data_7TD2 # _model_server_result.job_id zoLEqNhhadUTTxAaw1y2lg _model_server_result.datetime_utc '2024-11-09 01:51:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7td2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7TD2 # _exptl.entry_id 7TD2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 436.52 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TD2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 R CYS 24 1_555 A SG CYS 200 R CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 198 R CYS 188 1_555 A SG CYS 205 R CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? disulf ? disulf3 A SG CYS 294 R CYS 284 1_555 A SG CYS 297 R CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C21 H41 O7 P' _chem_comp.formula_weight 436.52 _chem_comp.id NKP _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '18:1 LPA;oleoyl lysophosphatidic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA PAC NKP sing 235 n n OAB PAC NKP sing 236 n n PAC OAD NKP doub 237 n n PAC OAF NKP sing 238 n n OAE CAK NKP doub 239 n n OAF CAG NKP sing 240 n n CAG CAH NKP sing 241 n n CAH CAI NKP sing 242 n n CAH OBC NKP sing 243 n n CAI OAJ NKP sing 244 n n OAJ CAK NKP sing 245 n n CAK CAL NKP sing 246 n n CAL CAM NKP sing 247 n n CAM CAN NKP sing 248 n n CAN CAO NKP sing 249 n n CAO CAP NKP sing 250 n n CAP CAQ NKP sing 251 n n CAQ CAR NKP sing 252 n n CAR CAS NKP sing 253 n n CAS CAT NKP doub 254 n n CAT CAU NKP sing 255 n n CAU CAV NKP sing 256 n n CAV CAW NKP sing 257 n n CAW CAX NKP sing 258 n n CAX CAY NKP sing 259 n n CAY CAZ NKP sing 260 n n CAZ CBA NKP sing 261 n n CBA CBB NKP sing 262 n n CAG HAG NKP sing 263 n n CAG HAGA NKP sing 264 n n CAH HAH NKP sing 265 n n CAI HAI NKP sing 266 n n CAI HAIA NKP sing 267 n n CAL HAL NKP sing 268 n n CAL HALA NKP sing 269 n n CAM HAM NKP sing 270 n n CAM HAMA NKP sing 271 n n CAN HAN NKP sing 272 n n CAN HANA NKP sing 273 n n CAO HAO NKP sing 274 n n CAO HAOA NKP sing 275 e n CAP HAP NKP sing 276 n n CAP HAPA NKP sing 277 n n CAQ HAQ NKP sing 278 n n CAQ HAQA NKP sing 279 n n CAR HAR NKP sing 280 n n CAR HARA NKP sing 281 n n CAS HAS NKP sing 282 n n CAT HAT NKP sing 283 n n CAU HAU NKP sing 284 n n CAU HAUA NKP sing 285 n n CAV HAV NKP sing 286 n n CAV HAVA NKP sing 287 n n CAW HAW NKP sing 288 n n CAW HAWA NKP sing 289 n n CAX HAX NKP sing 290 n n CAX HAXA NKP sing 291 n n CAY HAY NKP sing 292 n n CAY HAYA NKP sing 293 n n CAZ HAZ NKP sing 294 n n CAZ HAZA NKP sing 295 n n CBA HBA NKP sing 296 n n CBA HBAA NKP sing 297 n n CBB HBB NKP sing 298 n n CBB HBBA NKP sing 299 n n CBB HBBB NKP sing 300 n n OBC HOBC NKP sing 301 n n OAA HOAA NKP sing 302 n n OAB HOAB NKP sing 303 n n # _atom_sites.entry_id 7TD2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id NKP _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id NKP _pdbx_nonpoly_scheme.auth_mon_id NKP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA NKP . . . E 5 78.257 59.844 134.274 1 65.18 ? OAA NKP 401 R 1 HETATM 2 O OAB NKP . . . E 5 77.771 57.711 133.137 1 65.18 ? OAB NKP 401 R 1 HETATM 3 P PAC NKP . . . E 5 78.866 58.652 133.576 1 65.18 ? PAC NKP 401 R 1 HETATM 4 O OAD NKP . . . E 5 79.8 57.937 134.522 1 65.18 ? OAD NKP 401 R 1 HETATM 5 O OAE NKP . . . E 5 81.244 59.029 126.723 1 65.18 ? OAE NKP 401 R 1 HETATM 6 O OAF NKP . . . E 5 79.708 59.163 132.257 1 65.18 ? OAF NKP 401 R 1 HETATM 7 C CAG NKP . . . E 5 79.042 59.967 131.329 1 65.18 ? CAG NKP 401 R 1 HETATM 8 C CAH NKP . . . E 5 79.997 60.337 130.192 1 65.18 ? CAH NKP 401 R 1 HETATM 9 C CAI NKP . . . E 5 79.785 59.444 128.97 1 65.18 ? CAI NKP 401 R 1 HETATM 10 O OAJ NKP . . . E 5 80.835 58.523 128.881 1 65.18 ? OAJ NKP 401 R 1 HETATM 11 C CAK NKP . . . E 5 81.669 58.648 127.761 1 65.18 ? CAK NKP 401 R 1 HETATM 12 C CAL NKP . . . E 5 83.143 58.274 127.879 1 65.18 ? CAL NKP 401 R 1 HETATM 13 C CAM NKP . . . E 5 83.557 57.479 126.646 1 65.18 ? CAM NKP 401 R 1 HETATM 14 C CAN NKP . . . E 5 85.066 57.257 126.664 1 65.18 ? CAN NKP 401 R 1 HETATM 15 C CAO NKP . . . E 5 85.391 55.88 126.09 1 65.18 ? CAO NKP 401 R 1 HETATM 16 C CAP NKP . . . E 5 85.031 55.844 124.607 1 65.18 ? CAP NKP 401 R 1 HETATM 17 C CAQ NKP . . . E 5 85.55 54.551 123.978 1 65.18 ? CAQ NKP 401 R 1 HETATM 18 C CAR NKP . . . E 5 84.851 54.298 122.645 1 65.18 ? CAR NKP 401 R 1 HETATM 19 C CAS NKP . . . E 5 84.842 55.6 121.857 1 65.18 ? CAS NKP 401 R 1 HETATM 20 C CAT NKP . . . E 5 83.724 56.267 121.686 1 65.18 ? CAT NKP 401 R 1 HETATM 21 C CAU NKP . . . E 5 83.759 57.571 120.903 1 65.18 ? CAU NKP 401 R 1 HETATM 22 C CAV NKP . . . E 5 83.96 58.717 121.889 1 65.18 ? CAV NKP 401 R 1 HETATM 23 C CAW NKP . . . E 5 84.382 59.971 121.127 1 65.18 ? CAW NKP 401 R 1 HETATM 24 C CAX NKP . . . E 5 84.08 61.22 121.953 1 65.18 ? CAX NKP 401 R 1 HETATM 25 C CAY NKP . . . E 5 85.372 61.948 122.321 1 65.18 ? CAY NKP 401 R 1 HETATM 26 C CAZ NKP . . . E 5 86.013 61.345 123.57 1 65.18 ? CAZ NKP 401 R 1 HETATM 27 C CBA NKP . . . E 5 85.241 61.769 124.816 1 65.18 ? CBA NKP 401 R 1 HETATM 28 C CBB NKP . . . E 5 85.994 61.303 126.057 1 65.18 ? CBB NKP 401 R 1 HETATM 29 O OBC NKP . . . E 5 79.775 61.669 129.825 1 65.18 ? OBC NKP 401 R 1 HETATM 30 H HAG NKP . . . E 5 78.708 60.873 131.822 1 65.18 ? HAG NKP 401 R 1 HETATM 31 H HAGA NKP . . . E 5 78.179 59.433 130.946 1 65.18 ? HAGA NKP 401 R 1 HETATM 32 H HAH NKP . . . E 5 81.017 60.229 130.537 1 65.18 ? HAH NKP 401 R 1 HETATM 33 H HAI NKP . . . E 5 79.759 60.067 128.083 1 65.18 ? HAI NKP 401 R 1 HETATM 34 H HAIA NKP . . . E 5 78.848 58.906 129.045 1 65.18 ? HAIA NKP 401 R 1 HETATM 35 H HAL NKP . . . E 5 83.744 59.174 127.948 1 65.18 ? HAL NKP 401 R 1 HETATM 36 H HALA NKP . . . E 5 83.29 57.669 128.767 1 65.18 ? HALA NKP 401 R 1 HETATM 37 H HAM NKP . . . E 5 83.052 56.519 126.639 1 65.18 ? HAM NKP 401 R 1 HETATM 38 H HAMA NKP . . . E 5 83.286 58.025 125.749 1 65.18 ? HAMA NKP 401 R 1 HETATM 39 H HAN NKP . . . E 5 85.552 58.021 126.068 1 65.18 ? HAN NKP 401 R 1 HETATM 40 H HANA NKP . . . E 5 85.429 57.316 127.685 1 65.18 ? HANA NKP 401 R 1 HETATM 41 H HAO NKP . . . E 5 86.454 55.699 126.202 1 65.18 ? HAO NKP 401 R 1 HETATM 42 H HAOA NKP . . . E 5 84.832 55.119 126.625 1 65.18 ? HAOA NKP 401 R 1 HETATM 43 H HAP NKP . . . E 5 83.953 55.886 124.488 1 65.18 ? HAP NKP 401 R 1 HETATM 44 H HAPA NKP . . . E 5 85.474 56.702 124.112 1 65.18 ? HAPA NKP 401 R 1 HETATM 45 H HAQ NKP . . . E 5 86.614 54.643 123.798 1 65.18 ? HAQ NKP 401 R 1 HETATM 46 H HAQA NKP . . . E 5 85.357 53.724 124.653 1 65.18 ? HAQA NKP 401 R 1 HETATM 47 H HAR NKP . . . E 5 83.832 53.972 122.821 1 65.18 ? HAR NKP 401 R 1 HETATM 48 H HARA NKP . . . E 5 85.382 53.536 122.087 1 65.18 ? HARA NKP 401 R 1 HETATM 49 H HAS NKP . . . E 5 85.764 55.982 121.439 1 65.18 ? HAS NKP 401 R 1 HETATM 50 H HAT NKP . . . E 5 82.795 55.9 122.103 1 65.18 ? HAT NKP 401 R 1 HETATM 51 H HAU NKP . . . E 5 84.581 57.546 120.194 1 65.18 ? HAU NKP 401 R 1 HETATM 52 H HAUA NKP . . . E 5 82.823 57.704 120.374 1 65.18 ? HAUA NKP 401 R 1 HETATM 53 H HAV NKP . . . E 5 83.028 58.897 122.413 1 65.18 ? HAV NKP 401 R 1 HETATM 54 H HAVA NKP . . . E 5 84.732 58.45 122.602 1 65.18 ? HAVA NKP 401 R 1 HETATM 55 H HAW NKP . . . E 5 83.831 60.023 120.195 1 65.18 ? HAW NKP 401 R 1 HETATM 56 H HAWA NKP . . . E 5 85.443 59.92 120.908 1 65.18 ? HAWA NKP 401 R 1 HETATM 57 H HAX NKP . . . E 5 83.45 61.885 121.376 1 65.18 ? HAX NKP 401 R 1 HETATM 58 H HAXA NKP . . . E 5 83.552 60.935 122.854 1 65.18 ? HAXA NKP 401 R 1 HETATM 59 H HAY NKP . . . E 5 85.149 62.992 122.512 1 65.18 ? HAY NKP 401 R 1 HETATM 60 H HAYA NKP . . . E 5 86.069 61.88 121.493 1 65.18 ? HAYA NKP 401 R 1 HETATM 61 H HAZ NKP . . . E 5 86.013 60.264 123.491 1 65.18 ? HAZ NKP 401 R 1 HETATM 62 H HAZA NKP . . . E 5 87.033 61.701 123.651 1 65.18 ? HAZA NKP 401 R 1 HETATM 63 H HBA NKP . . . E 5 84.253 61.325 124.813 1 65.18 ? HBA NKP 401 R 1 HETATM 64 H HBAA NKP . . . E 5 85.153 62.85 124.835 1 65.18 ? HBAA NKP 401 R 1 HETATM 65 H HBB NKP . . . E 5 86.867 61.93 126.203 1 65.18 ? HBB NKP 401 R 1 HETATM 66 H HBBA NKP . . . E 5 86.305 60.272 125.923 1 65.18 ? HBBA NKP 401 R 1 HETATM 67 H HBBB NKP . . . E 5 85.344 61.377 126.923 1 65.18 ? HBBB NKP 401 R 1 HETATM 68 H HOBC NKP . . . E 5 80.238 62.239 130.419 1 65.18 ? HOBC NKP 401 R 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 68 #