data_7TDH
#
_model_server_result.job_id            IA3uHoJXiHaHz5IUZ06SGA 
_model_server_result.datetime_utc      '2025-07-31 22:08:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tdh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":5102}' 
#
_entry.id    7TDH 
#
_exptl.entry_id    7TDH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TDH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 K N N 
? 3 N N N 
? 3 O N N 
? 3 R N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 3893 A GLU 3893 1_555 F CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc2 A OE2 GLU 3967 A GLU 3967 1_555 F CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? 
metalc ? metalc3 A SG CYS 4961 A CYS 4961 1_555 E ZN ZN . A ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 A NE2 HIS 4978 A HIS 4978 1_555 E ZN ZN . A ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc5 A NE2 HIS 4983 A HIS 4983 1_555 E ZN ZN . A ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc6 A O THR 5001 A THR 5001 1_555 F CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc7 A SG CYS 5027 A CYS 5027 1_555 E ZN ZN . A ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc8 B OE1 GLU 3893 B GLU 3893 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc9 B SG CYS 4958 B CYS 4958 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc10 B SG CYS 4961 B CYS 4961 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc11 B NE2 HIS 4978 B HIS 4978 1_555 I ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc12 B O THR 5001 B THR 5001 1_555 J CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc13 K CA CA . B CA 5103 1_555 L O2' ACP . B ACP 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? 
metalc ? metalc14 C OE1 GLU 3893 C GLU 3893 1_555 N CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc15 C OE2 GLU 3893 C GLU 3893 1_555 N CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc16 C SG CYS 4961 C CYS 4961 1_555 M ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc17 C NE2 HIS 4978 C HIS 4978 1_555 M ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc18 C NE2 HIS 4983 C HIS 4983 1_555 M ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc19 C O THR 5001 C THR 5001 1_555 N CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc20 C SG CYS 5027 C CYS 5027 1_555 M ZN ZN . C ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc21 D OE1 GLU 3893 D GLU 3893 1_555 R CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc22 D OE2 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc23 D SG CYS 4961 D CYS 4961 1_555 Q ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc24 D NE2 HIS 4978 D HIS 4978 1_555 Q ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc25 D NE2 HIS 4983 D HIS 4983 1_555 Q ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc26 D O THR 5001 D THR 5001 1_555 R CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc27 D SG CYS 5027 D CYS 5027 1_555 Q ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc28 S CA CA . D CA 5103 1_555 T O2' ACP . D ACP 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7TDH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 5101 2 ZN ZN . 
F 3 CA A 1 5102 2 CA CA . 
G 3 CA A 1 5103 6 CA CA . 
H 4 ACP A 1 5104 2 ACP ACP . 
I 2 ZN B 1 5101 1 ZN ZN . 
J 3 CA B 1 5102 1 CA CA . 
K 3 CA B 1 5103 5 CA CA . 
L 4 ACP B 1 5104 1 ACP ACP . 
M 2 ZN C 1 5101 4 ZN ZN . 
N 3 CA C 1 5102 4 CA CA . 
O 3 CA C 1 5103 8 CA CA . 
P 4 ACP C 1 5104 4 ACP ACP . 
Q 2 ZN D 1 5101 3 ZN ZN . 
R 3 CA D 1 5102 3 CA CA . 
S 3 CA D 1 5103 7 CA CA . 
T 4 ACP D 1 5104 3 ACP ACP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               197.591 
_atom_site.Cartn_y               263.544 
_atom_site.Cartn_z               258.853 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           5102 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    420 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#