data_7TIA # _model_server_result.job_id 1mO6-5Msl3rGqIwk_bUnbg _model_server_result.datetime_utc '2025-03-06 08:59:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7TIA # _exptl.entry_id 7TIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.472 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl [(2S)-3-cyclopropyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.61 _cell.angle_gamma 90 _cell.entry_id 7TIA _cell.length_a 97.551 _cell.length_b 81.778 _cell.length_c 51.876 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -43.206429 0 94.327525 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C12 _struct_conn.ptnr2_label_comp_id XTP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XTP _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.805 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H29 N3 O5' _chem_comp.formula_weight 403.472 _chem_comp.id XTP _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl [(2S)-3-cyclopropyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 XTP sing 378 n n C18 C16 XTP sing 379 n n C27 C28 XTP doub 380 n y C27 C26 XTP sing 381 n y C28 C23 XTP sing 382 n y O21 C22 XTP sing 383 n n O21 C20 XTP sing 384 n n C15 C16 XTP sing 385 n n C15 C14 XTP sing 386 n n N19 C20 XTP sing 387 n n N19 C14 XTP sing 388 n n C17 C16 XTP sing 389 n n C26 C25 XTP doub 390 n y O01 C02 XTP doub 391 n n C23 C22 XTP sing 392 n n C23 C24 XTP doub 393 n y C20 O29 XTP doub 394 n n C25 C24 XTP sing 395 n y C14 C02 XTP sing 396 n n C02 N03 XTP sing 397 n n N03 C04 XTP sing 398 n n C07 C08 XTP sing 399 n n C07 C06 XTP sing 400 n n C04 C12 XTP sing 401 n n C04 C05 XTP sing 402 n n C08 N09 XTP sing 403 n n C12 O13 XTP sing 404 n n C06 C05 XTP sing 405 n n C06 C10 XTP sing 406 n n N09 C10 XTP sing 407 n n C10 O11 XTP doub 408 n n C15 H151 XTP sing 409 n n C15 H152 XTP sing 410 n n C17 H172 XTP sing 411 n n C17 H171 XTP sing 412 n n C22 H221 XTP sing 413 n n C22 H222 XTP sing 414 n n C24 H241 XTP sing 415 n n C26 H261 XTP sing 416 n n C28 H281 XTP sing 417 n n C04 H041 XTP sing 418 n n C05 H052 XTP sing 419 n n C05 H051 XTP sing 420 n n C06 H061 XTP sing 421 n n C07 H071 XTP sing 422 n n C07 H072 XTP sing 423 n n C08 H082 XTP sing 424 n n C08 H081 XTP sing 425 n n C12 H121 XTP sing 426 n n C14 H141 XTP sing 427 n n C16 H161 XTP sing 428 n n C18 H181 XTP sing 429 n n C18 H182 XTP sing 430 n n C25 H251 XTP sing 431 n n C27 H271 XTP sing 432 n n N03 H031 XTP sing 433 n n N09 H091 XTP sing 434 n n N19 H191 XTP sing 435 n n C12 H1 XTP sing 436 n n O13 H2 XTP sing 437 n n # _atom_sites.entry_id 7TIA _atom_sites.fract_transf_matrix[1][1] 0.010251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004694 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XTP A 1 401 401 XTP N14 . C 3 SCN A 1 402 402 SCN SCN . D 4 HOH A 1 501 120 HOH HOH . D 4 HOH A 2 502 125 HOH HOH . D 4 HOH A 3 503 59 HOH HOH . D 4 HOH A 4 504 164 HOH HOH . D 4 HOH A 5 505 132 HOH HOH . D 4 HOH A 6 506 56 HOH HOH . D 4 HOH A 7 507 49 HOH HOH . D 4 HOH A 8 508 35 HOH HOH . D 4 HOH A 9 509 112 HOH HOH . D 4 HOH A 10 510 73 HOH HOH . D 4 HOH A 11 511 89 HOH HOH . D 4 HOH A 12 512 82 HOH HOH . D 4 HOH A 13 513 117 HOH HOH . D 4 HOH A 14 514 115 HOH HOH . D 4 HOH A 15 515 170 HOH HOH . D 4 HOH A 16 516 95 HOH HOH . D 4 HOH A 17 517 13 HOH HOH . D 4 HOH A 18 518 70 HOH HOH . D 4 HOH A 19 519 9 HOH HOH . D 4 HOH A 20 520 135 HOH HOH . D 4 HOH A 21 521 7 HOH HOH . D 4 HOH A 22 522 116 HOH HOH . D 4 HOH A 23 523 94 HOH HOH . D 4 HOH A 24 524 129 HOH HOH . D 4 HOH A 25 525 29 HOH HOH . D 4 HOH A 26 526 22 HOH HOH . D 4 HOH A 27 527 57 HOH HOH . D 4 HOH A 28 528 19 HOH HOH . D 4 HOH A 29 529 150 HOH HOH . D 4 HOH A 30 530 41 HOH HOH . D 4 HOH A 31 531 55 HOH HOH . D 4 HOH A 32 532 58 HOH HOH . D 4 HOH A 33 533 11 HOH HOH . D 4 HOH A 34 534 153 HOH HOH . D 4 HOH A 35 535 67 HOH HOH . D 4 HOH A 36 536 53 HOH HOH . D 4 HOH A 37 537 64 HOH HOH . D 4 HOH A 38 538 30 HOH HOH . D 4 HOH A 39 539 161 HOH HOH . D 4 HOH A 40 540 85 HOH HOH . D 4 HOH A 41 541 84 HOH HOH . D 4 HOH A 42 542 32 HOH HOH . D 4 HOH A 43 543 71 HOH HOH . D 4 HOH A 44 544 10 HOH HOH . D 4 HOH A 45 545 40 HOH HOH . D 4 HOH A 46 546 102 HOH HOH . D 4 HOH A 47 547 34 HOH HOH . D 4 HOH A 48 548 158 HOH HOH . D 4 HOH A 49 549 2 HOH HOH . D 4 HOH A 50 550 54 HOH HOH . D 4 HOH A 51 551 114 HOH HOH . D 4 HOH A 52 552 50 HOH HOH . D 4 HOH A 53 553 173 HOH HOH . D 4 HOH A 54 554 48 HOH HOH . D 4 HOH A 55 555 107 HOH HOH . D 4 HOH A 56 556 143 HOH HOH . D 4 HOH A 57 557 77 HOH HOH . D 4 HOH A 58 558 52 HOH HOH . D 4 HOH A 59 559 63 HOH HOH . D 4 HOH A 60 560 78 HOH HOH . D 4 HOH A 61 561 27 HOH HOH . D 4 HOH A 62 562 79 HOH HOH . D 4 HOH A 63 563 51 HOH HOH . D 4 HOH A 64 564 93 HOH HOH . D 4 HOH A 65 565 16 HOH HOH . D 4 HOH A 66 566 155 HOH HOH . D 4 HOH A 67 567 127 HOH HOH . D 4 HOH A 68 568 3 HOH HOH . D 4 HOH A 69 569 8 HOH HOH . D 4 HOH A 70 570 44 HOH HOH . D 4 HOH A 71 571 98 HOH HOH . D 4 HOH A 72 572 15 HOH HOH . D 4 HOH A 73 573 86 HOH HOH . D 4 HOH A 74 574 1 HOH HOH . D 4 HOH A 75 575 23 HOH HOH . D 4 HOH A 76 576 25 HOH HOH . D 4 HOH A 77 577 5 HOH HOH . D 4 HOH A 78 578 39 HOH HOH . D 4 HOH A 79 579 60 HOH HOH . D 4 HOH A 80 580 21 HOH HOH . D 4 HOH A 81 581 83 HOH HOH . D 4 HOH A 82 582 18 HOH HOH . D 4 HOH A 83 583 37 HOH HOH . D 4 HOH A 84 584 20 HOH HOH . D 4 HOH A 85 585 36 HOH HOH . D 4 HOH A 86 586 145 HOH HOH . D 4 HOH A 87 587 26 HOH HOH . D 4 HOH A 88 588 97 HOH HOH . D 4 HOH A 89 589 80 HOH HOH . D 4 HOH A 90 590 43 HOH HOH . D 4 HOH A 91 591 141 HOH HOH . D 4 HOH A 92 592 142 HOH HOH . D 4 HOH A 93 593 65 HOH HOH . D 4 HOH A 94 594 157 HOH HOH . D 4 HOH A 95 595 33 HOH HOH . D 4 HOH A 96 596 104 HOH HOH . D 4 HOH A 97 597 103 HOH HOH . D 4 HOH A 98 598 75 HOH HOH . D 4 HOH A 99 599 46 HOH HOH . D 4 HOH A 100 600 152 HOH HOH . D 4 HOH A 101 601 100 HOH HOH . D 4 HOH A 102 602 28 HOH HOH . D 4 HOH A 103 603 124 HOH HOH . D 4 HOH A 104 604 154 HOH HOH . D 4 HOH A 105 605 12 HOH HOH . D 4 HOH A 106 606 14 HOH HOH . D 4 HOH A 107 607 42 HOH HOH . D 4 HOH A 108 608 61 HOH HOH . D 4 HOH A 109 609 137 HOH HOH . D 4 HOH A 110 610 17 HOH HOH . D 4 HOH A 111 611 87 HOH HOH . D 4 HOH A 112 612 101 HOH HOH . D 4 HOH A 113 613 109 HOH HOH . D 4 HOH A 114 614 24 HOH HOH . D 4 HOH A 115 615 166 HOH HOH . D 4 HOH A 116 616 171 HOH HOH . D 4 HOH A 117 617 131 HOH HOH . D 4 HOH A 118 618 121 HOH HOH . D 4 HOH A 119 619 66 HOH HOH . D 4 HOH A 120 620 76 HOH HOH . D 4 HOH A 121 621 45 HOH HOH . D 4 HOH A 122 622 169 HOH HOH . D 4 HOH A 123 623 74 HOH HOH . D 4 HOH A 124 624 146 HOH HOH . D 4 HOH A 125 625 168 HOH HOH . D 4 HOH A 126 626 106 HOH HOH . D 4 HOH A 127 627 96 HOH HOH . D 4 HOH A 128 628 6 HOH HOH . D 4 HOH A 129 629 136 HOH HOH . D 4 HOH A 130 630 90 HOH HOH . D 4 HOH A 131 631 88 HOH HOH . D 4 HOH A 132 632 148 HOH HOH . D 4 HOH A 133 633 47 HOH HOH . D 4 HOH A 134 634 123 HOH HOH . D 4 HOH A 135 635 165 HOH HOH . D 4 HOH A 136 636 144 HOH HOH . D 4 HOH A 137 638 167 HOH HOH . D 4 HOH A 138 639 68 HOH HOH . D 4 HOH A 139 640 151 HOH HOH . D 4 HOH A 140 641 4 HOH HOH . D 4 HOH A 141 642 138 HOH HOH . D 4 HOH A 142 643 81 HOH HOH . D 4 HOH A 143 644 140 HOH HOH . D 4 HOH A 144 645 160 HOH HOH . D 4 HOH A 145 646 149 HOH HOH . D 4 HOH A 146 647 111 HOH HOH . D 4 HOH A 147 648 110 HOH HOH . D 4 HOH A 148 649 38 HOH HOH . D 4 HOH A 149 650 105 HOH HOH . D 4 HOH A 150 651 99 HOH HOH . D 4 HOH A 151 652 174 HOH HOH . D 4 HOH A 152 654 162 HOH HOH . D 4 HOH A 153 655 122 HOH HOH . D 4 HOH A 154 656 92 HOH HOH . D 4 HOH A 155 657 147 HOH HOH . D 4 HOH A 156 658 163 HOH HOH . D 4 HOH A 157 659 128 HOH HOH . D 4 HOH A 158 660 108 HOH HOH . D 4 HOH A 159 661 133 HOH HOH . D 4 HOH A 160 662 126 HOH HOH . D 4 HOH A 161 663 69 HOH HOH . D 4 HOH A 162 664 139 HOH HOH . D 4 HOH A 163 665 119 HOH HOH . D 4 HOH A 164 666 156 HOH HOH . D 4 HOH A 165 667 91 HOH HOH . D 4 HOH A 166 668 118 HOH HOH . D 4 HOH A 167 669 172 HOH HOH . D 4 HOH A 168 670 113 HOH HOH . D 4 HOH A 169 671 130 HOH HOH . D 4 HOH A 170 672 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XTP . . . B 2 -12.413 12.552 63.987 1 32.81 ? C10 XTP 401 A 1 HETATM 2 C C15 XTP . . . B 2 -12.205 15.029 70.938 1 34.86 ? C15 XTP 401 A 1 HETATM 3 C C17 XTP . . . B 2 -14.515 14.498 72.029 1 38.6 ? C17 XTP 401 A 1 HETATM 4 C C20 XTP . . . B 2 -11.609 11.705 69.369 1 39.88 ? C20 XTP 401 A 1 HETATM 5 C C22 XTP . . . B 2 -10.864 9.546 68.903 1 46.58 ? C22 XTP 401 A 1 HETATM 6 C C24 XTP . . . B 2 -9.679 8.624 66.848 1 51.96 ? C24 XTP 401 A 1 HETATM 7 C C26 XTP . . . B 2 -7.842 9.795 65.814 1 59.69 ? C26 XTP 401 A 1 HETATM 8 C C28 XTP . . . B 2 -8.912 10.726 67.754 1 55.17 ? C28 XTP 401 A 1 HETATM 9 C C02 XTP . . . B 2 -11.584 14.564 68.522 1 37.93 ? C02 XTP 401 A 1 HETATM 10 C C04 XTP . . . B 2 -11.745 15.596 66.325 1 36.08 ? C04 XTP 401 A 1 HETATM 11 C C05 XTP . . . B 2 -12.337 14.806 65.139 1 37.13 ? C05 XTP 401 A 1 HETATM 12 C C06 XTP . . . B 2 -11.758 13.344 65.1 1 33.37 ? C06 XTP 401 A 1 HETATM 13 C C07 XTP . . . B 2 -10.305 13.378 64.812 1 39.17 ? C07 XTP 401 A 1 HETATM 14 C C08 XTP . . . B 2 -10.081 12.163 63.922 1 43.19 ? C08 XTP 401 A 1 HETATM 15 C C12 XTP . . . B 2 -12.086 17.077 66.215 1 37.06 ? C12 XTP 401 A 1 HETATM 16 C C14 XTP . . . B 2 -12.284 14.025 69.778 1 33.02 ? C14 XTP 401 A 1 HETATM 17 C C16 XTP . . . B 2 -12.991 14.427 72.133 1 38.41 ? C16 XTP 401 A 1 HETATM 18 C C18 XTP . . . B 2 -13.774 15.427 73.015 1 40.03 ? C18 XTP 401 A 1 HETATM 19 C C23 XTP . . . B 2 -9.781 9.638 67.798 1 51.09 ? C23 XTP 401 A 1 HETATM 20 C C25 XTP . . . B 2 -8.708 8.704 65.856 1 57.57 ? C25 XTP 401 A 1 HETATM 21 C C27 XTP . . . B 2 -7.943 10.806 66.763 1 56.55 ? C27 XTP 401 A 1 HETATM 22 N N03 XTP . . . B 2 -12.333 15.069 67.554 1 34.81 ? N03 XTP 401 A 1 HETATM 23 N N09 XTP . . . B 2 -11.463 11.882 63.326 1 35.58 ? N09 XTP 401 A 1 HETATM 24 N N19 XTP . . . B 2 -11.641 12.78 70.163 1 35.09 ? N19 XTP 401 A 1 HETATM 25 O O01 XTP . . . B 2 -10.385 14.517 68.42 1 40.31 ? O01 XTP 401 A 1 HETATM 26 O O11 XTP . . . B 2 -13.594 12.506 63.73 1 36.91 ? O11 XTP 401 A 1 HETATM 27 O O13 XTP . . . B 2 -11.52 17.707 65.093 1 42.16 ? O13 XTP 401 A 1 HETATM 28 O O21 XTP . . . B 2 -10.838 10.696 69.736 1 40.37 ? O21 XTP 401 A 1 HETATM 29 O O29 XTP . . . B 2 -12.261 11.647 68.345 1 37.03 ? O29 XTP 401 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 29 #