data_7TEN
#
_model_server_result.job_id            848R11XEf0pNsrOgPglTaQ 
_model_server_result.datetime_utc      '2025-01-02 19:47:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ten 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":501}' 
#
_entry.id    7TEN 
#
_exptl.entry_id    7TEN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         60.75 
_cell.angle_beta          87.16 
_cell.angle_gamma         68.4 
_cell.entry_id            7TEN 
_cell.length_a            112.608 
_cell.length_b            137.613 
_cell.length_c            138.023 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TEN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
? 2 EA N N 
? 2 GA N N 
? 2 IA N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7TEN 
_atom_sites.fract_transf_matrix[1][1]    0.00888 
_atom_sites.fract_transf_matrix[1][2]    -0.003517 
_atom_sites.fract_transf_matrix[1][3]    0.001554 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007816 
_atom_sites.fract_transf_matrix[2][3]    -0.004591 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008413 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 ADP A 1 501 501 ADP ADP . 
N 3 P3S A 1 502 601 P3S P3S . 
O 2 ADP E 1 501 501 ADP ADP . 
P 3 P3S E 1 502 601 P3S P3S . 
Q 2 ADP B 1 501 501 ADP ADP . 
R 3 P3S B 1 502 601 P3S P3S . 
S 2 ADP D 1 501 501 ADP ADP . 
T 3 P3S D 1 502 601 P3S P3S . 
U 2 ADP H 1 501 501 ADP ADP . 
V 3 P3S H 1 502 601 P3S P3S . 
W 2 ADP J 1 501 501 ADP ADP . 
X 3 P3S J 1 502 601 P3S P3S . 
Y 2 ADP M 1 501 501 ADP ADP . 
Z 3 P3S M 1 502 601 P3S P3S . 
AA 2 ADP O 1 501 501 ADP ADP . 
BA 3 P3S O 1 502 601 P3S P3S . 
CA 2 ADP Q 1 501 501 ADP ADP . 
DA 3 P3S Q 1 502 601 P3S P3S . 
EA 2 ADP S 1 501 501 ADP ADP . 
FA 3 P3S S 1 502 601 P3S P3S . 
GA 2 ADP U 1 501 501 ADP ADP . 
HA 3 P3S U 1 502 601 P3S P3S . 
IA 2 ADP W 1 501 501 ADP ADP . 
JA 3 P3S W 1 502 601 P3S P3S . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . Q 2 52.576 -11.195 0.706 1 112.19 ? PB ADP 501 B 1 
HETATM 2 O O1B ADP . . . Q 2 51.832 -11.003 -0.591 1 111.75 ? O1B ADP 501 B 1 
HETATM 3 O O2B ADP . . . Q 2 51.795 -11.912 1.788 1 105.45 ? O2B ADP 501 B 1 
HETATM 4 O O3B ADP . . . Q 2 53.297 -9.963 1.188 1 119.57 ? O3B ADP 501 B 1 
HETATM 5 P PA ADP . . . Q 2 53.66 -13.754 0.239 1 101.44 ? PA ADP 501 B 1 
HETATM 6 O O1A ADP . . . Q 2 52.197 -14.12 0.181 1 97.03 ? O1A ADP 501 B 1 
HETATM 7 O O2A ADP . . . Q 2 54.571 -14.36 1.283 1 105.23 ? O2A ADP 501 B 1 
HETATM 8 O O3A ADP . . . Q 2 53.803 -12.157 0.316 1 107.67 ? O3A ADP 501 B 1 
HETATM 9 O O5' ADP . . . Q 2 54.284 -14.022 -1.218 1 93.35 ? O5' ADP 501 B 1 
HETATM 10 C C5' ADP . . . Q 2 55.454 -14.803 -1.392 1 87.44 ? C5' ADP 501 B 1 
HETATM 11 C C4' ADP . . . Q 2 55.853 -14.738 -2.856 1 85.12 ? C4' ADP 501 B 1 
HETATM 12 O O4' ADP . . . Q 2 56.568 -13.533 -3.165 1 85.33 ? O4' ADP 501 B 1 
HETATM 13 C C3' ADP . . . Q 2 56.788 -15.89 -3.174 1 90.06 ? C3' ADP 501 B 1 
HETATM 14 O O3' ADP . . . Q 2 56.133 -16.865 -3.992 1 93.83 ? O3' ADP 501 B 1 
HETATM 15 C C2' ADP . . . Q 2 57.961 -15.266 -3.906 1 86.26 ? C2' ADP 501 B 1 
HETATM 16 O O2' ADP . . . Q 2 58.235 -15.948 -5.132 1 84.71 ? O2' ADP 501 B 1 
HETATM 17 C C1' ADP . . . Q 2 57.557 -13.824 -4.157 1 83.45 ? C1' ADP 501 B 1 
HETATM 18 N N9 ADP . . . Q 2 58.776 -12.994 -4.023 1 90.38 ? N9 ADP 501 B 1 
HETATM 19 C C8 ADP . . . Q 2 59.373 -12.676 -2.862 1 97.45 ? C8 ADP 501 B 1 
HETATM 20 N N7 ADP . . . Q 2 60.481 -11.922 -3.075 1 103.5 ? N7 ADP 501 B 1 
HETATM 21 C C5 ADP . . . Q 2 60.611 -11.758 -4.403 1 101.95 ? C5 ADP 501 B 1 
HETATM 22 C C6 ADP . . . Q 2 61.561 -11.067 -5.302 1 107.93 ? C6 ADP 501 B 1 
HETATM 23 N N6 ADP . . . Q 2 62.624 -10.387 -4.814 1 114.29 ? N6 ADP 501 B 1 
HETATM 24 N N1 ADP . . . Q 2 61.334 -11.14 -6.631 1 105.95 ? N1 ADP 501 B 1 
HETATM 25 C C2 ADP . . . Q 2 60.282 -11.812 -7.134 1 98.47 ? C2 ADP 501 B 1 
HETATM 26 N N3 ADP . . . Q 2 59.38 -12.46 -6.377 1 95.58 ? N3 ADP 501 B 1 
HETATM 27 C C4 ADP . . . Q 2 59.485 -12.47 -5.027 1 96.07 ? C4 ADP 501 B 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#