data_7TO9
#
_model_server_result.job_id            nDBKKnphn2W8Nr9JM5vGbg 
_model_server_result.datetime_utc      '2024-11-08 21:15:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7to9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7TO9 
#
_exptl.entry_id    7TO9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.935 
_cell.angle_gamma         90 
_cell.entry_id            7TO9 
_cell.length_a            40.582 
_cell.length_b            64.366 
_cell.length_c            52.312 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TO9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C LEU 7 C LEU 7 1_555 C N ALY 8 C ALY 8 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 C C LEU 7 C LEU 7 1_555 C N ALY 8 C ALY 8 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 C C ALY 8 C ALY 8 1_555 C N LEU 9 C LEU 9 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 C C ALY 8 C ALY 8 1_555 C N LEU 9 C LEU 9 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 C C LEU 10 C LEU 10 1_555 C N ALY 11 C ALY 11 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 C C LEU 10 C LEU 10 1_555 C N ALY 11 C ALY 11 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 C C ALY 11 C ALY 11 1_555 C N HIS 12 C HIS 12 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 C C ALY 11 C ALY 11 1_555 C N HIS 12 C HIS 12 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 157 n n 
C1 C2 GOL sing 158 n n 
C1 H11 GOL sing 159 n n 
C1 H12 GOL sing 160 n n 
O1 HO1 GOL sing 161 n n 
C2 O2 GOL sing 162 n n 
C2 C3 GOL sing 163 n n 
C2 H2 GOL sing 164 n n 
O2 HO2 GOL sing 165 n n 
C3 O3 GOL sing 166 n n 
C3 H31 GOL sing 167 n n 
C3 H32 GOL sing 168 n n 
O3 HO3 GOL sing 169 n n 
#
_atom_sites.entry_id                     7TO9 
_atom_sites.fract_transf_matrix[1][1]    0.024641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002128 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019187 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 GOL A 1 201 2 GOL GOL . 
E 3 GOL A 1 202 3 GOL GOL . 
F 4 HOH A 1 301 173 HOH HOH . 
F 4 HOH A 2 302 198 HOH HOH . 
F 4 HOH A 3 303 54 HOH HOH . 
F 4 HOH A 4 304 97 HOH HOH . 
F 4 HOH A 5 305 53 HOH HOH . 
F 4 HOH A 6 306 91 HOH HOH . 
F 4 HOH A 7 307 52 HOH HOH . 
F 4 HOH A 8 308 141 HOH HOH . 
F 4 HOH A 9 309 89 HOH HOH . 
F 4 HOH A 10 310 57 HOH HOH . 
F 4 HOH A 11 311 178 HOH HOH . 
F 4 HOH A 12 312 70 HOH HOH . 
F 4 HOH A 13 313 90 HOH HOH . 
F 4 HOH A 14 314 20 HOH HOH . 
F 4 HOH A 15 315 27 HOH HOH . 
F 4 HOH A 16 316 4 HOH HOH . 
F 4 HOH A 17 317 14 HOH HOH . 
F 4 HOH A 18 318 33 HOH HOH . 
F 4 HOH A 19 319 49 HOH HOH . 
F 4 HOH A 20 320 43 HOH HOH . 
F 4 HOH A 21 321 22 HOH HOH . 
F 4 HOH A 22 322 79 HOH HOH . 
F 4 HOH A 23 323 30 HOH HOH . 
F 4 HOH A 24 324 125 HOH HOH . 
F 4 HOH A 25 325 1 HOH HOH . 
F 4 HOH A 26 326 72 HOH HOH . 
F 4 HOH A 27 327 10 HOH HOH . 
F 4 HOH A 28 328 83 HOH HOH . 
F 4 HOH A 29 329 17 HOH HOH . 
F 4 HOH A 30 330 104 HOH HOH . 
F 4 HOH A 31 331 144 HOH HOH . 
F 4 HOH A 32 332 55 HOH HOH . 
F 4 HOH A 33 333 48 HOH HOH . 
F 4 HOH A 34 334 24 HOH HOH . 
F 4 HOH A 35 335 35 HOH HOH . 
F 4 HOH A 36 336 214 HOH HOH . 
F 4 HOH A 37 337 123 HOH HOH . 
F 4 HOH A 38 338 44 HOH HOH . 
F 4 HOH A 39 339 159 HOH HOH . 
F 4 HOH A 40 340 162 HOH HOH . 
F 4 HOH A 41 341 127 HOH HOH . 
F 4 HOH A 42 342 68 HOH HOH . 
F 4 HOH A 43 343 216 HOH HOH . 
F 4 HOH A 44 344 40 HOH HOH . 
F 4 HOH A 45 345 118 HOH HOH . 
F 4 HOH A 46 346 26 HOH HOH . 
F 4 HOH A 47 347 15 HOH HOH . 
F 4 HOH A 48 348 138 HOH HOH . 
F 4 HOH A 49 349 164 HOH HOH . 
F 4 HOH A 50 350 42 HOH HOH . 
F 4 HOH A 51 351 129 HOH HOH . 
F 4 HOH A 52 352 18 HOH HOH . 
F 4 HOH A 53 353 61 HOH HOH . 
F 4 HOH A 54 354 146 HOH HOH . 
F 4 HOH A 55 355 176 HOH HOH . 
F 4 HOH A 56 356 13 HOH HOH . 
F 4 HOH A 57 357 59 HOH HOH . 
F 4 HOH A 58 358 131 HOH HOH . 
F 4 HOH A 59 359 143 HOH HOH . 
F 4 HOH A 60 360 58 HOH HOH . 
F 4 HOH A 61 361 76 HOH HOH . 
F 4 HOH A 62 362 75 HOH HOH . 
F 4 HOH A 63 363 106 HOH HOH . 
F 4 HOH A 64 364 96 HOH HOH . 
F 4 HOH A 65 365 182 HOH HOH . 
F 4 HOH A 66 366 181 HOH HOH . 
F 4 HOH A 67 367 172 HOH HOH . 
F 4 HOH A 68 368 114 HOH HOH . 
F 4 HOH A 69 369 122 HOH HOH . 
F 4 HOH A 70 370 192 HOH HOH . 
F 4 HOH A 71 371 187 HOH HOH . 
F 4 HOH A 72 372 107 HOH HOH . 
F 4 HOH A 73 373 51 HOH HOH . 
F 4 HOH A 74 374 77 HOH HOH . 
F 4 HOH A 75 375 88 HOH HOH . 
F 4 HOH A 76 376 160 HOH HOH . 
F 4 HOH A 77 377 190 HOH HOH . 
F 4 HOH A 78 378 191 HOH HOH . 
F 4 HOH A 79 379 171 HOH HOH . 
F 4 HOH A 80 380 184 HOH HOH . 
F 4 HOH A 81 381 23 HOH HOH . 
F 4 HOH A 82 382 152 HOH HOH . 
F 4 HOH A 83 383 158 HOH HOH . 
F 4 HOH A 84 384 139 HOH HOH . 
F 4 HOH A 85 385 135 HOH HOH . 
F 4 HOH A 86 386 84 HOH HOH . 
F 4 HOH A 87 387 108 HOH HOH . 
F 4 HOH A 88 388 46 HOH HOH . 
F 4 HOH A 89 389 113 HOH HOH . 
F 4 HOH A 90 390 130 HOH HOH . 
F 4 HOH A 91 391 208 HOH HOH . 
F 4 HOH A 92 392 66 HOH HOH . 
F 4 HOH A 93 393 149 HOH HOH . 
G 4 HOH B 1 201 67 HOH HOH . 
G 4 HOH B 2 202 45 HOH HOH . 
G 4 HOH B 3 203 142 HOH HOH . 
G 4 HOH B 4 204 212 HOH HOH . 
G 4 HOH B 5 205 110 HOH HOH . 
G 4 HOH B 6 206 95 HOH HOH . 
G 4 HOH B 7 207 78 HOH HOH . 
G 4 HOH B 8 208 116 HOH HOH . 
G 4 HOH B 9 209 101 HOH HOH . 
G 4 HOH B 10 210 11 HOH HOH . 
G 4 HOH B 11 211 82 HOH HOH . 
G 4 HOH B 12 212 137 HOH HOH . 
G 4 HOH B 13 213 80 HOH HOH . 
G 4 HOH B 14 214 111 HOH HOH . 
G 4 HOH B 15 215 25 HOH HOH . 
G 4 HOH B 16 216 12 HOH HOH . 
G 4 HOH B 17 217 50 HOH HOH . 
G 4 HOH B 18 218 3 HOH HOH . 
G 4 HOH B 19 219 39 HOH HOH . 
G 4 HOH B 20 220 7 HOH HOH . 
G 4 HOH B 21 221 87 HOH HOH . 
G 4 HOH B 22 222 117 HOH HOH . 
G 4 HOH B 23 223 102 HOH HOH . 
G 4 HOH B 24 224 19 HOH HOH . 
G 4 HOH B 25 225 60 HOH HOH . 
G 4 HOH B 26 226 202 HOH HOH . 
G 4 HOH B 27 227 62 HOH HOH . 
G 4 HOH B 28 228 94 HOH HOH . 
G 4 HOH B 29 229 73 HOH HOH . 
G 4 HOH B 30 230 6 HOH HOH . 
G 4 HOH B 31 231 92 HOH HOH . 
G 4 HOH B 32 232 41 HOH HOH . 
G 4 HOH B 33 233 121 HOH HOH . 
G 4 HOH B 34 234 112 HOH HOH . 
G 4 HOH B 35 235 128 HOH HOH . 
G 4 HOH B 36 236 21 HOH HOH . 
G 4 HOH B 37 237 199 HOH HOH . 
G 4 HOH B 38 238 93 HOH HOH . 
G 4 HOH B 39 239 31 HOH HOH . 
G 4 HOH B 40 240 188 HOH HOH . 
G 4 HOH B 41 241 148 HOH HOH . 
G 4 HOH B 42 242 179 HOH HOH . 
G 4 HOH B 43 243 153 HOH HOH . 
G 4 HOH B 44 244 5 HOH HOH . 
G 4 HOH B 45 245 28 HOH HOH . 
G 4 HOH B 46 246 36 HOH HOH . 
G 4 HOH B 47 247 81 HOH HOH . 
G 4 HOH B 48 248 9 HOH HOH . 
G 4 HOH B 49 249 56 HOH HOH . 
G 4 HOH B 50 250 197 HOH HOH . 
G 4 HOH B 51 251 169 HOH HOH . 
G 4 HOH B 52 252 133 HOH HOH . 
G 4 HOH B 53 253 147 HOH HOH . 
G 4 HOH B 54 254 180 HOH HOH . 
G 4 HOH B 55 255 207 HOH HOH . 
G 4 HOH B 56 256 185 HOH HOH . 
G 4 HOH B 57 257 155 HOH HOH . 
G 4 HOH B 58 258 71 HOH HOH . 
G 4 HOH B 59 259 74 HOH HOH . 
G 4 HOH B 60 260 168 HOH HOH . 
G 4 HOH B 61 261 37 HOH HOH . 
G 4 HOH B 62 262 115 HOH HOH . 
G 4 HOH B 63 263 132 HOH HOH . 
G 4 HOH B 64 264 170 HOH HOH . 
G 4 HOH B 65 265 195 HOH HOH . 
G 4 HOH B 66 266 105 HOH HOH . 
G 4 HOH B 67 267 175 HOH HOH . 
G 4 HOH B 68 268 145 HOH HOH . 
G 4 HOH B 69 269 166 HOH HOH . 
G 4 HOH B 70 270 64 HOH HOH . 
G 4 HOH B 71 271 34 HOH HOH . 
G 4 HOH B 72 272 134 HOH HOH . 
G 4 HOH B 73 273 69 HOH HOH . 
G 4 HOH B 74 274 63 HOH HOH . 
G 4 HOH B 75 275 99 HOH HOH . 
G 4 HOH B 76 276 109 HOH HOH . 
H 4 HOH C 1 101 174 HOH HOH . 
H 4 HOH C 2 102 16 HOH HOH . 
H 4 HOH C 3 103 140 HOH HOH . 
H 4 HOH C 4 104 32 HOH HOH . 
H 4 HOH C 5 105 124 HOH HOH . 
H 4 HOH C 6 106 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -28.624 -29.269 -23.619 1 30.42 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . D 3 -28.63 -29.993 -22.424 1 32.46 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . D 3 -29.045 -30.256 -24.678 1 29.93 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . D 3 -28.225 -31.371 -24.633 1 28.74 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . D 3 -28.964 -29.491 -26.012 1 26.61 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . D 3 -27.658 -29.095 -26.174 1 23.07 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#