data_7TH5 # _model_server_result.job_id eASGngWmA_hbYXQzH-MTLg _model_server_result.datetime_utc '2024-10-10 11:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7th5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7TH5 # _exptl.entry_id 7TH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TH5 _cell.length_a 60.496 _cell.length_b 91.288 _cell.length_c 130.261 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 7 A LEU 7 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 A O ARG 10 A ARG 10 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A OE2 GLU 267 A GLU 267 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 D NA NA . A NA 501 1_555 G O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc5 D NA NA . A NA 501 1_555 G O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc6 D NA NA . A NA 501 1_555 G O HOH . A HOH 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc7 B O LEU 7 B LEU 7 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc8 B O ARG 10 B ARG 10 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc9 B OE1 GLU 267 B GLU 267 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc10 F NA NA . B NA 501 1_555 H O HOH . B HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc11 F NA NA . B NA 501 1_555 H O HOH . B HOH 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7TH5 _atom_sites.fract_transf_matrix[1][1] 0.01653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 500 500 FAD FAD . D 3 NA A 1 501 501 NA NA . E 2 FAD B 1 500 500 FAD FAD . F 3 NA B 1 501 501 NA NA . G 4 HOH A 1 601 73 HOH HOH . G 4 HOH A 2 602 84 HOH HOH . G 4 HOH A 3 603 119 HOH HOH . G 4 HOH A 4 604 128 HOH HOH . G 4 HOH A 5 605 71 HOH HOH . G 4 HOH A 6 606 107 HOH HOH . G 4 HOH A 7 607 21 HOH HOH . G 4 HOH A 8 608 50 HOH HOH . G 4 HOH A 9 609 93 HOH HOH . G 4 HOH A 10 610 129 HOH HOH . G 4 HOH A 11 611 83 HOH HOH . G 4 HOH A 12 612 81 HOH HOH . G 4 HOH A 13 613 113 HOH HOH . G 4 HOH A 14 614 106 HOH HOH . G 4 HOH A 15 615 116 HOH HOH . G 4 HOH A 16 616 123 HOH HOH . G 4 HOH A 17 617 110 HOH HOH . G 4 HOH A 18 618 33 HOH HOH . G 4 HOH A 19 619 46 HOH HOH . G 4 HOH A 20 620 79 HOH HOH . G 4 HOH A 21 621 18 HOH HOH . G 4 HOH A 22 622 117 HOH HOH . G 4 HOH A 23 623 16 HOH HOH . G 4 HOH A 24 624 10 HOH HOH . G 4 HOH A 25 625 26 HOH HOH . G 4 HOH A 26 626 54 HOH HOH . G 4 HOH A 27 627 88 HOH HOH . G 4 HOH A 28 628 115 HOH HOH . G 4 HOH A 29 629 47 HOH HOH . G 4 HOH A 30 630 150 HOH HOH . G 4 HOH A 31 631 95 HOH HOH . G 4 HOH A 32 632 90 HOH HOH . G 4 HOH A 33 633 17 HOH HOH . G 4 HOH A 34 634 15 HOH HOH . G 4 HOH A 35 635 14 HOH HOH . G 4 HOH A 36 636 3 HOH HOH . G 4 HOH A 37 637 43 HOH HOH . G 4 HOH A 38 638 48 HOH HOH . G 4 HOH A 39 639 55 HOH HOH . G 4 HOH A 40 640 49 HOH HOH . G 4 HOH A 41 641 105 HOH HOH . G 4 HOH A 42 642 114 HOH HOH . G 4 HOH A 43 643 4 HOH HOH . G 4 HOH A 44 644 56 HOH HOH . G 4 HOH A 45 645 86 HOH HOH . G 4 HOH A 46 646 39 HOH HOH . G 4 HOH A 47 647 101 HOH HOH . G 4 HOH A 48 648 8 HOH HOH . G 4 HOH A 49 649 20 HOH HOH . G 4 HOH A 50 650 148 HOH HOH . G 4 HOH A 51 651 53 HOH HOH . G 4 HOH A 52 652 58 HOH HOH . G 4 HOH A 53 653 67 HOH HOH . G 4 HOH A 54 654 75 HOH HOH . G 4 HOH A 55 655 29 HOH HOH . G 4 HOH A 56 656 91 HOH HOH . G 4 HOH A 57 657 96 HOH HOH . G 4 HOH A 58 658 61 HOH HOH . G 4 HOH A 59 659 80 HOH HOH . G 4 HOH A 60 660 51 HOH HOH . G 4 HOH A 61 661 74 HOH HOH . G 4 HOH A 62 662 11 HOH HOH . G 4 HOH A 63 663 94 HOH HOH . G 4 HOH A 64 664 144 HOH HOH . G 4 HOH A 65 665 151 HOH HOH . G 4 HOH A 66 666 1 HOH HOH . G 4 HOH A 67 667 6 HOH HOH . G 4 HOH A 68 668 69 HOH HOH . G 4 HOH A 69 669 111 HOH HOH . G 4 HOH A 70 670 149 HOH HOH . G 4 HOH A 71 671 77 HOH HOH . G 4 HOH A 72 672 7 HOH HOH . G 4 HOH A 73 673 70 HOH HOH . G 4 HOH A 74 674 92 HOH HOH . G 4 HOH A 75 675 155 HOH HOH . G 4 HOH A 76 676 64 HOH HOH . G 4 HOH A 77 677 63 HOH HOH . G 4 HOH A 78 678 143 HOH HOH . G 4 HOH A 79 679 152 HOH HOH . G 4 HOH A 80 680 62 HOH HOH . G 4 HOH A 81 681 137 HOH HOH . G 4 HOH A 82 682 65 HOH HOH . G 4 HOH A 83 683 157 HOH HOH . G 4 HOH A 84 684 136 HOH HOH . H 4 HOH B 1 601 124 HOH HOH . H 4 HOH B 2 602 100 HOH HOH . H 4 HOH B 3 603 99 HOH HOH . H 4 HOH B 4 604 5 HOH HOH . H 4 HOH B 5 605 147 HOH HOH . H 4 HOH B 6 606 122 HOH HOH . H 4 HOH B 7 607 36 HOH HOH . H 4 HOH B 8 608 34 HOH HOH . H 4 HOH B 9 609 102 HOH HOH . H 4 HOH B 10 610 98 HOH HOH . H 4 HOH B 11 611 132 HOH HOH . H 4 HOH B 12 612 37 HOH HOH . H 4 HOH B 13 613 109 HOH HOH . H 4 HOH B 14 614 131 HOH HOH . H 4 HOH B 15 615 22 HOH HOH . H 4 HOH B 16 616 19 HOH HOH . H 4 HOH B 17 617 97 HOH HOH . H 4 HOH B 18 618 127 HOH HOH . H 4 HOH B 19 619 82 HOH HOH . H 4 HOH B 20 620 59 HOH HOH . H 4 HOH B 21 621 42 HOH HOH . H 4 HOH B 22 622 104 HOH HOH . H 4 HOH B 23 623 112 HOH HOH . H 4 HOH B 24 624 89 HOH HOH . H 4 HOH B 25 625 153 HOH HOH . H 4 HOH B 26 626 130 HOH HOH . H 4 HOH B 27 627 125 HOH HOH . H 4 HOH B 28 628 78 HOH HOH . H 4 HOH B 29 629 25 HOH HOH . H 4 HOH B 30 630 126 HOH HOH . H 4 HOH B 31 631 41 HOH HOH . H 4 HOH B 32 632 154 HOH HOH . H 4 HOH B 33 633 120 HOH HOH . H 4 HOH B 34 634 76 HOH HOH . H 4 HOH B 35 635 103 HOH HOH . H 4 HOH B 36 636 44 HOH HOH . H 4 HOH B 37 637 45 HOH HOH . H 4 HOH B 38 638 23 HOH HOH . H 4 HOH B 39 639 40 HOH HOH . H 4 HOH B 40 640 87 HOH HOH . H 4 HOH B 41 641 108 HOH HOH . H 4 HOH B 42 642 72 HOH HOH . H 4 HOH B 43 643 32 HOH HOH . H 4 HOH B 44 644 31 HOH HOH . H 4 HOH B 45 645 27 HOH HOH . H 4 HOH B 46 646 24 HOH HOH . H 4 HOH B 47 647 2 HOH HOH . H 4 HOH B 48 648 60 HOH HOH . H 4 HOH B 49 649 57 HOH HOH . H 4 HOH B 50 650 9 HOH HOH . H 4 HOH B 51 651 13 HOH HOH . H 4 HOH B 52 652 68 HOH HOH . H 4 HOH B 53 653 38 HOH HOH . H 4 HOH B 54 654 85 HOH HOH . H 4 HOH B 55 655 12 HOH HOH . H 4 HOH B 56 656 118 HOH HOH . H 4 HOH B 57 657 141 HOH HOH . H 4 HOH B 58 658 138 HOH HOH . H 4 HOH B 59 659 121 HOH HOH . H 4 HOH B 60 660 133 HOH HOH . H 4 HOH B 61 661 28 HOH HOH . H 4 HOH B 62 662 156 HOH HOH . H 4 HOH B 63 663 66 HOH HOH . H 4 HOH B 64 664 146 HOH HOH . H 4 HOH B 65 665 35 HOH HOH . H 4 HOH B 66 666 52 HOH HOH . H 4 HOH B 67 667 139 HOH HOH . H 4 HOH B 68 668 145 HOH HOH . H 4 HOH B 69 669 142 HOH HOH . H 4 HOH B 70 670 134 HOH HOH . H 4 HOH B 71 671 135 HOH HOH . H 4 HOH B 72 672 140 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -10.001 _atom_site.Cartn_y 21.286 _atom_site.Cartn_z -23.435 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #