data_7TGQ # _model_server_result.job_id MzVkEETmFahjXkJGB8uqTw _model_server_result.datetime_utc '2025-01-03 07:50:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 7TGQ # _exptl.entry_id 7TGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7TGQ _cell.length_a 89.958 _cell.length_b 89.958 _cell.length_c 52.807 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall 'P 3 2"' _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 16 A CYS 513 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 A SG CYS 24 A CYS 521 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 A SG CYS 30 A CYS 527 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A NE2 HIS 34 A HIS 531 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 19 n y N1 C6 APR doub 20 n y C2 N3 APR doub 21 n y C2 H2 APR sing 22 n n N3 C4 APR sing 23 n y C4 C5 APR doub 24 n y C4 N9 APR sing 25 n y C5 C6 APR sing 26 n y C5 N7 APR sing 27 n y C6 N6 APR sing 28 n n N6 H61 APR sing 29 n n N6 H62 APR sing 30 n n N7 C8 APR doub 31 n y C8 N9 APR sing 32 n y C8 H8 APR sing 33 n n N9 C1' APR sing 34 n n C1' C2' APR sing 35 n n C1' O4' APR sing 36 n n C1' "H'1" APR sing 37 n n C2' O2' APR sing 38 n n C2' C3' APR sing 39 n n C2' "H'2" APR sing 40 n n O2' "HO'2" APR sing 41 n n C3' O3' APR sing 42 n n C3' C4' APR sing 43 n n C3' "H'3" APR sing 44 n n O3' "HO'3" APR sing 45 n n O4' C4' APR sing 46 n n C4' C5' APR sing 47 n n C4' "H'4" APR sing 48 n n C5' O5' APR sing 49 n n C5' "H5'1" APR sing 50 n n C5' "H5'2" APR sing 51 n n O5' PA APR sing 52 n n PA O1A APR doub 53 n n PA O2A APR sing 54 n n PA O3A APR sing 55 n n O2A HOA2 APR sing 56 n n O3A PB APR sing 57 n n PB O1B APR doub 58 n n PB O2B APR sing 59 n n PB O5D APR sing 60 n n O2B HOB2 APR sing 61 n n O5D C5D APR sing 62 n n C5D C4D APR sing 63 n n C5D H5R1 APR sing 64 n n C5D H5R2 APR sing 65 n n O4D C1D APR sing 66 n n O4D C4D APR sing 67 n n O1D C1D APR sing 68 n n O1D HOR1 APR sing 69 n n C1D C2D APR sing 70 n n C1D "HR'1" APR sing 71 n n O2D C2D APR sing 72 n n O2D HOR2 APR sing 73 n n C2D C3D APR sing 74 n n C2D "HR'2" APR sing 75 n n O3D C3D APR sing 76 n n O3D HOR3 APR sing 77 n n C3D C4D APR sing 78 n n C3D "HR'3" APR sing 79 n n C4D "HR'4" APR sing 80 n n # _atom_sites.entry_id 7TGQ _atom_sites.fract_transf_matrix[1][1] 0.011116 _atom_sites.fract_transf_matrix[1][2] 0.006418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 701 ZN ZN . C 3 APR A 1 702 1 APR APR . D 4 ACT A 1 703 1 ACT ACT . E 4 ACT A 1 704 2 ACT ACT . F 5 HOH A 1 801 92 HOH HOH . F 5 HOH A 2 802 36 HOH HOH . F 5 HOH A 3 803 52 HOH HOH . F 5 HOH A 4 804 27 HOH HOH . F 5 HOH A 5 805 35 HOH HOH . F 5 HOH A 6 806 16 HOH HOH . F 5 HOH A 7 807 88 HOH HOH . F 5 HOH A 8 808 60 HOH HOH . F 5 HOH A 9 809 3 HOH HOH . F 5 HOH A 10 810 65 HOH HOH . F 5 HOH A 11 811 41 HOH HOH . F 5 HOH A 12 812 81 HOH HOH . F 5 HOH A 13 813 14 HOH HOH . F 5 HOH A 14 814 7 HOH HOH . F 5 HOH A 15 815 66 HOH HOH . F 5 HOH A 16 816 18 HOH HOH . F 5 HOH A 17 817 39 HOH HOH . F 5 HOH A 18 818 90 HOH HOH . F 5 HOH A 19 819 50 HOH HOH . F 5 HOH A 20 820 23 HOH HOH . F 5 HOH A 21 821 82 HOH HOH . F 5 HOH A 22 822 5 HOH HOH . F 5 HOH A 23 823 47 HOH HOH . F 5 HOH A 24 824 25 HOH HOH . F 5 HOH A 25 825 43 HOH HOH . F 5 HOH A 26 826 2 HOH HOH . F 5 HOH A 27 827 64 HOH HOH . F 5 HOH A 28 828 34 HOH HOH . F 5 HOH A 29 829 12 HOH HOH . F 5 HOH A 30 830 54 HOH HOH . F 5 HOH A 31 831 31 HOH HOH . F 5 HOH A 32 832 42 HOH HOH . F 5 HOH A 33 833 75 HOH HOH . F 5 HOH A 34 834 13 HOH HOH . F 5 HOH A 35 835 29 HOH HOH . F 5 HOH A 36 836 69 HOH HOH . F 5 HOH A 37 837 10 HOH HOH . F 5 HOH A 38 838 22 HOH HOH . F 5 HOH A 39 839 76 HOH HOH . F 5 HOH A 40 840 28 HOH HOH . F 5 HOH A 41 841 11 HOH HOH . F 5 HOH A 42 842 51 HOH HOH . F 5 HOH A 43 843 80 HOH HOH . F 5 HOH A 44 844 83 HOH HOH . F 5 HOH A 45 845 77 HOH HOH . F 5 HOH A 46 846 55 HOH HOH . F 5 HOH A 47 847 1 HOH HOH . F 5 HOH A 48 848 91 HOH HOH . F 5 HOH A 49 849 86 HOH HOH . F 5 HOH A 50 850 53 HOH HOH . F 5 HOH A 51 851 57 HOH HOH . F 5 HOH A 52 852 17 HOH HOH . F 5 HOH A 53 853 19 HOH HOH . F 5 HOH A 54 854 6 HOH HOH . F 5 HOH A 55 855 33 HOH HOH . F 5 HOH A 56 856 21 HOH HOH . F 5 HOH A 57 857 49 HOH HOH . F 5 HOH A 58 858 68 HOH HOH . F 5 HOH A 59 859 63 HOH HOH . F 5 HOH A 60 860 38 HOH HOH . F 5 HOH A 61 861 62 HOH HOH . F 5 HOH A 62 862 24 HOH HOH . F 5 HOH A 63 863 79 HOH HOH . F 5 HOH A 64 864 89 HOH HOH . F 5 HOH A 65 865 40 HOH HOH . F 5 HOH A 66 866 58 HOH HOH . F 5 HOH A 67 867 48 HOH HOH . F 5 HOH A 68 868 44 HOH HOH . F 5 HOH A 69 869 85 HOH HOH . F 5 HOH A 70 870 56 HOH HOH . F 5 HOH A 71 871 9 HOH HOH . F 5 HOH A 72 872 37 HOH HOH . F 5 HOH A 73 873 30 HOH HOH . F 5 HOH A 74 874 72 HOH HOH . F 5 HOH A 75 875 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . C 3 55.828 1.309 -12.36 1 28.57 ? N1 APR 702 A 1 HETATM 2 C C2 APR . . . C 3 57.19 1.108 -12.589 1 31.42 ? C2 APR 702 A 1 HETATM 3 N N3 APR . . . C 3 57.81 1.695 -13.683 1 34.18 ? N3 APR 702 A 1 HETATM 4 C C4 APR . . . C 3 57.074 2.498 -14.545 1 35.44 ? C4 APR 702 A 1 HETATM 5 C C5 APR . . . C 3 55.708 2.693 -14.314 1 32.44 ? C5 APR 702 A 1 HETATM 6 C C6 APR . . . C 3 55.079 2.072 -13.212 1 28.65 ? C6 APR 702 A 1 HETATM 7 N N6 APR . . . C 3 53.716 2.301 -13.017 1 23.98 ? N6 APR 702 A 1 HETATM 8 N N7 APR . . . C 3 55.212 3.517 -15.322 1 30.82 ? N7 APR 702 A 1 HETATM 9 C C8 APR . . . C 3 56.255 3.826 -16.173 1 38.95 ? C8 APR 702 A 1 HETATM 10 N N9 APR . . . C 3 57.402 3.208 -15.707 1 39 ? N9 APR 702 A 1 HETATM 11 C C1' APR . . . C 3 58.688 3.231 -16.299 1 46.33 ? C1' APR 702 A 1 HETATM 12 C C2' APR . . . C 3 58.604 3.406 -17.853 1 45.93 ? C2' APR 702 A 1 HETATM 13 O O2' APR . . . C 3 58.5 2.198 -18.557 1 45.19 ? O2' APR 702 A 1 HETATM 14 C C3' APR . . . C 3 59.977 4.086 -18.092 1 50.04 ? C3' APR 702 A 1 HETATM 15 O O3' APR . . . C 3 60.985 3.07 -18.081 1 52.48 ? O3' APR 702 A 1 HETATM 16 O O4' APR . . . C 3 59.529 4.284 -15.737 1 51.31 ? O4' APR 702 A 1 HETATM 17 C C4' APR . . . C 3 60.142 4.984 -16.853 1 52.21 ? C4' APR 702 A 1 HETATM 18 C C5' APR . . . C 3 59.427 6.327 -16.999 1 46.4 ? C5' APR 702 A 1 HETATM 19 O O5' APR . . . C 3 58.557 6.299 -18.081 1 39.24 ? O5' APR 702 A 1 HETATM 20 P PA APR . . . C 3 57.293 7.262 -17.837 1 42.58 ? PA APR 702 A 1 HETATM 21 O O1A APR . . . C 3 55.942 6.49 -18.21 1 42.06 -1 O1A APR 702 A 1 HETATM 22 O O2A APR . . . C 3 57.192 7.775 -16.342 1 38.89 ? O2A APR 702 A 1 HETATM 23 O O3A APR . . . C 3 57.265 8.536 -18.86 1 65.43 ? O3A APR 702 A 1 HETATM 24 P PB APR . . . C 3 58.523 9.53 -19.112 1 59.57 ? PB APR 702 A 1 HETATM 25 O O1B APR . . . C 3 58.937 10.229 -17.719 1 61.93 -1 O1B APR 702 A 1 HETATM 26 O O2B APR . . . C 3 57.994 10.644 -20.107 1 52.28 ? O2B APR 702 A 1 HETATM 27 O O5D APR . . . C 3 59.732 8.703 -19.728 1 57.94 ? O5D APR 702 A 1 HETATM 28 C C5D APR . . . C 3 60.988 9.052 -19.111 1 66.22 ? C5D APR 702 A 1 HETATM 29 O O4D APR . . . C 3 61.1 11.135 -20.397 1 79.35 ? O4D APR 702 A 1 HETATM 30 O O1D APR . . . C 3 61.564 13.371 -19.801 1 80.29 ? O1D APR 702 A 1 HETATM 31 C C1D APR . . . C 3 62.053 12.223 -20.502 1 86.26 ? C1D APR 702 A 1 HETATM 32 O O2D APR . . . C 3 64.457 11.842 -20.914 1 76.58 ? O2D APR 702 A 1 HETATM 33 C C2D APR . . . C 3 63.422 11.742 -19.927 1 82.59 ? C2D APR 702 A 1 HETATM 34 O O3D APR . . . C 3 64.209 9.441 -20.123 1 83.6 ? O3D APR 702 A 1 HETATM 35 C C3D APR . . . C 3 63.205 10.254 -19.532 1 80.64 ? C3D APR 702 A 1 HETATM 36 C C4D APR . . . C 3 61.806 9.897 -20.106 1 80.3 ? C4D APR 702 A 1 HETATM 37 H H2 APR . . . C 3 57.684 0.577 -12.007 1 37.78 ? H2 APR 702 A 1 HETATM 38 H H61 APR . . . C 3 53.451 3.038 -12.653 1 28.85 ? H61 APR 702 A 1 HETATM 39 H H62 APR . . . C 3 53.145 1.712 -13.247 1 28.85 ? H62 APR 702 A 1 HETATM 40 H H8 APR . . . C 3 56.197 4.36 -16.933 1 46.82 ? H8 APR 702 A 1 HETATM 41 H "H'1" APR . . . C 3 59.093 2.373 -16.1 1 55.67 ? "H'1" APR 702 A 1 HETATM 42 H "H'2" APR . . . C 3 57.821 3.891 -18.157 1 55.19 ? "H'2" APR 702 A 1 HETATM 43 H "HO'2" APR . . . C 3 57.936 2.319 -19.182 1 54.3 ? "HO'2" APR 702 A 1 HETATM 44 H "H'3" APR . . . C 3 60.04 4.574 -18.928 1 60.12 ? "H'3" APR 702 A 1 HETATM 45 H "HO'3" APR . . . C 3 61.477 3.177 -18.783 1 63.05 ? "HO'3" APR 702 A 1 HETATM 46 H "H'4" APR . . . C 3 61.088 5.16 -16.728 1 62.73 ? "H'4" APR 702 A 1 HETATM 47 H "H5'1" APR . . . C 3 60.085 7.026 -17.137 1 55.76 ? "H5'1" APR 702 A 1 HETATM 48 H "H5'2" APR . . . C 3 58.924 6.51 -16.19 1 55.76 ? "H5'2" APR 702 A 1 HETATM 49 H H5R1 APR . . . C 3 61.478 8.245 -18.888 1 79.54 ? H5R1 APR 702 A 1 HETATM 50 H H5R2 APR . . . C 3 60.824 9.565 -18.305 1 79.54 ? H5R2 APR 702 A 1 HETATM 51 H HOR1 APR . . . C 3 61.381 13.975 -20.37 1 96.42 ? HOR1 APR 702 A 1 HETATM 52 H "HR'1" APR . . . C 3 62.175 12.479 -21.43 1 103.59 ? "HR'1" APR 702 A 1 HETATM 53 H HOR2 APR . . . C 3 64.993 12.459 -20.681 1 91.97 ? HOR2 APR 702 A 1 HETATM 54 H "HR'2" APR . . . C 3 63.699 12.285 -19.172 1 99.18 ? "HR'2" APR 702 A 1 HETATM 55 H HOR3 APR . . . C 3 64.71 9.143 -19.503 1 100.39 ? HOR3 APR 702 A 1 HETATM 56 H "HR'3" APR . . . C 3 63.255 10.112 -18.574 1 96.85 ? "HR'3" APR 702 A 1 HETATM 57 H "HR'4" APR . . . C 3 61.921 9.37 -20.912 1 96.44 ? "HR'4" APR 702 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 57 #