data_7TML # _model_server_result.job_id 5OnYmp_DIX5uaDSNFzDvng _model_server_result.datetime_utc '2025-03-11 09:10:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7TML # _exptl.entry_id 7TML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.008 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description iodobenzene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.651 _cell.angle_gamma 90 _cell.entry_id 7TML _cell.length_a 13.76 _cell.length_b 13.394 _cell.length_c 27.732 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TML _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C02 I6W 1 A I6W 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A C LEU 2 A LEU 2 1_555 A N AIB 3 A AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C AIB 3 A AIB 3 1_555 A N ALA 4 A ALA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ALA 4 A ALA 4 1_555 A N AIB 5 A AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C AIB 5 A AIB 5 1_555 A N LEU 6 A LEU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C LEU 6 A LEU 6 1_555 A N AIB 7 A AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C AIB 7 A AIB 7 1_555 A N GLN 8 A GLN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C GLN 8 A GLN 8 1_555 A N AIB 9 A AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C AIB 9 A AIB 9 1_555 A N LEU 10 A LEU 10 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C AIB 9 A AIB 9 1_555 A N LEU 10 A LEU 10 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C LEU 10 A LEU 10 1_555 A N15 I77 11 A I77 11 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.427 ? covale ? covale12 A C LEU 10 A LEU 10 1_555 A N15 I77 11 A I77 11 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'C6 H5 I' _chem_comp.formula_weight 204.008 _chem_comp.id PIH _chem_comp.mon_nstd_flag . _chem_comp.name iodobenzene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PIH doub 138 n y C1 C6 PIH sing 139 n y C1 H1 PIH sing 140 n n C2 C3 PIH sing 141 n y C2 H2 PIH sing 142 n n C3 C4 PIH doub 143 n y C3 H3 PIH sing 144 n n C4 C5 PIH sing 145 n y C4 H4 PIH sing 146 n n C5 C6 PIH doub 147 n y C5 H5 PIH sing 148 n n C6 I6 PIH sing 149 n n # _atom_sites.entry_id 7TML _atom_sites.fract_transf_matrix[1][1] 0.072674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009763 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.07466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.036383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PIH A 1 201 1 PIH IOB . C 3 CCN A 1 202 1 CCN ACN . D 4 HOH A 1 301 4 HOH HOH . D 4 HOH A 2 302 5 HOH HOH . D 4 HOH A 3 303 7 HOH HOH . D 4 HOH A 4 304 6 HOH HOH . D 4 HOH A 5 305 1 HOH HOH . D 4 HOH A 6 306 2 HOH HOH . D 4 HOH A 7 307 3 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PIH . A . B 2 -7.694 -3.125 -6.625 0.13 6.88 ? C1 PIH 201 A 1 HETATM 2 C C1 PIH . B . B 2 -9.302 -2.101 -6.204 0.54 5.63 ? C1 PIH 201 A 1 HETATM 3 C C2 PIH . A . B 2 -7.181 -3.514 -7.854 0.13 6.64 ? C2 PIH 201 A 1 HETATM 4 C C2 PIH . B . B 2 -9.929 -1.744 -5.021 0.54 4.89 ? C2 PIH 201 A 1 HETATM 5 C C3 PIH . A . B 2 -7.838 -3.168 -9.022 0.13 6.76 ? C3 PIH 201 A 1 HETATM 6 C C3 PIH . B . B 2 -9.271 -1.929 -3.816 0.54 4.35 ? C3 PIH 201 A 1 HETATM 7 C C4 PIH . A . B 2 -9.013 -2.439 -8.96 0.13 7.08 ? C4 PIH 201 A 1 HETATM 8 C C4 PIH . B . B 2 -7.992 -2.453 -3.796 0.54 4.51 ? C4 PIH 201 A 1 HETATM 9 C C5 PIH . A . B 2 -9.524 -2.055 -7.73 0.13 7.35 ? C5 PIH 201 A 1 HETATM 10 C C5 PIH . B . B 2 -7.375 -2.804 -4.976 0.54 4.72 ? C5 PIH 201 A 1 HETATM 11 C C6 PIH . A . B 2 -8.868 -2.391 -6.559 0.13 7.44 ? C6 PIH 201 A 1 HETATM 12 C C6 PIH . B . B 2 -8.028 -2.628 -6.179 0.54 5.66 ? C6 PIH 201 A 1 HETATM 13 I I6 PIH . A . B 2 -9.665 -1.783 -4.696 0.13 8.16 ? I6 PIH 201 A 1 HETATM 14 I I6 PIH . B . B 2 -7.071 -3.144 -7.975 0.54 7.35 ? I6 PIH 201 A 1 HETATM 15 H H1 PIH . A . B 2 -7.175 -3.396 -5.714 0.13 8.27 ? H1 PIH 201 A 1 HETATM 16 H H1 PIH . B . B 2 -9.814 -1.967 -7.149 0.54 6.76 ? H1 PIH 201 A 1 HETATM 17 H H2 PIH . A . B 2 -6.265 -4.089 -7.9 0.13 7.97 ? H2 PIH 201 A 1 HETATM 18 H H2 PIH . B . B 2 -10.926 -1.323 -5.039 0.54 5.88 ? H2 PIH 201 A 1 HETATM 19 H H3 PIH . A . B 2 -7.435 -3.468 -9.981 0.13 8.12 ? H3 PIH 201 A 1 HETATM 20 H H3 PIH . B . B 2 -9.761 -1.663 -2.887 0.54 5.22 ? H3 PIH 201 A 1 HETATM 21 H H4 PIH . A . B 2 -9.532 -2.17 -9.871 0.13 8.51 ? H4 PIH 201 A 1 HETATM 22 H H4 PIH . B . B 2 -7.476 -2.586 -2.853 0.54 5.42 ? H4 PIH 201 A 1 HETATM 23 H H5 PIH . A . B 2 -10.445 -1.486 -7.685 0.13 8.83 ? H5 PIH 201 A 1 HETATM 24 H H5 PIH . B . B 2 -6.375 -3.22 -4.96 0.54 5.68 ? H5 PIH 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #