data_7TIX # _model_server_result.job_id hbHHVZuD_FNQ-yVTpxW9jA _model_server_result.datetime_utc '2024-11-21 09:20:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7TIX # _exptl.entry_id 7TIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 535.61 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-{[(naphthalen-2-yl)methoxy]carbonyl}-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.62 _cell.angle_gamma 90 _cell.entry_id 7TIX _cell.length_a 96.729 _cell.length_b 81.462 _cell.length_c 54.566 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 B C12 Q56 . A Q56 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? metalc ? metalc1 A O ASN 221 A ASN 221 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc2 A OD1 ASN 221 A ASN 221 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 A O PHE 223 A PHE 223 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc4 A O ASP 263 A ASP 263 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc5 A OD1 ASP 263 A ASP 263 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 C MG MG . A MG 402 1_555 D O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'C25 H33 N3 O8 S' _chem_comp.formula_weight 535.61 _chem_comp.id Q56 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-{[(naphthalen-2-yl)methoxy]carbonyl}-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C10 Q56 sing 277 n n N9 C8 Q56 sing 278 n n O11 C10 Q56 doub 279 n n C10 C6 Q56 sing 280 n n C8 C7 Q56 sing 281 n n C5 C6 Q56 sing 282 n n C5 C4 Q56 sing 283 n n C6 C7 Q56 sing 284 n n O13 C12 Q56 sing 285 n n C29 C28 Q56 doub 286 n y C29 C30 Q56 sing 287 n y C28 C27 Q56 sing 288 n y C12 C4 Q56 sing 289 n n C31 C30 Q56 doub 290 n y C31 C32 Q56 sing 291 n y C4 N3 Q56 sing 292 n n C30 C25 Q56 sing 293 n y C27 C26 Q56 doub 294 n y C32 C23 Q56 doub 295 n y C25 C26 Q56 sing 296 n y C25 C24 Q56 doub 297 n y N3 C2 Q56 sing 298 n n C23 C24 Q56 sing 299 n y C23 C22 Q56 sing 300 n n O33 C20 Q56 doub 301 n n O1 C2 Q56 doub 302 n n C2 C14 Q56 sing 303 n n C22 O21 Q56 sing 304 n n C20 O21 Q56 sing 305 n n C20 N19 Q56 sing 306 n n C14 N19 Q56 sing 307 n n C14 C15 Q56 sing 308 n n C15 C16 Q56 sing 309 n n C16 C17 Q56 sing 310 n n C16 C18 Q56 sing 311 n n C16 H1 Q56 sing 312 n n C12 H2 Q56 sing 313 n n C14 H3 Q56 sing 314 n n C15 H4 Q56 sing 315 n n C15 H5 Q56 sing 316 n n C17 H6 Q56 sing 317 n n C17 H7 Q56 sing 318 n n C17 H8 Q56 sing 319 n n C18 H9 Q56 sing 320 n n C18 H10 Q56 sing 321 n n C18 H11 Q56 sing 322 n n C22 H12 Q56 sing 323 n n C22 H13 Q56 sing 324 n n C26 H14 Q56 sing 325 n n C27 H15 Q56 sing 326 n n C29 H16 Q56 sing 327 n n C24 H17 Q56 sing 328 n n C28 H18 Q56 sing 329 n n C31 H19 Q56 sing 330 n n C32 H20 Q56 sing 331 n n C4 H21 Q56 sing 332 n n C5 H22 Q56 sing 333 n n C5 H23 Q56 sing 334 n n C6 H24 Q56 sing 335 n n C7 H25 Q56 sing 336 n n C7 H26 Q56 sing 337 n n C8 H27 Q56 sing 338 n n C8 H28 Q56 sing 339 n n N19 H29 Q56 sing 340 n n N3 H30 Q56 sing 341 n n N9 H31 Q56 sing 342 n n C12 S1 Q56 sing 343 n n S1 O2 Q56 doub 344 n n S1 O4 Q56 doub 345 n n S1 O3 Q56 sing 346 n n O13 H32 Q56 sing 347 n n O3 H33 Q56 sing 348 n n # _atom_sites.entry_id 7TIX _atom_sites.fract_transf_matrix[1][1] 0.010338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005181 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q56 A 1 401 401 Q56 E56 . C 3 MG A 1 402 402 MG MG . D 4 HOH A 1 502 98 HOH HOH . D 4 HOH A 2 503 64 HOH HOH . D 4 HOH A 3 504 80 HOH HOH . D 4 HOH A 4 505 68 HOH HOH . D 4 HOH A 5 506 106 HOH HOH . D 4 HOH A 6 507 117 HOH HOH . D 4 HOH A 7 508 128 HOH HOH . D 4 HOH A 8 509 125 HOH HOH . D 4 HOH A 9 510 19 HOH HOH . D 4 HOH A 10 511 112 HOH HOH . D 4 HOH A 11 512 99 HOH HOH . D 4 HOH A 12 513 79 HOH HOH . D 4 HOH A 13 514 136 HOH HOH . D 4 HOH A 14 515 130 HOH HOH . D 4 HOH A 15 516 69 HOH HOH . D 4 HOH A 16 517 131 HOH HOH . D 4 HOH A 17 518 58 HOH HOH . D 4 HOH A 18 519 89 HOH HOH . D 4 HOH A 19 520 40 HOH HOH . D 4 HOH A 20 521 97 HOH HOH . D 4 HOH A 21 522 9 HOH HOH . D 4 HOH A 22 523 15 HOH HOH . D 4 HOH A 23 524 83 HOH HOH . D 4 HOH A 24 525 1 HOH HOH . D 4 HOH A 25 526 63 HOH HOH . D 4 HOH A 26 527 45 HOH HOH . D 4 HOH A 27 528 75 HOH HOH . D 4 HOH A 28 529 49 HOH HOH . D 4 HOH A 29 530 96 HOH HOH . D 4 HOH A 30 531 95 HOH HOH . D 4 HOH A 31 532 50 HOH HOH . D 4 HOH A 32 533 30 HOH HOH . D 4 HOH A 33 534 76 HOH HOH . D 4 HOH A 34 535 88 HOH HOH . D 4 HOH A 35 536 22 HOH HOH . D 4 HOH A 36 537 21 HOH HOH . D 4 HOH A 37 538 77 HOH HOH . D 4 HOH A 38 539 60 HOH HOH . D 4 HOH A 39 540 13 HOH HOH . D 4 HOH A 40 541 3 HOH HOH . D 4 HOH A 41 542 11 HOH HOH . D 4 HOH A 42 543 20 HOH HOH . D 4 HOH A 43 544 44 HOH HOH . D 4 HOH A 44 545 27 HOH HOH . D 4 HOH A 45 546 16 HOH HOH . D 4 HOH A 46 547 8 HOH HOH . D 4 HOH A 47 548 87 HOH HOH . D 4 HOH A 48 549 42 HOH HOH . D 4 HOH A 49 550 41 HOH HOH . D 4 HOH A 50 551 10 HOH HOH . D 4 HOH A 51 552 5 HOH HOH . D 4 HOH A 52 553 84 HOH HOH . D 4 HOH A 53 554 24 HOH HOH . D 4 HOH A 54 555 48 HOH HOH . D 4 HOH A 55 556 47 HOH HOH . D 4 HOH A 56 557 28 HOH HOH . D 4 HOH A 57 558 6 HOH HOH . D 4 HOH A 58 559 62 HOH HOH . D 4 HOH A 59 560 72 HOH HOH . D 4 HOH A 60 561 109 HOH HOH . D 4 HOH A 61 562 86 HOH HOH . D 4 HOH A 62 563 57 HOH HOH . D 4 HOH A 63 564 111 HOH HOH . D 4 HOH A 64 565 4 HOH HOH . D 4 HOH A 65 566 31 HOH HOH . D 4 HOH A 66 567 71 HOH HOH . D 4 HOH A 67 568 108 HOH HOH . D 4 HOH A 68 569 124 HOH HOH . D 4 HOH A 69 570 91 HOH HOH . D 4 HOH A 70 571 43 HOH HOH . D 4 HOH A 71 572 56 HOH HOH . D 4 HOH A 72 573 2 HOH HOH . D 4 HOH A 73 574 70 HOH HOH . D 4 HOH A 74 575 38 HOH HOH . D 4 HOH A 75 576 74 HOH HOH . D 4 HOH A 76 577 51 HOH HOH . D 4 HOH A 77 578 116 HOH HOH . D 4 HOH A 78 579 34 HOH HOH . D 4 HOH A 79 580 35 HOH HOH . D 4 HOH A 80 581 81 HOH HOH . D 4 HOH A 81 582 120 HOH HOH . D 4 HOH A 82 583 92 HOH HOH . D 4 HOH A 83 584 102 HOH HOH . D 4 HOH A 84 585 26 HOH HOH . D 4 HOH A 85 586 55 HOH HOH . D 4 HOH A 86 587 82 HOH HOH . D 4 HOH A 87 588 29 HOH HOH . D 4 HOH A 88 589 36 HOH HOH . D 4 HOH A 89 590 104 HOH HOH . D 4 HOH A 90 591 17 HOH HOH . D 4 HOH A 91 592 67 HOH HOH . D 4 HOH A 92 593 39 HOH HOH . D 4 HOH A 93 594 33 HOH HOH . D 4 HOH A 94 595 101 HOH HOH . D 4 HOH A 95 596 37 HOH HOH . D 4 HOH A 96 597 133 HOH HOH . D 4 HOH A 97 598 85 HOH HOH . D 4 HOH A 98 599 53 HOH HOH . D 4 HOH A 99 600 121 HOH HOH . D 4 HOH A 100 601 25 HOH HOH . D 4 HOH A 101 602 114 HOH HOH . D 4 HOH A 102 603 12 HOH HOH . D 4 HOH A 103 604 14 HOH HOH . D 4 HOH A 104 605 23 HOH HOH . D 4 HOH A 105 606 105 HOH HOH . D 4 HOH A 106 607 7 HOH HOH . D 4 HOH A 107 608 119 HOH HOH . D 4 HOH A 108 609 32 HOH HOH . D 4 HOH A 109 610 65 HOH HOH . D 4 HOH A 110 611 94 HOH HOH . D 4 HOH A 111 612 107 HOH HOH . D 4 HOH A 112 613 59 HOH HOH . D 4 HOH A 113 614 113 HOH HOH . D 4 HOH A 114 615 132 HOH HOH . D 4 HOH A 115 616 137 HOH HOH . D 4 HOH A 116 617 18 HOH HOH . D 4 HOH A 117 618 90 HOH HOH . D 4 HOH A 118 619 54 HOH HOH . D 4 HOH A 119 620 127 HOH HOH . D 4 HOH A 120 621 123 HOH HOH . D 4 HOH A 121 622 66 HOH HOH . D 4 HOH A 122 623 138 HOH HOH . D 4 HOH A 123 624 100 HOH HOH . D 4 HOH A 124 626 135 HOH HOH . D 4 HOH A 125 627 73 HOH HOH . D 4 HOH A 126 628 118 HOH HOH . D 4 HOH A 127 629 103 HOH HOH . D 4 HOH A 128 630 134 HOH HOH . D 4 HOH A 129 631 122 HOH HOH . D 4 HOH A 130 632 115 HOH HOH . D 4 HOH A 131 633 52 HOH HOH . D 4 HOH A 132 634 126 HOH HOH . D 4 HOH A 133 635 129 HOH HOH . D 4 HOH A 134 636 78 HOH HOH . D 4 HOH A 135 637 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 Q56 . . . B 2 6.408 1.311 25.592 1 48.18 ? C16 Q56 401 A 1 HETATM 2 C C12 Q56 . . . B 2 7.9 3.1 19.837 1 42.09 ? C12 Q56 401 A 1 HETATM 3 C C14 Q56 . . . B 2 7.448 0.197 23.525 1 35.97 ? C14 Q56 401 A 1 HETATM 4 C C15 Q56 . . . B 2 7.635 1.185 24.672 1 44.94 ? C15 Q56 401 A 1 HETATM 5 C C17 Q56 . . . B 2 5.556 0.053 25.724 1 47.1 ? C17 Q56 401 A 1 HETATM 6 C C18 Q56 . . . B 2 6.855 1.777 26.974 1 39.3 ? C18 Q56 401 A 1 HETATM 7 C C22 Q56 . . . B 2 8.947 -4.286 22.803 1 42.6 ? C22 Q56 401 A 1 HETATM 8 C C23 Q56 . . . B 2 10.125 -4.086 21.84 1 44.38 ? C23 Q56 401 A 1 HETATM 9 C C25 Q56 . . . B 2 11.997 -2.793 21.02 1 45.36 ? C25 Q56 401 A 1 HETATM 10 C C26 Q56 . . . B 2 12.804 -1.659 21.082 1 47.58 ? C26 Q56 401 A 1 HETATM 11 C C27 Q56 . . . B 2 13.864 -1.504 20.188 1 51 ? C27 Q56 401 A 1 HETATM 12 C C29 Q56 . . . B 2 13.307 -3.616 19.16 1 46.38 ? C29 Q56 401 A 1 HETATM 13 C C10 Q56 . . . B 2 7.767 -1.435 17.725 1 41.57 ? C10 Q56 401 A 1 HETATM 14 C C2 Q56 . . . B 2 8.22 0.712 22.299 1 42.84 ? C2 Q56 401 A 1 HETATM 15 C C20 Q56 . . . B 2 8.072 -2.157 23.157 1 46.85 ? C20 Q56 401 A 1 HETATM 16 C C24 Q56 . . . B 2 10.938 -2.949 21.906 1 42.41 ? C24 Q56 401 A 1 HETATM 17 C C28 Q56 . . . B 2 14.12 -2.482 19.228 1 47.03 ? C28 Q56 401 A 1 HETATM 18 C C30 Q56 . . . B 2 12.247 -3.769 20.055 1 50.56 ? C30 Q56 401 A 1 HETATM 19 C C31 Q56 . . . B 2 11.443 -4.902 19.99 1 49.43 ? C31 Q56 401 A 1 HETATM 20 C C32 Q56 . . . B 2 10.387 -5.062 20.884 1 48.44 ? C32 Q56 401 A 1 HETATM 21 C C4 Q56 . . . B 2 8.214 1.614 20.045 1 35.31 ? C4 Q56 401 A 1 HETATM 22 C C5 Q56 . . . B 2 7.717 0.79 18.848 1 35.7 ? C5 Q56 401 A 1 HETATM 23 C C6 Q56 . . . B 2 8.202 -0.7 18.939 1 36.67 ? C6 Q56 401 A 1 HETATM 24 C C7 Q56 . . . B 2 9.705 -0.757 18.992 1 39.73 ? C7 Q56 401 A 1 HETATM 25 C C8 Q56 . . . B 2 10.034 -1.999 18.097 1 39.85 ? C8 Q56 401 A 1 HETATM 26 N N19 Q56 . . . B 2 7.988 -1.083 23.949 1 39.19 ? N19 Q56 401 A 1 HETATM 27 N N3 Q56 . . . B 2 7.535 1.135 21.234 1 36.23 ? N3 Q56 401 A 1 HETATM 28 N N9 Q56 . . . B 2 8.774 -2.161 17.236 1 40.04 ? N9 Q56 401 A 1 HETATM 29 O O1 Q56 . . . B 2 9.426 0.752 22.291 1 38.84 ? O1 Q56 401 A 1 HETATM 30 O O11 Q56 . . . B 2 6.669 -1.379 17.255 1 37.29 ? O11 Q56 401 A 1 HETATM 31 O O13 Q56 . . . B 2 8.47 3.717 18.968 1 48.48 ? O13 Q56 401 A 1 HETATM 32 O O21 Q56 . . . B 2 8.751 -3.18 23.655 1 42.94 ? O21 Q56 401 A 1 HETATM 33 O O33 Q56 . . . B 2 7.579 -2.19 22.054 1 39.52 ? O33 Q56 401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #