data_7TOC # _model_server_result.job_id gkqsWEAh-ngkKQvuY8Yldg _model_server_result.datetime_utc '2024-10-10 23:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7toc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":503}' # _entry.id 7TOC # _exptl.entry_id 7TOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7TOC _cell.length_a 145.555 _cell.length_b 145.555 _cell.length_c 244.349 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 223 A ASP 260 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A OD2 ASP 223 A ASP 260 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc3 A OE1 GLU 227 A GLU 264 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 A OE2 GLU 227 A GLU 264 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc5 D O9 MLI . A MLI 502 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 D O6 MLI . A MLI 502 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc7 D O7 MLI . A MLI 502 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc8 F O6 MLI . A MLI 504 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc9 F O8 MLI . A MLI 504 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc10 F O8 MLI . A MLI 504 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 F O9 MLI . A MLI 504 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc12 G MG MG . A MG 505 1_555 M O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc13 M O HOH . A HOH 601 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc14 M O HOH . A HOH 622 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc15 B OD1 ASP 223 B ASP 260 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc16 B OD2 ASP 223 B ASP 260 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc17 B OE1 GLU 227 B GLU 264 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc18 B OE2 GLU 259 B GLU 296 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc19 B OE1 GLU 263 B GLU 300 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc20 J MG MG . B MG 503 1_555 N O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc21 K MG MG . B MG 504 1_555 N O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7TOC _atom_sites.fract_transf_matrix[1][1] 0.00687 _atom_sites.fract_transf_matrix[1][2] 0.003967 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 501 NDP NDP . D 3 MLI A 1 502 502 MLI MLI . E 4 ACY A 1 503 503 ACY ACY . F 3 MLI A 1 504 502 MLI MLI . G 5 MG A 1 505 3 MG MG . H 2 NDP B 1 501 501 NDP NDP . I 4 ACY B 1 502 503 ACY ACY . J 5 MG B 1 503 1 MG MG . K 5 MG B 1 504 2 MG MG . L 5 MG B 1 505 4 MG MG . M 6 HOH A 1 601 82 HOH HOH . M 6 HOH A 2 602 29 HOH HOH . M 6 HOH A 3 603 25 HOH HOH . M 6 HOH A 4 604 51 HOH HOH . M 6 HOH A 5 605 58 HOH HOH . M 6 HOH A 6 606 59 HOH HOH . M 6 HOH A 7 607 71 HOH HOH . M 6 HOH A 8 608 22 HOH HOH . M 6 HOH A 9 609 77 HOH HOH . M 6 HOH A 10 610 23 HOH HOH . M 6 HOH A 11 611 50 HOH HOH . M 6 HOH A 12 612 8 HOH HOH . M 6 HOH A 13 613 32 HOH HOH . M 6 HOH A 14 614 27 HOH HOH . M 6 HOH A 15 615 55 HOH HOH . M 6 HOH A 16 616 21 HOH HOH . M 6 HOH A 17 617 26 HOH HOH . M 6 HOH A 18 618 15 HOH HOH . M 6 HOH A 19 619 75 HOH HOH . M 6 HOH A 20 620 4 HOH HOH . M 6 HOH A 21 621 63 HOH HOH . M 6 HOH A 22 622 7 HOH HOH . M 6 HOH A 23 623 78 HOH HOH . M 6 HOH A 24 624 40 HOH HOH . M 6 HOH A 25 625 69 HOH HOH . M 6 HOH A 26 626 79 HOH HOH . M 6 HOH A 27 627 65 HOH HOH . M 6 HOH A 28 628 30 HOH HOH . M 6 HOH A 29 629 18 HOH HOH . M 6 HOH A 30 630 64 HOH HOH . M 6 HOH A 31 631 47 HOH HOH . M 6 HOH A 32 632 19 HOH HOH . M 6 HOH A 33 633 9 HOH HOH . M 6 HOH A 34 634 72 HOH HOH . M 6 HOH A 35 635 28 HOH HOH . M 6 HOH A 36 636 73 HOH HOH . M 6 HOH A 37 637 70 HOH HOH . M 6 HOH A 38 638 54 HOH HOH . M 6 HOH A 39 639 53 HOH HOH . M 6 HOH A 40 640 52 HOH HOH . N 6 HOH B 1 601 35 HOH HOH . N 6 HOH B 2 602 81 HOH HOH . N 6 HOH B 3 603 10 HOH HOH . N 6 HOH B 4 604 37 HOH HOH . N 6 HOH B 5 605 14 HOH HOH . N 6 HOH B 6 606 38 HOH HOH . N 6 HOH B 7 607 57 HOH HOH . N 6 HOH B 8 608 36 HOH HOH . N 6 HOH B 9 609 13 HOH HOH . N 6 HOH B 10 610 41 HOH HOH . N 6 HOH B 11 611 11 HOH HOH . N 6 HOH B 12 612 67 HOH HOH . N 6 HOH B 13 613 56 HOH HOH . N 6 HOH B 14 614 45 HOH HOH . N 6 HOH B 15 615 49 HOH HOH . N 6 HOH B 16 616 24 HOH HOH . N 6 HOH B 17 617 43 HOH HOH . N 6 HOH B 18 618 76 HOH HOH . N 6 HOH B 19 619 80 HOH HOH . N 6 HOH B 20 620 62 HOH HOH . N 6 HOH B 21 621 66 HOH HOH . N 6 HOH B 22 622 61 HOH HOH . N 6 HOH B 23 623 46 HOH HOH . N 6 HOH B 24 624 68 HOH HOH . N 6 HOH B 25 625 74 HOH HOH . N 6 HOH B 26 626 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x -15.439 _atom_site.Cartn_y -49.477 _atom_site.Cartn_z -44.157 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #