data_7TJX # _model_server_result.job_id ORAhnhamA7L71iCF1KNKJQ _model_server_result.datetime_utc '2024-11-27 19:36:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tjx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":600}' # _entry.id 7TJX # _exptl.entry_id 7TJX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TJX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 178 A THR 178 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 H O3G ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 H O2B ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc4 H O3B ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc5 B OG1 THR 178 B THR 178 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc6 J O1G ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc7 J O2B ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc8 J O3B ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc9 C OG1 THR 178 C THR 178 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 L O1G ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc11 L O2G ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc12 L O2B ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc13 L O3B ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc14 D OG1 THR 164 D THR 164 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc15 D OE1 GLU 193 D GLU 193 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc16 N O1B ADP . D ADP 600 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc17 O MG MG . D MG 601 1_555 P O2 PO4 . D PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc18 F OG1 THR 164 F THR 164 1_555 R MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc19 Q O1G ATP . F ATP 600 1_555 R MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc20 Q O2B ATP . F ATP 600 1_555 R MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc21 Q O3B ATP . F ATP 600 1_555 R MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7TJX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 ATP A 1 600 600 ATP ATP . I 5 MG A 1 601 601 MG MG . J 4 ATP B 1 600 600 ATP ATP . K 5 MG B 1 601 601 MG MG . L 4 ATP C 1 600 600 ATP ATP . M 5 MG C 1 601 601 MG MG . N 6 ADP D 1 600 600 ADP ADP . O 5 MG D 1 601 601 MG MG . P 7 PO4 D 1 602 602 PO4 PO4 . Q 4 ATP F 1 600 600 ATP ATP . R 5 MG F 1 601 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . N 6 145.579 178.957 136.277 1 77.59 ? PB ADP 600 D 1 HETATM 2 O O1B ADP . . . N 6 145.316 180.162 135.405 1 77.59 ? O1B ADP 600 D 1 HETATM 3 O O2B ADP . . . N 6 146.103 179.288 137.652 1 77.59 ? O2B ADP 600 D 1 HETATM 4 O O3B ADP . . . N 6 146.3 177.824 135.589 1 77.59 ? O3B ADP 600 D 1 HETATM 5 P PA ADP . . . N 6 142.908 179.322 136.978 1 77.59 ? PA ADP 600 D 1 HETATM 6 O O1A ADP . . . N 6 141.767 179.011 136.042 1 77.59 ? O1A ADP 600 D 1 HETATM 7 O O2A ADP . . . N 6 143.449 180.728 137.07 1 77.59 ? O2A ADP 600 D 1 HETATM 8 O O3A ADP . . . N 6 144.126 178.346 136.589 1 77.59 ? O3A ADP 600 D 1 HETATM 9 O O5' ADP . . . N 6 142.527 178.832 138.461 1 77.59 ? O5' ADP 600 D 1 HETATM 10 C C5' ADP . . . N 6 142.213 177.466 138.702 1 77.59 ? C5' ADP 600 D 1 HETATM 11 C C4' ADP . . . N 6 141.421 177.342 139.995 1 77.59 ? C4' ADP 600 D 1 HETATM 12 O O4' ADP . . . N 6 141.885 178.275 140.974 1 77.59 ? O4' ADP 600 D 1 HETATM 13 C C3' ADP . . . N 6 139.949 177.64 139.771 1 77.59 ? C3' ADP 600 D 1 HETATM 14 O O3' ADP . . . N 6 139.186 176.431 139.799 1 77.59 ? O3' ADP 600 D 1 HETATM 15 C C2' ADP . . . N 6 139.551 178.565 140.904 1 77.59 ? C2' ADP 600 D 1 HETATM 16 O O2' ADP . . . N 6 138.444 178.049 141.647 1 77.59 ? O2' ADP 600 D 1 HETATM 17 C C1' ADP . . . N 6 140.781 178.675 141.787 1 77.59 ? C1' ADP 600 D 1 HETATM 18 N N9 ADP . . . N 6 140.915 180.062 142.299 1 77.59 ? N9 ADP 600 D 1 HETATM 19 C C8 ADP . . . N 6 141.677 181.046 141.782 1 77.59 ? C8 ADP 600 D 1 HETATM 20 N N7 ADP . . . N 6 141.541 182.182 142.515 1 77.59 ? N7 ADP 600 D 1 HETATM 21 C C5 ADP . . . N 6 140.682 181.929 143.515 1 77.59 ? C5 ADP 600 D 1 HETATM 22 C C6 ADP . . . N 6 140.102 182.686 144.65 1 77.59 ? C6 ADP 600 D 1 HETATM 23 N N6 ADP . . . N 6 140.435 183.985 144.856 1 77.59 ? N6 ADP 600 D 1 HETATM 24 N N1 ADP . . . N 6 139.236 182.038 145.463 1 77.59 ? N1 ADP 600 D 1 HETATM 25 C C2 ADP . . . N 6 138.902 180.747 145.269 1 77.59 ? C2 ADP 600 D 1 HETATM 26 N N3 ADP . . . N 6 139.398 180.006 144.261 1 77.59 ? N3 ADP 600 D 1 HETATM 27 C C4 ADP . . . N 6 140.273 180.529 143.369 1 77.59 ? C4 ADP 600 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #