data_7TBW # _model_server_result.job_id 1VJ3DmU3ICqHBIYhJFhPkg _model_server_result.datetime_utc '2024-11-04 18:54:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2507}' # _entry.id 7TBW # _exptl.entry_id 7TBW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TBW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2503 NAG 2 n B NAG 2 B 2 NAG B 2504 NAG 3 n C NAG 1 C 1 NAG B 2505 NAG 3 n C NAG 2 C 2 NAG B 2506 NAG 3 n C BMA 3 C 3 BMA B 2507 BMA 3 n C BMA 4 C 4 BMA B 2508 BMA 3 n C BMA 5 C 5 BMA B 2509 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 309 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 355 A CYS 355 1_555 A SG CYS 504 A CYS 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 626 A CYS 626 1_555 A SG CYS 1465 A CYS 1465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 1418 A CYS 1418 1_555 A SG CYS 1429 A CYS 1429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 1463 A CYS 1463 1_555 A SG CYS 1477 A CYS 1477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 98 A ASN 98 1_555 I C1 NAG . A NAG 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 400 A ASN 400 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 1504 A ASN 1504 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 1637 A ASN 1637 1_555 J C1 NAG . A NAG 2507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OG1 THR 940 A THR 940 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc2 A OE1 GLN 980 A GLN 980 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc3 A OD1 ASP 1057 A ASP 1057 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc4 A OG SER 1953 A SER 1953 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 A OE1 GLN 1993 A GLN 1993 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 E O3G ATP . A ATP 2502 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc7 E O1B ATP . A ATP 2502 1_555 H MG MG . A MG 2505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc8 F O2G ATP . A ATP 2503 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc9 F O1B ATP . A ATP 2503 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc10 F O2B ATP . A ATP 2503 1_555 G MG MG . A MG 2504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7TBW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CLR A 1 2501 2501 CLR CLR . E 5 ATP A 1 2502 2301 ATP ATP . F 5 ATP A 1 2503 2302 ATP ATP . G 6 MG A 1 2504 2303 MG MG . H 6 MG A 1 2505 2304 MG MG . I 7 NAG A 1 2506 2501 NAG NAG . J 7 NAG A 1 2507 2502 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 7 127.586 116.56 107.685 1 94.71 ? C1 NAG 2507 A 1 HETATM 2 C C2 NAG . . . J 7 128.307 115.442 108.437 1 94.71 ? C2 NAG 2507 A 1 HETATM 3 C C3 NAG . . . J 7 128.421 114.202 107.555 1 94.71 ? C3 NAG 2507 A 1 HETATM 4 C C4 NAG . . . J 7 127.051 113.798 107.026 1 94.71 ? C4 NAG 2507 A 1 HETATM 5 C C5 NAG . . . J 7 126.375 114.984 106.342 1 94.71 ? C5 NAG 2507 A 1 HETATM 6 C C6 NAG . . . J 7 124.961 114.687 105.901 1 94.71 ? C6 NAG 2507 A 1 HETATM 7 C C7 NAG . . . J 7 130.069 115.692 110.128 1 94.71 ? C7 NAG 2507 A 1 HETATM 8 C C8 NAG . . . J 7 131.449 116.202 110.413 1 94.71 ? C8 NAG 2507 A 1 HETATM 9 N N2 NAG . . . J 7 129.622 115.875 108.881 1 94.71 ? N2 NAG 2507 A 1 HETATM 10 O O3 NAG . . . J 7 128.987 113.135 108.307 1 94.71 ? O3 NAG 2507 A 1 HETATM 11 O O4 NAG . . . J 7 127.185 112.733 106.092 1 94.71 ? O4 NAG 2507 A 1 HETATM 12 O O5 NAG . . . J 7 126.303 116.096 107.247 1 94.71 ? O5 NAG 2507 A 1 HETATM 13 O O6 NAG . . . J 7 124.935 114.052 104.63 1 94.71 ? O6 NAG 2507 A 1 HETATM 14 O O7 NAG . . . J 7 129.389 115.139 110.987 1 94.71 ? O7 NAG 2507 A 1 # _model_server_stats.io_time_ms 109 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #