data_7TBW # _model_server_result.job_id r7VkeSkaj7HEV0epTKw51A _model_server_result.datetime_utc '2024-11-22 21:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2503}' # _entry.id 7TBW # _exptl.entry_id 7TBW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TBW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2503 NAG 2 n B NAG 2 B 2 NAG B 2504 NAG 3 n C NAG 1 C 1 NAG B 2505 NAG 3 n C NAG 2 C 2 NAG B 2506 NAG 3 n C BMA 3 C 3 BMA B 2507 BMA 3 n C BMA 4 C 4 BMA B 2508 BMA 3 n C BMA 5 C 5 BMA B 2509 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 309 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 355 A CYS 355 1_555 A SG CYS 504 A CYS 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 626 A CYS 626 1_555 A SG CYS 1465 A CYS 1465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 1418 A CYS 1418 1_555 A SG CYS 1429 A CYS 1429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 1463 A CYS 1463 1_555 A SG CYS 1477 A CYS 1477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 98 A ASN 98 1_555 I C1 NAG . A NAG 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 400 A ASN 400 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 1504 A ASN 1504 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 1637 A ASN 1637 1_555 J C1 NAG . A NAG 2507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OG1 THR 940 A THR 940 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc2 A OE1 GLN 980 A GLN 980 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc3 A OD1 ASP 1057 A ASP 1057 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc4 A OG SER 1953 A SER 1953 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 A OE1 GLN 1993 A GLN 1993 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 E O3G ATP . A ATP 2502 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc7 E O1B ATP . A ATP 2502 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc8 F O2G ATP . A ATP 2503 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc9 F O1B ATP . A ATP 2503 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc10 F O2B ATP . A ATP 2503 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7TBW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CLR A 1 2501 2501 CLR CLR . E 5 ATP A 1 2502 2301 ATP ATP . F 5 ATP A 1 2503 2302 ATP ATP . G 6 MG A 1 2504 2303 MG MG . H 6 MG A 1 2505 2304 MG MG . I 7 NAG A 1 2506 2501 NAG NAG . J 7 NAG A 1 2507 2502 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 5 145.306 141.15 187.074 1 66.93 ? PG ATP 2503 A 1 HETATM 2 O O1G ATP . . . F 5 146.301 140.924 188.187 1 66.93 ? O1G ATP 2503 A 1 HETATM 3 O O2G ATP . . . F 5 145.425 140.168 185.933 1 66.93 ? O2G ATP 2503 A 1 HETATM 4 O O3G ATP . . . F 5 143.889 141.398 187.532 1 66.93 ? O3G ATP 2503 A 1 HETATM 5 P PB ATP . . . F 5 146.876 142.598 185.271 1 66.93 ? PB ATP 2503 A 1 HETATM 6 O O1B ATP . . . F 5 146.228 142.126 183.991 1 66.93 ? O1B ATP 2503 A 1 HETATM 7 O O2B ATP . . . F 5 148.109 141.897 185.79 1 66.93 ? O2B ATP 2503 A 1 HETATM 8 O O3B ATP . . . F 5 145.758 142.554 186.428 1 66.93 ? O3B ATP 2503 A 1 HETATM 9 P PA ATP . . . F 5 147.931 144.816 183.87 1 66.93 ? PA ATP 2503 A 1 HETATM 10 O O1A ATP . . . F 5 149.403 144.94 184.178 1 66.93 ? O1A ATP 2503 A 1 HETATM 11 O O2A ATP . . . F 5 147.505 144.069 182.63 1 66.93 ? O2A ATP 2503 A 1 HETATM 12 O O3A ATP . . . F 5 147.21 144.171 185.161 1 66.93 ? O3A ATP 2503 A 1 HETATM 13 O O5' ATP . . . F 5 147.308 146.3 183.815 1 66.93 ? O5' ATP 2503 A 1 HETATM 14 C C5' ATP . . . F 5 145.899 146.506 183.882 1 66.93 ? C5' ATP 2503 A 1 HETATM 15 C C4' ATP . . . F 5 145.585 147.94 183.475 1 66.93 ? C4' ATP 2503 A 1 HETATM 16 O O4' ATP . . . F 5 146.276 148.257 182.265 1 66.93 ? O4' ATP 2503 A 1 HETATM 17 C C3' ATP . . . F 5 144.099 148.137 183.223 1 66.93 ? C3' ATP 2503 A 1 HETATM 18 O O3' ATP . . . F 5 143.553 149.039 184.19 1 66.93 ? O3' ATP 2503 A 1 HETATM 19 C C2' ATP . . . F 5 143.987 148.732 181.834 1 66.93 ? C2' ATP 2503 A 1 HETATM 20 O O2' ATP . . . F 5 143.336 150.005 181.897 1 66.93 ? O2' ATP 2503 A 1 HETATM 21 C C1' ATP . . . F 5 145.41 148.9 181.327 1 66.93 ? C1' ATP 2503 A 1 HETATM 22 N N9 ATP . . . F 5 145.55 148.238 180.007 1 66.93 ? N9 ATP 2503 A 1 HETATM 23 C C8 ATP . . . F 5 146.1 147.028 179.796 1 66.93 ? C8 ATP 2503 A 1 HETATM 24 N N7 ATP . . . F 5 146.082 146.703 178.478 1 66.93 ? N7 ATP 2503 A 1 HETATM 25 C C5 ATP . . . F 5 145.507 147.725 177.819 1 66.93 ? C5 ATP 2503 A 1 HETATM 26 C C6 ATP . . . F 5 145.174 148.032 176.408 1 66.93 ? C6 ATP 2503 A 1 HETATM 27 N N6 ATP . . . F 5 145.461 147.156 175.415 1 66.93 ? N6 ATP 2503 A 1 HETATM 28 N N1 ATP . . . F 5 144.575 149.215 176.146 1 66.93 ? N1 ATP 2503 A 1 HETATM 29 C C2 ATP . . . F 5 144.286 150.093 177.124 1 66.93 ? C2 ATP 2503 A 1 HETATM 30 N N3 ATP . . . F 5 144.559 149.881 178.425 1 66.93 ? N3 ATP 2503 A 1 HETATM 31 C C4 ATP . . . F 5 145.16 148.736 178.83 1 66.93 ? C4 ATP 2503 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #