data_7TCG # _model_server_result.job_id rFM97rBvLlot5QqM6zfvqA _model_server_result.datetime_utc '2024-12-05 06:09:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 7TCG # _exptl.entry_id 7TCG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 842.178 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-4-deoxy-1-O-[(S)-hydroxy{[(2E,6E,10Z,14Z,18Z,22E,26E,30E)-3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18,22,26,30,34-nonaen-1-yl]oxy}phosphoryl]-alpha-L-arabinopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TCG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C50 H84 N O7 P' _chem_comp.formula_weight 842.178 _chem_comp.id I0O _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-4-deoxy-1-O-[(S)-hydroxy{[(2E,6E,10Z,14Z,18Z,22E,26E,30E)-3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18,22,26,30,34-nonaen-1-yl]oxy}phosphoryl]-alpha-L-arabinopyranose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N16 C9 I0O sing 150 n n C9 C8 I0O sing 151 n n C9 C10 I0O sing 152 n n C8 O15 I0O sing 153 n n C8 C7 I0O sing 154 n n C10 O11 I0O sing 155 n n O14 C7 I0O sing 156 n n C7 C6 I0O sing 157 n n O11 C6 I0O sing 158 n n C6 O5 I0O sing 159 n n O4 P2 I0O doub 160 n n O5 P2 I0O sing 161 n n P2 O1 I0O sing 162 n n P2 O3 I0O sing 163 n n O1 C1 I0O sing 164 n n C1 C2 I0O sing 165 n n C2 C3 I0O doub 166 e n C13 C3 I0O sing 167 n n C3 C4 I0O sing 168 n n C4 C5 I0O sing 169 n n C5 C11 I0O sing 170 n n C11 C12 I0O doub 171 e n C14 C12 I0O sing 172 n n C12 C15 I0O sing 173 n n C15 C16 I0O sing 174 n n C16 C17 I0O sing 175 n n C17 C18 I0O doub 176 z n C18 C19 I0O sing 177 n n C18 C20 I0O sing 178 n n C20 C21 I0O sing 179 n n C21 C22 I0O sing 180 n n C22 C23 I0O doub 181 z n C44 C43 I0O sing 182 n n C23 C24 I0O sing 183 n n C23 C25 I0O sing 184 n n C50 C48 I0O sing 185 n n C25 C26 I0O sing 186 n n C41 C40 I0O sing 187 n n C41 C42 I0O sing 188 n n C43 C42 I0O doub 189 e n C43 C45 I0O sing 190 n n C40 C38 I0O sing 191 n n C48 C47 I0O doub 192 n n C48 C49 I0O sing 193 n n C47 C46 I0O sing 194 n n C26 C27 I0O sing 195 n n C45 C46 I0O sing 196 n n C39 C38 I0O sing 197 n n C38 C37 I0O doub 198 e n C27 C28 I0O doub 199 z n C37 C36 I0O sing 200 n n C28 C30 I0O sing 201 n n C28 C29 I0O sing 202 n n C30 C31 I0O sing 203 n n C36 C35 I0O sing 204 n n C31 C32 I0O sing 205 n n C32 C33 I0O doub 206 e n C35 C33 I0O sing 207 n n C33 C34 I0O sing 208 n n C1 H1 I0O sing 209 n n C1 H2 I0O sing 210 n n C2 H3 I0O sing 211 n n C4 H4 I0O sing 212 n n C4 H5 I0O sing 213 n n C5 H6 I0O sing 214 n n C5 H7 I0O sing 215 n n C6 H8 I0O sing 216 n n C7 H9 I0O sing 217 n n C9 H10 I0O sing 218 n n C15 H11 I0O sing 219 n n C15 H12 I0O sing 220 n n C16 H13 I0O sing 221 n n C16 H14 I0O sing 222 n n C17 H15 I0O sing 223 n n C19 H16 I0O sing 224 n n C19 H17 I0O sing 225 n n C19 H18 I0O sing 226 n n C24 H19 I0O sing 227 n n C24 H20 I0O sing 228 n n C24 H21 I0O sing 229 n n C25 H22 I0O sing 230 n n C25 H23 I0O sing 231 n n C26 H24 I0O sing 232 n n C26 H25 I0O sing 233 n n C27 H26 I0O sing 234 n n C29 H27 I0O sing 235 n n C29 H28 I0O sing 236 n n C29 H29 I0O sing 237 n n C36 H30 I0O sing 238 n n C36 H31 I0O sing 239 n n C37 H32 I0O sing 240 n n C39 H33 I0O sing 241 n n C39 H34 I0O sing 242 n n C39 H35 I0O sing 243 n n C40 H36 I0O sing 244 n n C40 H37 I0O sing 245 n n C10 H38 I0O sing 246 n n C10 H39 I0O sing 247 n n C11 H40 I0O sing 248 n n C13 H41 I0O sing 249 n n C13 H42 I0O sing 250 n n C13 H43 I0O sing 251 n n C14 H44 I0O sing 252 n n C14 H45 I0O sing 253 n n C14 H46 I0O sing 254 n n C20 H47 I0O sing 255 n n C20 H48 I0O sing 256 n n C21 H49 I0O sing 257 n n C21 H50 I0O sing 258 n n C22 H51 I0O sing 259 n n C30 H52 I0O sing 260 n n C30 H53 I0O sing 261 n n C31 H54 I0O sing 262 n n C31 H55 I0O sing 263 n n C32 H56 I0O sing 264 n n C34 H57 I0O sing 265 n n C34 H58 I0O sing 266 n n C34 H59 I0O sing 267 n n C35 H60 I0O sing 268 n n C35 H61 I0O sing 269 n n C41 H62 I0O sing 270 n n C41 H63 I0O sing 271 n n C42 H64 I0O sing 272 n n C44 H65 I0O sing 273 n n C44 H66 I0O sing 274 n n C44 H67 I0O sing 275 n n C45 H68 I0O sing 276 n n C45 H69 I0O sing 277 n n C46 H70 I0O sing 278 n n C46 H71 I0O sing 279 n n C47 H72 I0O sing 280 n n C49 H73 I0O sing 281 n n C49 H74 I0O sing 282 n n C49 H75 I0O sing 283 n n C50 H76 I0O sing 284 n n C50 H77 I0O sing 285 n n C50 H78 I0O sing 286 n n C8 H79 I0O sing 287 n n N16 H80 I0O sing 288 n n N16 H81 I0O sing 289 n n O14 H83 I0O sing 290 n n O15 H84 I0O sing 291 n n O3 H85 I0O sing 292 n n # _atom_sites.entry_id 7TCG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id I0O _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 701 _pdbx_nonpoly_scheme.pdb_mon_id I0O _pdbx_nonpoly_scheme.auth_mon_id AUP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I0O . . . D 3 137.693 133.803 98.329 1 25.95 ? C1 I0O 701 A 1 HETATM 2 C C2 I0O . . . D 3 137.894 134.345 99.711 1 25.95 ? C2 I0O 701 A 1 HETATM 3 C C3 I0O . . . D 3 137.07 134.158 100.737 1 25.95 ? C3 I0O 701 A 1 HETATM 4 C C4 I0O . . . D 3 137.282 134.852 102.054 1 25.95 ? C4 I0O 701 A 1 HETATM 5 C C5 I0O . . . D 3 138.518 135.729 102.086 1 25.95 ? C5 I0O 701 A 1 HETATM 6 C C6 I0O . . . D 3 135.134 134.257 95.364 1 25.95 ? C6 I0O 701 A 1 HETATM 7 C C7 I0O . . . D 3 134.326 135.306 94.609 1 25.95 ? C7 I0O 701 A 1 HETATM 8 C C9 I0O . . . D 3 135.4 134.274 92.599 1 25.95 ? C9 I0O 701 A 1 HETATM 9 C C15 I0O . . . D 3 139.666 137.484 105.386 1 25.95 ? C15 I0O 701 A 1 HETATM 10 C C16 I0O . . . D 3 138.506 138.46 105.464 1 25.95 ? C16 I0O 701 A 1 HETATM 11 C C17 I0O . . . D 3 137.252 137.843 106.005 1 25.95 ? C17 I0O 701 A 1 HETATM 12 C C18 I0O . . . D 3 136.46 138.293 106.974 1 25.95 ? C18 I0O 701 A 1 HETATM 13 C C19 I0O . . . D 3 135.272 137.538 107.488 1 25.95 ? C19 I0O 701 A 1 HETATM 14 C C24 I0O . . . D 3 140.162 139.364 111.072 1 25.95 ? C24 I0O 701 A 1 HETATM 15 C C25 I0O . . . D 3 138.139 140.835 111.499 1 25.95 ? C25 I0O 701 A 1 HETATM 16 C C26 I0O . . . D 3 138.971 141.294 112.679 1 25.95 ? C26 I0O 701 A 1 HETATM 17 C C27 I0O . . . D 3 138.28 142.324 113.519 1 25.95 ? C27 I0O 701 A 1 HETATM 18 C C28 I0O . . . D 3 137.916 142.227 114.794 1 25.95 ? C28 I0O 701 A 1 HETATM 19 C C29 I0O . . . D 3 137.378 143.371 115.598 1 25.95 ? C29 I0O 701 A 1 HETATM 20 C C36 I0O . . . D 3 135.953 136.38 115.907 1 25.95 ? C36 I0O 701 A 1 HETATM 21 C C37 I0O . . . D 3 136.44 136.463 114.492 1 25.95 ? C37 I0O 701 A 1 HETATM 22 C C38 I0O . . . D 3 135.724 136.356 113.376 1 25.95 ? C38 I0O 701 A 1 HETATM 23 C C39 I0O . . . D 3 134.23 136.246 113.359 1 25.95 ? C39 I0O 701 A 1 HETATM 24 C C40 I0O . . . D 3 136.376 136.327 112.022 1 25.95 ? C40 I0O 701 A 1 HETATM 25 C C10 I0O . . . D 3 136.413 133.576 93.489 1 25.95 ? C10 I0O 701 A 1 HETATM 26 C C11 I0O . . . D 3 138.64 136.537 103.343 1 25.95 ? C11 I0O 701 A 1 HETATM 27 C C12 I0O . . . D 3 139.599 136.486 104.263 1 25.95 ? C12 I0O 701 A 1 HETATM 28 C C13 I0O . . . D 3 135.878 133.252 100.672 1 25.95 ? C13 I0O 701 A 1 HETATM 29 C C14 I0O . . . D 3 140.695 135.463 104.26 1 25.95 ? C14 I0O 701 A 1 HETATM 30 C C20 I0O . . . D 3 136.692 139.627 107.625 1 25.95 ? C20 I0O 701 A 1 HETATM 31 C C21 I0O . . . D 3 136.757 139.559 109.138 1 25.95 ? C21 I0O 701 A 1 HETATM 32 C C22 I0O . . . D 3 138.101 139.175 109.676 1 25.95 ? C22 I0O 701 A 1 HETATM 33 C C23 I0O . . . D 3 138.768 139.746 110.675 1 25.95 ? C23 I0O 701 A 1 HETATM 34 C C30 I0O . . . D 3 137.992 140.914 115.52 1 25.95 ? C30 I0O 701 A 1 HETATM 35 C C31 I0O . . . D 3 136.722 140.57 116.269 1 25.95 ? C31 I0O 701 A 1 HETATM 36 C C32 I0O . . . D 3 136.509 139.095 116.422 1 25.95 ? C32 I0O 701 A 1 HETATM 37 C C33 I0O . . . D 3 137.221 138.212 117.118 1 25.95 ? C33 I0O 701 A 1 HETATM 38 C C34 I0O . . . D 3 138.291 138.583 118.099 1 25.95 ? C34 I0O 701 A 1 HETATM 39 C C35 I0O . . . D 3 136.992 136.735 116.955 1 25.95 ? C35 I0O 701 A 1 HETATM 40 C C41 I0O . . . D 3 136.959 134.985 111.618 1 25.95 ? C41 I0O 701 A 1 HETATM 41 C C42 I0O . . . D 3 138.202 134.605 112.363 1 25.95 ? C42 I0O 701 A 1 HETATM 42 C C43 I0O . . . D 3 139.414 134.374 111.866 1 25.95 ? C43 I0O 701 A 1 HETATM 43 C C44 I0O . . . D 3 139.744 134.467 110.407 1 25.95 ? C44 I0O 701 A 1 HETATM 44 C C45 I0O . . . D 3 140.564 133.996 112.756 1 25.95 ? C45 I0O 701 A 1 HETATM 45 C C46 I0O . . . D 3 140.41 132.653 113.444 1 25.95 ? C46 I0O 701 A 1 HETATM 46 C C47 I0O . . . D 3 140.384 131.506 112.481 1 25.95 ? C47 I0O 701 A 1 HETATM 47 C C48 I0O . . . D 3 139.458 130.571 112.342 1 25.95 ? C48 I0O 701 A 1 HETATM 48 C C49 I0O . . . D 3 138.238 130.504 113.209 1 25.95 ? C49 I0O 701 A 1 HETATM 49 C C50 I0O . . . D 3 139.545 129.492 111.305 1 25.95 ? C50 I0O 701 A 1 HETATM 50 C C8 I0O . . . D 3 134.929 135.583 93.236 1 25.95 ? C8 I0O 701 A 1 HETATM 51 N N16 I0O . . . D 3 135.899 134.466 91.229 1 25.95 ? N16 I0O 701 A 1 HETATM 52 O O1 I0O . . . D 3 137.592 134.86 97.376 1 25.95 ? O1 I0O 701 A 1 HETATM 53 O O11 I0O . . . D 3 136.432 134.149 94.805 1 25.95 ? O11 I0O 701 A 1 HETATM 54 O O14 I0O . . . D 3 132.974 134.87 94.488 1 25.95 ? O14 I0O 701 A 1 HETATM 55 O O15 I0O . . . D 3 136.035 136.469 93.364 1 25.95 ? O15 I0O 701 A 1 HETATM 56 O O3 I0O . . . D 3 135.812 136.148 98.659 1 25.95 ? O3 I0O 701 A 1 HETATM 57 O O4 I0O . . . D 3 136.458 136.811 96.266 1 25.95 ? O4 I0O 701 A 1 HETATM 58 O O5 I0O . . . D 3 135.195 134.639 96.714 1 25.95 ? O5 I0O 701 A 1 HETATM 59 P P2 I0O . . . D 3 136.238 135.722 97.281 1 25.95 ? P2 I0O 701 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 59 #