data_7TM1 # _model_server_result.job_id PSWM6U-1mrvyYMONxCuvZQ _model_server_result.datetime_utc '2024-11-26 16:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7TM1 # _exptl.entry_id 7TM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.416 _cell.angle_gamma 90 _cell.entry_id 7TM1 _cell.length_a 78.749 _cell.length_b 11.566 _cell.length_c 27.904 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,E 2 1 C,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C02 I6W 1 A I6W 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 A C LEU 2 A LEU 2 1_555 A N AIB 3 A AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C AIB 3 A AIB 3 1_555 A N MET 4 A MET 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MET 4 A MET 4 1_555 A N AIB 5 A AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C AIB 5 A AIB 5 1_555 A N LEU 6 A LEU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C LEU 6 A LEU 6 1_555 A N AIB 7 A AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C AIB 7 A AIB 7 1_555 A N GLN 8 A GLN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 A C GLN 8 A GLN 8 1_555 A N AIB 9 A AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C AIB 9 A AIB 9 1_555 A N LEU 10 A LEU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C LEU 10 A LEU 10 1_555 A N15 I77 11 A I77 11 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.425 ? covale ? covale11 A C LEU 10 A LEU 10 1_555 A N15 I77 11 A I77 11 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.426 ? covale ? covale12 A C LEU 10 A LEU 10 1_555 A N15 I77 11 A I77 11 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.427 ? covale ? covale13 A N01 I77 11 A I77 11 1_555 B N07 I6W 1 B I6W 1 2_565 ? B ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale14 B C02 I6W 1 B I6W 1 1_555 B N LEU 2 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale15 B C LEU 2 B LEU 2 1_555 B N AIB 3 B AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C AIB 3 B AIB 3 1_555 B N MET 4 B MET 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale17 B C MET 4 B MET 4 1_555 B N AIB 5 B AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C AIB 5 B AIB 5 1_555 B N LEU 6 B LEU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 B C LEU 6 B LEU 6 1_555 B N AIB 7 B AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C AIB 7 B AIB 7 1_555 B N GLN 8 B GLN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 B C GLN 8 B GLN 8 1_555 B N AIB 9 B AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale22 B C AIB 9 B AIB 9 1_555 B N LEU 10 B LEU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 B C LEU 10 B LEU 10 1_555 B N15 I77 11 B I77 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale24 C C02 I6W 1 C I6W 1 1_555 C N LEU 2 C LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale25 C N07 I6W 1 C I6W 1 1_555 C N01 I77 11 C I77 11 4_546 ? ? ? ? B ? ? ? ? ? ? ? 1.361 ? covale ? covale26 C C LEU 2 C LEU 2 1_555 C N AIB 3 C AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale27 C C AIB 3 C AIB 3 1_555 C N MET 4 C MET 4 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale28 C C AIB 3 C AIB 3 1_555 C N MET 4 C MET 4 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale29 C C MET 4 C MET 4 1_555 C N AIB 5 C AIB 5 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 C C MET 4 C MET 4 1_555 C N AIB 5 C AIB 5 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale31 C C AIB 5 C AIB 5 1_555 C N LEU 6 C LEU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale32 C C LEU 6 C LEU 6 1_555 C N AIB 7 C AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale33 C C AIB 7 C AIB 7 1_555 C N GLN 8 C GLN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale34 C C GLN 8 C GLN 8 1_555 C N AIB 9 C AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale35 C C AIB 9 C AIB 9 1_555 C N LEU 10 C LEU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale36 C C LEU 10 C LEU 10 1_555 C N15 I77 11 C I77 11 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.428 ? covale ? covale37 C C LEU 10 C LEU 10 1_555 C N15 I77 11 C I77 11 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.42 ? # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 16 n n C1 C2 CCN sing 17 n n C2 H21 CCN sing 18 n n C2 H22 CCN sing 19 n n C2 H23 CCN sing 20 n n # _atom_sites.entry_id 7TM1 _atom_sites.fract_transf_matrix[1][1] 0.012699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003983 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.08646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.037559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CCN A 1 201 1 CCN ACN . E 3 HOH B 1 201 3 HOH HOH . F 3 HOH C 1 201 2 HOH HOH . F 3 HOH C 2 202 1 HOH HOH . F 3 HOH C 3 203 4 HOH HOH . F 3 HOH C 4 204 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . D 2 14.404 -4.324 15.721 1 13.61 ? N CCN 201 A 1 HETATM 2 C C1 CCN . . . D 2 13.768 -4.427 14.802 1 11.32 ? C1 CCN 201 A 1 HETATM 3 C C2 CCN . . . D 2 12.918 -4.528 13.55 1 13.8 ? C2 CCN 201 A 1 HETATM 4 H H21 CCN . . . D 2 13.533 -4.335 12.679 1 16.58 ? H21 CCN 201 A 1 HETATM 5 H H22 CCN . . . D 2 12.118 -3.799 13.596 1 16.58 ? H22 CCN 201 A 1 HETATM 6 H H23 CCN . . . D 2 12.495 -5.523 13.479 1 16.58 ? H23 CCN 201 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #