data_7TLE # _model_server_result.job_id ozuov1P7jzfhwsyXBqfqvQ _model_server_result.datetime_utc '2024-11-22 22:11:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7TLE # _exptl.entry_id 7TLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.065 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4R)-1-[7-(8-chloronaphthalen-1-yl)-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-3-hydroxypiperidine-4-carbaldehyde _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TLE _cell.length_a 39.78 _cell.length_b 50.66 _cell.length_c 89.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 12 A SER 12 1_555 C C01 I6T . A I6T 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 B MG MG . A MG 201 1_555 D O2B GDP . A GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc3 B MG MG . A MG 201 1_555 F O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 B MG MG . A MG 201 1_555 F O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 B MG MG . A MG 201 1_555 F O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 B MG MG . A MG 201 1_555 F O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? # _chem_comp.formula 'C29 H34 Cl N5 O3' _chem_comp.formula_weight 536.065 _chem_comp.id I6T _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4R)-1-[7-(8-chloronaphthalen-1-yl)-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-3-hydroxypiperidine-4-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1R,6R)-3-[7-(8-chloronaphthalen-1-yl)-2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]-8-oxa-3-azabicyclo[4.2.0]octan-7-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 I6T doub 197 n y N3 C2 I6T sing 198 n y C4 N5 I6T sing 199 n y C4 O11 I6T sing 200 n n C2 C1 I6T doub 201 n y C2 C10 I6T sing 202 n n C1 C6 I6T sing 203 n y C1 C7 I6T sing 204 n n C6 N12 I6T sing 205 n n C6 N5 I6T doub 206 n y C8 N9 I6T sing 207 n n C01 C02 I6T sing 208 n n C01 O02 I6T doub 209 n n C02 C14 I6T sing 210 n n C02 C16 I6T sing 211 n n C10 N9 I6T sing 212 n n C13 C14 I6T sing 213 n n C13 N12 I6T sing 214 n n C16 C17 I6T sing 215 n n C16 O01 I6T sing 216 n n C17 N12 I6T sing 217 n n C19 C20 I6T sing 218 n n C19 O11 I6T sing 219 n n C20 C24 I6T sing 220 n n C20 N21 I6T sing 221 n n C22 C23 I6T sing 222 n n C22 N21 I6T sing 223 n n C23 C24 I6T sing 224 n n C25 N21 I6T sing 225 n n C26 C27 I6T doub 226 n y C26 C31 I6T sing 227 n y C26 N9 I6T sing 228 n n C27 C28 I6T sing 229 n y C28 C29 I6T doub 230 n y C29 C30 I6T sing 231 n y C30 C31 I6T doub 232 n y C30 C32 I6T sing 233 n y C31 C35 I6T sing 234 n y C32 C33 I6T doub 235 n y C33 C34 I6T sing 236 n y C34 C35 I6T doub 237 n y C35 CL1 I6T sing 238 n n C7 H1 I6T sing 239 n n C7 H2 I6T sing 240 n n C8 H4 I6T sing 241 n n C8 H5 I6T sing 242 n n C01 H7 I6T sing 243 n n C02 H8 I6T sing 244 n n C10 H9 I6T sing 245 n n C10 H10 I6T sing 246 n n C13 H11 I6T sing 247 n n C13 H12 I6T sing 248 n n C14 H13 I6T sing 249 n n C14 H14 I6T sing 250 n n C16 H15 I6T sing 251 n n C17 H16 I6T sing 252 n n C17 H17 I6T sing 253 n n C19 H18 I6T sing 254 n n C19 H19 I6T sing 255 n n C20 H20 I6T sing 256 n n C22 H21 I6T sing 257 n n C22 H22 I6T sing 258 n n C23 H23 I6T sing 259 n n C23 H24 I6T sing 260 n n C24 H25 I6T sing 261 n n C24 H26 I6T sing 262 n n C25 H27 I6T sing 263 n n C25 H28 I6T sing 264 n n C25 H29 I6T sing 265 n n C27 H30 I6T sing 266 n n C28 H31 I6T sing 267 n n C29 H32 I6T sing 268 n n C32 H33 I6T sing 269 n n C33 H34 I6T sing 270 n n C34 H35 I6T sing 271 n n O01 H37 I6T sing 272 n n C8 C7 I6T sing 273 n n # _atom_sites.entry_id 7TLE _atom_sites.fract_transf_matrix[1][1] 0.025138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 205 MG MG . C 3 I6T A 1 202 206 I6T ZZ2 . D 4 GDP A 1 203 207 GDP GDP . E 5 SO4 A 1 204 1 SO4 SO4 . F 6 HOH A 1 301 78 HOH HOH . F 6 HOH A 2 302 88 HOH HOH . F 6 HOH A 3 303 37 HOH HOH . F 6 HOH A 4 304 68 HOH HOH . F 6 HOH A 5 305 21 HOH HOH . F 6 HOH A 6 306 30 HOH HOH . F 6 HOH A 7 307 7 HOH HOH . F 6 HOH A 8 308 64 HOH HOH . F 6 HOH A 9 309 3 HOH HOH . F 6 HOH A 10 310 80 HOH HOH . F 6 HOH A 11 311 16 HOH HOH . F 6 HOH A 12 312 5 HOH HOH . F 6 HOH A 13 313 86 HOH HOH . F 6 HOH A 14 314 57 HOH HOH . F 6 HOH A 15 315 41 HOH HOH . F 6 HOH A 16 316 18 HOH HOH . F 6 HOH A 17 317 6 HOH HOH . F 6 HOH A 18 318 11 HOH HOH . F 6 HOH A 19 319 28 HOH HOH . F 6 HOH A 20 320 8 HOH HOH . F 6 HOH A 21 321 26 HOH HOH . F 6 HOH A 22 322 40 HOH HOH . F 6 HOH A 23 323 22 HOH HOH . F 6 HOH A 24 324 32 HOH HOH . F 6 HOH A 25 325 49 HOH HOH . F 6 HOH A 26 326 31 HOH HOH . F 6 HOH A 27 327 43 HOH HOH . F 6 HOH A 28 328 59 HOH HOH . F 6 HOH A 29 329 13 HOH HOH . F 6 HOH A 30 330 34 HOH HOH . F 6 HOH A 31 331 52 HOH HOH . F 6 HOH A 32 332 44 HOH HOH . F 6 HOH A 33 333 51 HOH HOH . F 6 HOH A 34 334 72 HOH HOH . F 6 HOH A 35 335 55 HOH HOH . F 6 HOH A 36 336 50 HOH HOH . F 6 HOH A 37 337 42 HOH HOH . F 6 HOH A 38 338 33 HOH HOH . F 6 HOH A 39 339 1 HOH HOH . F 6 HOH A 40 340 25 HOH HOH . F 6 HOH A 41 341 23 HOH HOH . F 6 HOH A 42 342 9 HOH HOH . F 6 HOH A 43 343 27 HOH HOH . F 6 HOH A 44 344 4 HOH HOH . F 6 HOH A 45 345 58 HOH HOH . F 6 HOH A 46 346 35 HOH HOH . F 6 HOH A 47 347 17 HOH HOH . F 6 HOH A 48 348 77 HOH HOH . F 6 HOH A 49 349 2 HOH HOH . F 6 HOH A 50 350 46 HOH HOH . F 6 HOH A 51 351 39 HOH HOH . F 6 HOH A 52 352 85 HOH HOH . F 6 HOH A 53 353 20 HOH HOH . F 6 HOH A 54 354 45 HOH HOH . F 6 HOH A 55 355 19 HOH HOH . F 6 HOH A 56 356 56 HOH HOH . F 6 HOH A 57 357 15 HOH HOH . F 6 HOH A 58 358 12 HOH HOH . F 6 HOH A 59 359 66 HOH HOH . F 6 HOH A 60 360 81 HOH HOH . F 6 HOH A 61 361 14 HOH HOH . F 6 HOH A 62 362 47 HOH HOH . F 6 HOH A 63 363 10 HOH HOH . F 6 HOH A 64 364 24 HOH HOH . F 6 HOH A 65 365 29 HOH HOH . F 6 HOH A 66 366 83 HOH HOH . F 6 HOH A 67 367 62 HOH HOH . F 6 HOH A 68 368 69 HOH HOH . F 6 HOH A 69 369 48 HOH HOH . F 6 HOH A 70 370 61 HOH HOH . F 6 HOH A 71 371 87 HOH HOH . F 6 HOH A 72 372 65 HOH HOH . F 6 HOH A 73 373 89 HOH HOH . F 6 HOH A 74 374 60 HOH HOH . F 6 HOH A 75 375 75 HOH HOH . F 6 HOH A 76 376 79 HOH HOH . F 6 HOH A 77 377 53 HOH HOH . F 6 HOH A 78 378 67 HOH HOH . F 6 HOH A 79 379 71 HOH HOH . F 6 HOH A 80 380 54 HOH HOH . F 6 HOH A 81 381 84 HOH HOH . F 6 HOH A 82 382 63 HOH HOH . F 6 HOH A 83 383 74 HOH HOH . F 6 HOH A 84 384 70 HOH HOH . F 6 HOH A 85 385 73 HOH HOH . F 6 HOH A 86 386 76 HOH HOH . F 6 HOH A 87 387 82 HOH HOH . F 6 HOH A 88 388 36 HOH HOH . F 6 HOH A 89 389 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 I6T . . . C 3 23.043 5.545 -22.435 1 22.96 ? N3 I6T 202 A 1 HETATM 2 C C4 I6T . . . C 3 24.249 5.428 -22.073 1 23.66 ? C4 I6T 202 A 1 HETATM 3 C C2 I6T . . . C 3 22.248 4.401 -23.047 1 21.98 ? C2 I6T 202 A 1 HETATM 4 C C1 I6T . . . C 3 22.974 3.262 -23.188 1 21.67 ? C1 I6T 202 A 1 HETATM 5 C C6 I6T . . . C 3 24.444 3.408 -22.672 1 23.13 ? C6 I6T 202 A 1 HETATM 6 C C7 I6T . . . C 3 22.277 1.973 -23.85 1 25.7 ? C7 I6T 202 A 1 HETATM 7 C C8 I6T . . . C 3 21.113 2.54 -24.96 1 28.01 ? C8 I6T 202 A 1 HETATM 8 C C01 I6T . . . C 3 27.482 0.144 -19.716 1 24.73 ? C01 I6T 202 A 1 HETATM 9 C C02 I6T . . . C 3 26.883 0.629 -21.033 1 21.46 ? C02 I6T 202 A 1 HETATM 10 C C10 I6T . . . C 3 20.987 4.409 -23.461 1 20.82 ? C10 I6T 202 A 1 HETATM 11 C C13 I6T . . . C 3 26.756 2.438 -22.724 1 24.18 ? C13 I6T 202 A 1 HETATM 12 C C14 I6T . . . C 3 27.35 2.049 -21.368 1 24.55 ? C14 I6T 202 A 1 HETATM 13 C C16 I6T . . . C 3 25.362 0.571 -20.935 1 24.27 ? C16 I6T 202 A 1 HETATM 14 C C17 I6T . . . C 3 24.836 0.916 -22.316 1 23.31 ? C17 I6T 202 A 1 HETATM 15 C C19 I6T . . . C 3 26.172 6.543 -21.154 1 20.59 ? C19 I6T 202 A 1 HETATM 16 C C20 I6T . . . C 3 26.606 7.972 -20.563 1 24.13 ? C20 I6T 202 A 1 HETATM 17 C C22 I6T . . . C 3 26.091 10.168 -20.874 1 24.85 ? C22 I6T 202 A 1 HETATM 18 C C23 I6T . . . C 3 25.186 9.601 -19.711 1 24.17 ? C23 I6T 202 A 1 HETATM 19 C C24 I6T . . . C 3 25.683 8.312 -19.466 1 22.24 ? C24 I6T 202 A 1 HETATM 20 C C25 I6T . . . C 3 27.592 9.17 -22.093 1 27.02 ? C25 I6T 202 A 1 HETATM 21 C C26 I6T . . . C 3 18.941 3.626 -24.299 1 22.88 ? C26 I6T 202 A 1 HETATM 22 C C27 I6T . . . C 3 18.711 3.921 -25.664 1 24.78 ? C27 I6T 202 A 1 HETATM 23 C C28 I6T . . . C 3 17.365 4.251 -26.092 1 25.96 ? C28 I6T 202 A 1 HETATM 24 C C29 I6T . . . C 3 16.305 4.269 -25.149 1 26.89 ? C29 I6T 202 A 1 HETATM 25 C C30 I6T . . . C 3 16.569 3.976 -23.849 1 20.06 ? C30 I6T 202 A 1 HETATM 26 C C31 I6T . . . C 3 17.956 3.645 -23.365 1 21.6 ? C31 I6T 202 A 1 HETATM 27 C C32 I6T . . . C 3 15.492 3.989 -22.808 1 23.92 ? C32 I6T 202 A 1 HETATM 28 C C33 I6T . . . C 3 15.791 3.71 -21.563 1 23.15 ? C33 I6T 202 A 1 HETATM 29 C C34 I6T . . . C 3 16.93 3.463 -21.296 1 25.64 ? C34 I6T 202 A 1 HETATM 30 C C35 I6T . . . C 3 17.99 3.375 -21.954 1 27.8 ? C35 I6T 202 A 1 HETATM 31 N N12 I6T . . . C 3 25.318 2.226 -22.767 1 22.14 ? N12 I6T 202 A 1 HETATM 32 N N21 I6T . . . C 3 26.51 8.973 -21.52 1 30.84 ? N21 I6T 202 A 1 HETATM 33 N N5 I6T . . . C 3 24.908 4.448 -22.176 1 25.09 ? N5 I6T 202 A 1 HETATM 34 N N9 I6T . . . C 3 20.305 3.357 -23.96 1 20.09 ? N9 I6T 202 A 1 HETATM 35 O O01 I6T . . . C 3 24.844 1.509 -20.014 1 22.06 ? O01 I6T 202 A 1 HETATM 36 O O02 I6T . . . C 3 26.845 -0.626 -19.067 1 23.72 ? O02 I6T 202 A 1 HETATM 37 O O11 I6T . . . C 3 24.814 6.585 -21.508 1 21.01 ? O11 I6T 202 A 1 HETATM 38 CL CL1 I6T . . . C 3 19.498 2.883 -21.137 1 28.59 ? CL1 I6T 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #