data_7TOC
#
_model_server_result.job_id            nj3I0szA45Px-0qpnkJUQA 
_model_server_result.datetime_utc      '2024-12-22 02:33:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7toc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    7TOC 
#
_exptl.entry_id    7TOC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7TOC 
_cell.length_a            145.555 
_cell.length_b            145.555 
_cell.length_c            244.349 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TOC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 223 A ASP 260 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc2 A OD2 ASP 223 A ASP 260 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc3 A OE1 GLU 227 A GLU 264 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc4 A OE2 GLU 227 A GLU 264 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? 
metalc ? metalc5 D O9 MLI . A MLI 502 1_555 G MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc6 D O6 MLI . A MLI 502 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc7 D O7 MLI . A MLI 502 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc8 F O6 MLI . A MLI 504 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc9 F O8 MLI . A MLI 504 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc10 F O8 MLI . A MLI 504 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc11 F O9 MLI . A MLI 504 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc12 G MG MG . A MG 505 1_555 M O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc13 M O HOH . A HOH 601 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc14 M O HOH . A HOH 622 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc15 B OD1 ASP 223 B ASP 260 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc16 B OD2 ASP 223 B ASP 260 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc17 B OE1 GLU 227 B GLU 264 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc18 B OE2 GLU 259 B GLU 296 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc19 B OE1 GLU 263 B GLU 300 1_555 L MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? 
metalc ? metalc20 J MG MG . B MG 503 1_555 N O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc21 K MG MG . B MG 504 1_555 N O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 244 n n 
C1 C3 MLI sing 245 n n 
C1 H11 MLI sing 246 n n 
C1 H12 MLI sing 247 n n 
C2 O6 MLI doub 248 n n 
C2 O7 MLI sing 249 n n 
C3 O8 MLI doub 250 n n 
C3 O9 MLI sing 251 n n 
#
_atom_sites.entry_id                     7TOC 
_atom_sites.fract_transf_matrix[1][1]    0.00687 
_atom_sites.fract_transf_matrix[1][2]    0.003967 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004093 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 501 501 NDP NDP . 
D 3 MLI A 1 502 502 MLI MLI . 
E 4 ACY A 1 503 503 ACY ACY . 
F 3 MLI A 1 504 502 MLI MLI . 
G 5 MG A 1 505 3 MG MG . 
H 2 NDP B 1 501 501 NDP NDP . 
I 4 ACY B 1 502 503 ACY ACY . 
J 5 MG B 1 503 1 MG MG . 
K 5 MG B 1 504 2 MG MG . 
L 5 MG B 1 505 4 MG MG . 
M 6 HOH A 1 601 82 HOH HOH . 
M 6 HOH A 2 602 29 HOH HOH . 
M 6 HOH A 3 603 25 HOH HOH . 
M 6 HOH A 4 604 51 HOH HOH . 
M 6 HOH A 5 605 58 HOH HOH . 
M 6 HOH A 6 606 59 HOH HOH . 
M 6 HOH A 7 607 71 HOH HOH . 
M 6 HOH A 8 608 22 HOH HOH . 
M 6 HOH A 9 609 77 HOH HOH . 
M 6 HOH A 10 610 23 HOH HOH . 
M 6 HOH A 11 611 50 HOH HOH . 
M 6 HOH A 12 612 8 HOH HOH . 
M 6 HOH A 13 613 32 HOH HOH . 
M 6 HOH A 14 614 27 HOH HOH . 
M 6 HOH A 15 615 55 HOH HOH . 
M 6 HOH A 16 616 21 HOH HOH . 
M 6 HOH A 17 617 26 HOH HOH . 
M 6 HOH A 18 618 15 HOH HOH . 
M 6 HOH A 19 619 75 HOH HOH . 
M 6 HOH A 20 620 4 HOH HOH . 
M 6 HOH A 21 621 63 HOH HOH . 
M 6 HOH A 22 622 7 HOH HOH . 
M 6 HOH A 23 623 78 HOH HOH . 
M 6 HOH A 24 624 40 HOH HOH . 
M 6 HOH A 25 625 69 HOH HOH . 
M 6 HOH A 26 626 79 HOH HOH . 
M 6 HOH A 27 627 65 HOH HOH . 
M 6 HOH A 28 628 30 HOH HOH . 
M 6 HOH A 29 629 18 HOH HOH . 
M 6 HOH A 30 630 64 HOH HOH . 
M 6 HOH A 31 631 47 HOH HOH . 
M 6 HOH A 32 632 19 HOH HOH . 
M 6 HOH A 33 633 9 HOH HOH . 
M 6 HOH A 34 634 72 HOH HOH . 
M 6 HOH A 35 635 28 HOH HOH . 
M 6 HOH A 36 636 73 HOH HOH . 
M 6 HOH A 37 637 70 HOH HOH . 
M 6 HOH A 38 638 54 HOH HOH . 
M 6 HOH A 39 639 53 HOH HOH . 
M 6 HOH A 40 640 52 HOH HOH . 
N 6 HOH B 1 601 35 HOH HOH . 
N 6 HOH B 2 602 81 HOH HOH . 
N 6 HOH B 3 603 10 HOH HOH . 
N 6 HOH B 4 604 37 HOH HOH . 
N 6 HOH B 5 605 14 HOH HOH . 
N 6 HOH B 6 606 38 HOH HOH . 
N 6 HOH B 7 607 57 HOH HOH . 
N 6 HOH B 8 608 36 HOH HOH . 
N 6 HOH B 9 609 13 HOH HOH . 
N 6 HOH B 10 610 41 HOH HOH . 
N 6 HOH B 11 611 11 HOH HOH . 
N 6 HOH B 12 612 67 HOH HOH . 
N 6 HOH B 13 613 56 HOH HOH . 
N 6 HOH B 14 614 45 HOH HOH . 
N 6 HOH B 15 615 49 HOH HOH . 
N 6 HOH B 16 616 24 HOH HOH . 
N 6 HOH B 17 617 43 HOH HOH . 
N 6 HOH B 18 618 76 HOH HOH . 
N 6 HOH B 19 619 80 HOH HOH . 
N 6 HOH B 20 620 62 HOH HOH . 
N 6 HOH B 21 621 66 HOH HOH . 
N 6 HOH B 22 622 61 HOH HOH . 
N 6 HOH B 23 623 46 HOH HOH . 
N 6 HOH B 24 624 68 HOH HOH . 
N 6 HOH B 25 625 74 HOH HOH . 
N 6 HOH B 26 626 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . F 3 -13.668 -51.738 -41.916 1 64.39 ? C1 MLI 504 A 1 
HETATM 2 C C2 MLI . . . F 3 -13.345 -51.832 -43.406 1 65 ? C2 MLI 504 A 1 
HETATM 3 C C3 MLI . . . F 3 -15.178 -51.631 -41.717 1 70.41 ? C3 MLI 504 A 1 
HETATM 4 O O6 MLI . . . F 3 -13.697 -50.888 -44.139 1 67.17 ? O6 MLI 504 A 1 
HETATM 5 O O7 MLI . . . F 3 -12.739 -52.841 -43.821 1 59.91 ? O7 MLI 504 A 1 
HETATM 6 O O8 MLI . . . F 3 -15.839 -51.018 -42.573 1 67.49 ? O8 MLI 504 A 1 
HETATM 7 O O9 MLI . . . F 3 -15.68 -52.177 -40.717 1 65.21 ? O9 MLI 504 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#