NAG sing 267 n n C4 H4 NAG sing 268 n n C5 C6 NAG sing 269 n n C5 O5 NAG sing 270 n n C5 H5 NAG sing 271 n n C6 O6 NAG sing 272 n n C6 H61 NAG sing 273 n n C6 H62 NAG sing 274 n n C7 C8 NAG sing 275 n n C7 N2 NAG sing 276 n n C7 O7 NAG doub 277 n n C8 H81 NAG sing 278 n n C8 H82 NAG sing 279 n n C8 H83 NAG sing 280 n n N2 HN2 NAG sing 281 n n O1 HO1 NAG sing 282 n n O3 HO3 NAG sing 283 n n O4 HO4 NAG sing 284 n n O6 HO6 NAG sing 285 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7TBB _atom_sites.fract_transf_matrix[1][1] 0.016049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012604 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 572 NAG NAG . C 3 ACT A 1 602 702 ACT ACT . D 4 GOL A 1 603 802 GOL GOL . E 3 ACT A 1 604 902 ACT ACT . F 3 ACT A 1 605 1002 ACT ACT . G 3 ACT A 1 606 1102 ACT ACT . H 3 ACT A 1 607 1202 ACT ACT . I 3 ACT A 1 608 1302 ACT ACT . J 3 ACT A 1 609 1402 ACT ACT . K 3 ACT A 1 610 1502 ACT ACT . L 5 HOH A 1 701 575 HOH HOH . L 5 HOH A 2 702 418 HOH HOH . L 5 HOH A 3 703 103 HOH HOH . L 5 HOH A 4 704 54 HOH HOH . L 5 HOH A 5 705 233 HOH HOH . L 5 HOH A 6 706 29 HOH HOH . L 5 HOH A 7 707 107 HOH HOH . L 5 HOH A 8 708 556 HOH HOH . L 5 HOH A 9 709 124 HOH HOH . L 5 HOH A 10 710 48 HOH HOH . L 5 HOH A 11 711 49 HOH HOH . L 5 HOH A 12 712 217 HOH HOH . L 5 HOH A 13 713 447 HOH HOH . L 5 HOH A 14 714 126 HOH HOH . L 5 HOH A 15 715 22 HOH HOH . L 5 HOH A 16 716 230 HOH HOH . L 5 HOH A 17 717 19 HOH HOH . L 5 HOH A 18 718 43 HOH HOH . L 5 HOH A 19 719 268 HOH HOH . L 5 HOH A 20 720 70 HOH HOH . L 5 HOH A 21 721 17 HOH HOH . L 5 HOH A 22 722 7 HOH HOH . L 5 HOH A 23 723 33 HOH HOH . L 5 HOH A 24 724 25 HOH HOH . L 5 HOH A 25 725 24 HOH HOH . L 5 HOH A 26 726 46 HOH HOH . L 5 HOH A 27 727 18 HOH HOH . L 5 HOH A 28 728 50 HOH HOH . L 5 HOH A 29 729 10 HOH HOH . L 5 HOH A 30 730 11 HOH HOH . L 5 HOH A 31 731 52 HOH HOH . L 5 HOH A 32 732 216 HOH HOH . L 5 HOH A 33 733 16 HOH HOH . L 5 HOH A 34 734 2 HOH HOH . L 5 HOH A 35 735 72 HOH HOH . L 5 HOH A 36 736 62 HOH HOH . L 5 HOH A 37 737 425 HOH HOH . L 5 HOH A 38 738 164 HOH HOH . L 5 HOH A 39 739 20 HOH HOH . L 5 HOH A 40 740 9 HOH HOH . L 5 HOH A 41 741 59 HOH HOH . L 5 HOH A 42 742 555 HOH HOH . L 5 HOH A 43 743 569 HOH HOH . L 5 HOH A 44 744 160 HOH HOH . L 5 HOH A 45 745 35 HOH HOH . L 5 HOH A 46 746 3 HOH HOH . L 5 HOH A 47 747 13 HOH HOH . L 5 HOH A 48 748 36 HOH HOH . L 5 HOH A 49 749 482 HOH HOH . L 5 HOH A 50 750 31 HOH HOH . L 5 HOH A 51 751 95 HOH HOH . L 5 HOH A 52 752 38 HOH HOH . L 5 HOH A 53 753 37 HOH HOH . L 5 HOH A 54 754 5 HOH HOH . L 5 HOH A 55 755 112 HOH HOH . L 5 HOH A 56 756 83 HOH HOH . L 5 HOH A 57 757 577 HOH HOH . L 5 HOH A 58 758 42 HOH HOH . L 5 HOH A 59 759 80 HOH HOH . L 5 HOH A 60 760 281 HOH HOH . L 5 HOH A 61 761 89 HOH HOH . L 5 HOH A 62 762 566 HOH HOH . L 5 HOH A 63 763 27 HOH HOH . L 5 HOH A 64 764 8 HOH HOH . L 5 HOH A 65 765 101 HOH HOH . L 5 HOH A 66 766 97 HOH HOH . L 5 HOH A 67 767 542 HOH HOH . L 5 HOH A 68 768 223 HOH HOH . L 5 HOH A 69 769 32 HOH HOH . L 5 HOH A 70 770 14 HOH HOH . L 5 HOH A 71 771 40 HOH HOH . L 5 HOH A 72 772 12 HOH HOH . L 5 HOH A 73 773 247 HOH HOH . L 5 HOH A 74 774 265 HOH HOH . L 5 HOH A 75 775 573 HOH HOH . L 5 HOH A 76 776 30 HOH HOH . L 5 HOH A 77 777 405 HOH HOH . L 5 HOH A 78 778 229 HOH HOH . L 5 HOH A 79 779 428 HOH HOH . L 5 HOH A 80 780 215 HOH HOH . L 5 HOH A 81 781 81 HOH HOH . L 5 HOH A 82 782 23 HOH HOH . L 5 HOH A 83 783 15 HOH HOH . L 5 HOH A 84 784 117 HOH HOH . L 5 HOH A 85 785 76 HOH HOH . L 5 HOH A 86 786 94 HOH HOH . L 5 HOH A 87 787 114 HOH HOH . L 5 HOH A 88 788 282 HOH HOH . L 5 HOH A 89 789 41 HOH HOH . L 5 HOH A 90 790 283 HOH HOH . L 5 HOH A 91 791 232 HOH HOH . L 5 HOH A 92 792 292 HOH HOH . L 5 HOH A 93 793 156 HOH HOH . L 5 HOH A 94 794 110 HOH HOH . L 5 HOH A 95 795 414 HOH HOH . L 5 HOH A 96 796 44 HOH HOH . L 5 HOH A 97 797 34 HOH HOH . L 5 HOH A 98 798 100 HOH HOH . L 5 HOH A 99 799 548 HOH HOH . L 5 HOH A 100 800 4 HOH HOH . L 5 HOH A 101 801 153 HOH HOH . L 5 HOH A 102 802 65 HOH HOH . L 5 HOH A 103 803 421 HOH HOH . L 5 HOH A 104 804 184 HOH HOH . L 5 HOH A 105 805 224 HOH HOH . L 5 HOH A 106 806 47 HOH HOH . L 5 HOH A 107 807 537 HOH HOH . L 5 HOH A 108 808 572 HOH HOH . L 5 HOH A 109 809 21 HOH HOH . L 5 HOH A 110 810 78 HOH HOH . L 5 HOH A 111 811 256 HOH HOH . L 5 HOH A 112 812 53 HOH HOH . L 5 HOH A 113 813 403 HOH HOH . L 5 HOH A 114 814 45 HOH HOH . L 5 HOH A 115 815 106 HOH HOH . L 5 HOH A 116 816 565 HOH HOH . L 5 HOH A 117 817 61 HOH HOH . L 5 HOH A 118 818 236 HOH HOH . L 5 HOH A 119 819 55 HOH HOH . L 5 HOH A 120 820 122 HOH HOH . L 5 HOH A 121 821 563 HOH HOH . L 5 HOH A 122 822 280 HOH HOH . L 5 HOH A 123 823 154 HOH HOH . L 5 HOH A 124 824 145 HOH HOH . L 5 HOH A 125 825 222 HOH HOH . L 5 HOH A 126 826 74 HOH HOH . L 5 HOH A 127 827 51 HOH HOH . L 5 HOH A 128 828 209 HOH HOH . L 5 HOH A 129 829 69 HOH HOH . L 5 HOH A 130 830 98 HOH HOH . L 5 HOH A 131 831 90 HOH HOH . L 5 HOH A 132 832 419 HOH HOH . L 5 HOH A 133 833 202 HOH HOH . L 5 HOH A 134 834 163 HOH HOH . L 5 HOH A 135 835 123 HOH HOH . L 5 HOH A 136 836 237 HOH HOH . L 5 HOH A 137 837 139 HOH HOH . L 5 HOH A 138 838 169 HOH HOH . L 5 HOH A 139 839 561 HOH HOH . L 5 HOH A 140 840 568 HOH HOH . L 5 HOH A 141 841 26 HOH HOH . L 5 HOH A 142 842 540 HOH HOH . L 5 HOH A 143 843 578 HOH HOH . L 5 HOH A 144 844 87 HOH HOH . L 5 HOH A 145 845 567 HOH HOH . L 5 HOH A 146 846 564 HOH HOH . L 5 HOH A 147 847 77 HOH HOH . L 5 HOH A 148 848 179 HOH HOH . L 5 HOH A 149 849 67 HOH HOH . L 5 HOH A 150 850 6 HOH HOH . L 5 HOH A 151 851 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 38.73 35.255 31.755 1 57.01 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . B 2 38.651 36.316 32.856 1 57.31 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . B 2 40.031 36.903 33.142 1 61.25 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . B 2 41.027 35.794 33.449 1 62.04 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . B 2 41.052 34.808 32.29 1 60.97 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . B 2 41.966 33.63 32.533 1 60.89 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . B 2 36.504 37.491 33.058 1 50.34 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . B 2 35.68 38.654 32.593 1 49.51 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . B 2 37.714 37.371 32.502 1 56.42 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . B 2 39.939 37.797 34.245 1 64.43 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . B 2 42.328 36.338 33.647 1 68.46 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . B 2 39.733 34.277 32.091 1 60.17 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . B 2 41.271 32.55 33.141 1 62.45 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . B 2 36.093 36.695 33.895 1 52.69 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #