data_7TPS # _model_server_result.job_id jXavjLkNctPqIMEDZx92ZA _model_server_result.datetime_utc '2024-12-27 01:48:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":302}' # _entry.id 7TPS # _exptl.entry_id 7TPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TPS _cell.length_a 59.928 _cell.length_b 122.152 _cell.length_c 152.675 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,P,Q 1 1 C,D,G,H,L,M,N,O,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O3 HO3 . sing 4 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG 4 n E FUC 3 E 3 FUC E 3 FUC 5 n F NAG 1 F 1 NAG F 1 NAG 5 n F NAG 2 F 2 NAG F 2 NAG 5 n F FUC 3 F 3 FUC F 3 FUC 4 n G NAG 1 G 1 NAG G 1 NAG 4 n G NAG 2 G 2 NAG G 2 NAG 4 n G FUC 3 G 3 FUC G 3 FUC 4 n H NAG 1 H 1 NAG H 1 NAG 4 n H NAG 2 H 2 NAG H 2 NAG 4 n H FUC 3 H 3 FUC H 3 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 50 1_555 A SG CYS 82 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 22 B CYS 40 1_555 B SG CYS 96 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 137 B CYS 155 1_555 B SG CYS 191 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 C SG CYS 16 C CYS 50 1_555 C SG CYS 82 C CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 D SG CYS 22 D CYS 40 1_555 D SG CYS 96 D CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 D SG CYS 137 D CYS 155 1_555 D SG CYS 191 D CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 19 A ASN 53 1_555 I C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 55 A ASN 89 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 B ND2 ASN 17 B ASN 35 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B C ILE 108 B ILE 126 1_555 B N TPO 109 B TPO 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale5 B C TPO 109 B TPO 127 1_555 B N VAL 110 B VAL 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B ND2 ASN 174 B ASN 192 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 B ND2 ASN 182 B ASN 200 1_555 K C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 C ND2 ASN 19 C ASN 53 1_555 L C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 C ND2 ASN 55 C ASN 89 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 D ND2 ASN 17 D ASN 35 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale11 D ND2 ASN 174 D ASN 192 1_555 M C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale12 D ND2 ASN 182 D ASN 200 1_555 N C1 NAG . D NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale14 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale15 F O3 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale16 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale17 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale18 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale20 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 273 n n C1 O1 NAG sing 274 n n C1 O5 NAG sing 275 n n C1 H1 NAG sing 276 n n C2 C3 NAG sing 277 n n C2 N2 NAG sing 278 n n C2 H2 NAG sing 279 n n C3 C4 NAG sing 280 n n C3 O3 NAG sing 281 n n C3 H3 NAG sing 282 n n C4 C5 NAG sing 283 n n C4 O4 NAG sing 284 n n C4 H4 NAG sing 285 n n C5 C6 NAG sing 286 n n C5 O5 NAG sing 287 n n C5 H5 NAG sing 288 n n C6 O6 NAG sing 289 n n C6 H61 NAG sing 290 n n C6 H62 NAG sing 291 n n C7 C8 NAG sing 292 n n C7 N2 NAG sing 293 n n C7 O7 NAG doub 294 n n C8 H81 NAG sing 295 n n C8 H82 NAG sing 296 n n C8 H83 NAG sing 297 n n N2 HN2 NAG sing 298 n n O1 HO1 NAG sing 299 n n O3 HO3 NAG sing 300 n n O4 HO4 NAG sing 301 n n O6 HO6 NAG sing 302 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7TPS _atom_sites.fract_transf_matrix[1][1] 0.016687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 NAG A 1 201 201 NAG NAG . J 6 NAG B 1 301 301 NAG NAG . K 6 NAG B 1 302 302 NAG NAG . L 6 NAG C 1 201 201 NAG NAG . M 6 NAG D 1 301 301 NAG NAG . N 6 NAG D 1 302 302 NAG NAG . O 7 GOL D 1 303 303 GOL GOL . P 8 HOH A 1 301 301 HOH HOH . P 8 HOH A 2 302 302 HOH HOH . P 8 HOH A 3 303 303 HOH HOH . P 8 HOH A 4 304 304 HOH HOH . P 8 HOH A 5 305 305 HOH HOH . P 8 HOH A 6 306 306 HOH HOH . P 8 HOH A 7 307 307 HOH HOH . P 8 HOH A 8 308 308 HOH HOH . P 8 HOH A 9 309 309 HOH HOH . P 8 HOH A 10 310 310 HOH HOH . Q 8 HOH B 1 401 401 HOH HOH . Q 8 HOH B 2 402 402 HOH HOH . Q 8 HOH B 3 403 403 HOH HOH . Q 8 HOH B 4 404 404 HOH HOH . Q 8 HOH B 5 405 405 HOH HOH . Q 8 HOH B 6 406 406 HOH HOH . Q 8 HOH B 7 407 407 HOH HOH . Q 8 HOH B 8 408 408 HOH HOH . Q 8 HOH B 9 409 409 HOH HOH . Q 8 HOH B 10 410 410 HOH HOH . Q 8 HOH B 11 411 411 HOH HOH . Q 8 HOH B 12 412 412 HOH HOH . Q 8 HOH B 13 413 413 HOH HOH . Q 8 HOH B 14 414 414 HOH HOH . Q 8 HOH B 15 415 415 HOH HOH . Q 8 HOH B 16 416 416 HOH HOH . Q 8 HOH B 17 417 417 HOH HOH . Q 8 HOH B 18 418 418 HOH HOH . Q 8 HOH B 19 419 419 HOH HOH . Q 8 HOH B 20 420 420 HOH HOH . Q 8 HOH B 21 421 421 HOH HOH . Q 8 HOH B 22 422 422 HOH HOH . Q 8 HOH B 23 423 423 HOH HOH . Q 8 HOH B 24 424 424 HOH HOH . Q 8 HOH B 25 425 425 HOH HOH . Q 8 HOH B 26 426 426 HOH HOH . Q 8 HOH B 27 427 427 HOH HOH . Q 8 HOH B 28 428 428 HOH HOH . Q 8 HOH B 29 429 429 HOH HOH . Q 8 HOH B 30 430 430 HOH HOH . R 8 HOH C 1 301 301 HOH HOH . R 8 HOH C 2 302 302 HOH HOH . S 8 HOH D 1 401 401 HOH HOH . S 8 HOH D 2 402 402 HOH HOH . S 8 HOH D 3 403 403 HOH HOH . S 8 HOH D 4 404 404 HOH HOH . S 8 HOH D 5 405 405 HOH HOH . S 8 HOH D 6 406 406 HOH HOH . S 8 HOH D 7 407 407 HOH HOH . S 8 HOH D 8 408 408 HOH HOH . S 8 HOH D 9 409 409 HOH HOH . S 8 HOH D 10 410 410 HOH HOH . S 8 HOH D 11 411 411 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 6 -28.792 -22.906 -62.311 1 131.47 ? C1 NAG 302 D 1 HETATM 2 C C2 NAG . . . N 6 -29.172 -21.772 -63.266 1 132.1 ? C2 NAG 302 D 1 HETATM 3 C C3 NAG . . . N 6 -30.091 -22.329 -64.357 1 132.4 ? C3 NAG 302 D 1 HETATM 4 C C4 NAG . . . N 6 -29.402 -23.493 -65.072 1 132.46 ? C4 NAG 302 D 1 HETATM 5 C C5 NAG . . . N 6 -28.953 -24.549 -64.062 1 132.06 ? C5 NAG 302 D 1 HETATM 6 C C6 NAG . . . N 6 -28.145 -25.66 -64.69 1 131.99 ? C6 NAG 302 D 1 HETATM 7 C C7 NAG . . . N 6 -30.779 -20.595 -61.747 1 131.75 ? C7 NAG 302 D 1 HETATM 8 C C8 NAG . . . N 6 -30.964 -19.335 -60.956 1 131.72 ? C8 NAG 302 D 1 HETATM 9 N N2 NAG . . . N 6 -29.754 -20.594 -62.626 1 131.95 ? N2 NAG 302 D 1 HETATM 10 O O3 NAG . . . N 6 -30.432 -21.294 -65.278 1 132.28 ? O3 NAG 302 D 1 HETATM 11 O O4 NAG . . . N 6 -30.241 -24.093 -66.059 1 132.55 ? O4 NAG 302 D 1 HETATM 12 O O5 NAG . . . N 6 -28.135 -23.956 -63.031 1 131.75 ? O5 NAG 302 D 1 HETATM 13 O O6 NAG . . . N 6 -26.867 -25.203 -65.119 1 132.1 ? O6 NAG 302 D 1 HETATM 14 O O7 NAG . . . N 6 -31.512 -21.568 -61.596 1 131.63 ? O7 NAG 302 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #