data_7TPG # _model_server_result.job_id nHh3NZcG0LosSU5NUjRK5A _model_server_result.datetime_utc '2025-03-01 03:00:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7TPG # _exptl.entry_id 7TPG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 314.209 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERANYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TPG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 299 B CYS 299 1_555 A SG CYS 307 B CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 24 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C10 H20 O7 P2' _chem_comp.formula_weight 314.209 _chem_comp.id GPP _chem_comp.mon_nstd_flag . _chem_comp.name 'GERANYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GPP sing 129 n n C1 C2 GPP sing 130 n n C1 H11 GPP sing 131 n n C1 H12 GPP sing 132 n n O1 PA GPP sing 133 n n C2 C3 GPP doub 134 e n C2 H2 GPP sing 135 n n C3 C4 GPP sing 136 n n C3 C5 GPP sing 137 n n C4 H41 GPP sing 138 n n C4 H42 GPP sing 139 n n C4 H43 GPP sing 140 n n C5 C6 GPP sing 141 n n C5 H51 GPP sing 142 n n C5 H52 GPP sing 143 n n C6 C7 GPP sing 144 n n C6 H61 GPP sing 145 n n C6 H62 GPP sing 146 n n C7 C8 GPP doub 147 n n C7 H7 GPP sing 148 n n C8 C9 GPP sing 149 n n C8 C10 GPP sing 150 n n C9 H91 GPP sing 151 n n C9 H92 GPP sing 152 n n C9 H93 GPP sing 153 n n C10 H101 GPP sing 154 n n C10 H102 GPP sing 155 n n C10 H103 GPP sing 156 n n PA O1A GPP doub 157 n n PA O2A GPP sing 158 n n PA O3A GPP sing 159 n n O2A HOA2 GPP sing 160 n n O3A PB GPP sing 161 n n PB O1B GPP doub 162 n n PB O2B GPP sing 163 n n PB O3B GPP sing 164 n n O2B HOB2 GPP sing 165 n n O3B HOB3 GPP sing 166 n n # _atom_sites.entry_id 7TPG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id GPP _pdbx_nonpoly_scheme.pdb_strand_id H _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id GPP _pdbx_nonpoly_scheme.auth_mon_id UND _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GPP . . . D 4 128.629 151.304 130.926 1 61.05 ? C1 GPP 301 H 1 HETATM 2 O O1 GPP . . . D 4 127.785 150.272 130.486 1 61.05 ? O1 GPP 301 H 1 HETATM 3 C C2 GPP . . . D 4 128.695 151.273 132.464 1 61.05 ? C2 GPP 301 H 1 HETATM 4 C C3 GPP . . . D 4 129.829 151.569 133.095 1 61.05 ? C3 GPP 301 H 1 HETATM 5 C C4 GPP . . . D 4 131.091 151.949 132.285 1 61.05 ? C4 GPP 301 H 1 HETATM 6 C C5 GPP . . . D 4 129.889 151.537 134.648 1 61.05 ? C5 GPP 301 H 1 HETATM 7 C C6 GPP . . . D 4 130.288 152.919 135.171 1 61.05 ? C6 GPP 301 H 1 HETATM 8 C C7 GPP . . . D 4 129.948 153.027 136.674 1 61.05 ? C7 GPP 301 H 1 HETATM 9 C C8 GPP . . . D 4 130.158 154.176 137.328 1 61.05 ? C8 GPP 301 H 1 HETATM 10 C C9 GPP . . . D 4 129.819 154.29 138.828 1 61.05 ? C9 GPP 301 H 1 HETATM 11 C C10 GPP . . . D 4 130.735 155.386 136.597 1 61.05 ? C10 GPP 301 H 1 HETATM 12 P PA GPP . . . D 4 128.448 149.047 129.599 1 61.05 ? PA GPP 301 H 1 HETATM 13 O O1A GPP . . . D 4 127.512 148.67 128.468 1 61.05 ? O1A GPP 301 H 1 HETATM 14 O O2A GPP . . . D 4 129.778 149.498 129.037 1 61.05 ? O2A GPP 301 H 1 HETATM 15 O O3A GPP . . . D 4 128.691 147.744 130.579 1 61.05 ? O3A GPP 301 H 1 HETATM 16 P PB GPP . . . D 4 129.543 146.397 130.127 1 61.05 ? PB GPP 301 H 1 HETATM 17 O O1B GPP . . . D 4 128.67 145.521 129.261 1 61.05 ? O1B GPP 301 H 1 HETATM 18 O O2B GPP . . . D 4 129.97 145.628 131.36 1 61.05 ? O2B GPP 301 H 1 HETATM 19 O O3B GPP . . . D 4 130.762 146.812 129.347 1 61.05 ? O3B GPP 301 H 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 19 #