data_7TQ1 # _model_server_result.job_id IejG-KViOsNk2KyRHgj0lA _model_server_result.datetime_utc '2024-11-07 15:44:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7TQ1 # _exptl.entry_id 7TQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.163 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-HYDROXYMETHYLPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TQ1 _cell.length_a 77.884 _cell.length_b 84.571 _cell.length_c 175.486 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2 B,D,F 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -84.571 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C7 H7 N5 O2' _chem_comp.formula_weight 193.163 _chem_comp.id HHR _chem_comp.mon_nstd_flag . _chem_comp.name 6-HYDROXYMETHYLPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 N8 HHR doub 129 n y C7 C6 HHR sing 130 n y C7 H71 HHR sing 131 n n N8 C9 HHR sing 132 n y C9 N1 HHR sing 133 n y C9 C10 HHR doub 134 n y N1 C2 HHR doub 135 n y C2 N2 HHR sing 136 n n C2 N3 HHR sing 137 n y N2 HN21 HHR sing 138 n n N2 HN22 HHR sing 139 n n C10 C4 HHR sing 140 n y C10 N5 HHR sing 141 n y C4 N3 HHR sing 142 n y C4 O4 HHR doub 143 n n N3 HN3 HHR sing 144 n n N5 C6 HHR doub 145 n y C6 C6A HHR sing 146 n n C6A O6A HHR sing 147 n n C6A H6A1 HHR sing 148 n n C6A H6A2 HHR sing 149 n n O6A HO6 HHR sing 150 n n # _atom_sites.entry_id 7TQ1 _atom_sites.fract_transf_matrix[1][1] 0.01284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HHR A 1 301 301 HHR HHR . D 2 HHR B 1 301 301 HHR HHR . E 3 HOH A 1 401 50 HOH HOH . E 3 HOH A 2 402 38 HOH HOH . E 3 HOH A 3 403 30 HOH HOH . E 3 HOH A 4 404 8 HOH HOH . E 3 HOH A 5 405 31 HOH HOH . E 3 HOH A 6 406 47 HOH HOH . E 3 HOH A 7 407 56 HOH HOH . E 3 HOH A 8 408 11 HOH HOH . E 3 HOH A 9 409 49 HOH HOH . E 3 HOH A 10 410 12 HOH HOH . E 3 HOH A 11 411 33 HOH HOH . E 3 HOH A 12 412 17 HOH HOH . E 3 HOH A 13 413 15 HOH HOH . E 3 HOH A 14 414 25 HOH HOH . E 3 HOH A 15 415 39 HOH HOH . E 3 HOH A 16 416 18 HOH HOH . E 3 HOH A 17 417 51 HOH HOH . E 3 HOH A 18 418 14 HOH HOH . E 3 HOH A 19 419 43 HOH HOH . E 3 HOH A 20 420 53 HOH HOH . E 3 HOH A 21 421 6 HOH HOH . E 3 HOH A 22 422 57 HOH HOH . E 3 HOH A 23 423 46 HOH HOH . E 3 HOH A 24 424 40 HOH HOH . E 3 HOH A 25 425 48 HOH HOH . E 3 HOH A 26 426 37 HOH HOH . E 3 HOH A 27 427 54 HOH HOH . E 3 HOH A 28 428 23 HOH HOH . F 3 HOH B 1 401 32 HOH HOH . F 3 HOH B 2 402 35 HOH HOH . F 3 HOH B 3 403 1 HOH HOH . F 3 HOH B 4 404 36 HOH HOH . F 3 HOH B 5 405 26 HOH HOH . F 3 HOH B 6 406 44 HOH HOH . F 3 HOH B 7 407 60 HOH HOH . F 3 HOH B 8 408 4 HOH HOH . F 3 HOH B 9 409 58 HOH HOH . F 3 HOH B 10 410 13 HOH HOH . F 3 HOH B 11 411 29 HOH HOH . F 3 HOH B 12 412 16 HOH HOH . F 3 HOH B 13 413 10 HOH HOH . F 3 HOH B 14 414 59 HOH HOH . F 3 HOH B 15 415 3 HOH HOH . F 3 HOH B 16 416 21 HOH HOH . F 3 HOH B 17 417 19 HOH HOH . F 3 HOH B 18 418 52 HOH HOH . F 3 HOH B 19 419 61 HOH HOH . F 3 HOH B 20 420 24 HOH HOH . F 3 HOH B 21 421 45 HOH HOH . F 3 HOH B 22 422 55 HOH HOH . F 3 HOH B 23 423 62 HOH HOH . F 3 HOH B 24 424 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 HHR . . . D 2 20.708 -38.265 23.224 1 78.87 ? C7 HHR 301 B 1 HETATM 2 N N8 HHR . . . D 2 20.825 -37.174 24.096 1 79.64 ? N8 HHR 301 B 1 HETATM 3 C C9 HHR . . . D 2 20.167 -37.178 25.265 1 80.07 ? C9 HHR 301 B 1 HETATM 4 N N1 HHR . . . D 2 20.283 -36.129 26.102 1 77.36 ? N1 HHR 301 B 1 HETATM 5 C C2 HHR . . . D 2 19.639 -36.098 27.283 1 74.16 ? C2 HHR 301 B 1 HETATM 6 N N2 HHR . . . D 2 19.773 -35.051 28.093 1 71.29 ? N2 HHR 301 B 1 HETATM 7 C C10 HHR . . . D 2 19.371 -38.271 25.602 1 77.47 ? C10 HHR 301 B 1 HETATM 8 C C4 HHR . . . D 2 18.691 -38.272 26.817 1 77.36 ? C4 HHR 301 B 1 HETATM 9 N N3 HHR . . . D 2 18.825 -37.17 27.671 1 77.09 ? N3 HHR 301 B 1 HETATM 10 O O4 HHR . . . D 2 17.978 -39.219 27.15 1 73.37 ? O4 HHR 301 B 1 HETATM 11 N N5 HHR . . . D 2 19.257 -39.317 24.764 1 76.72 ? N5 HHR 301 B 1 HETATM 12 C C6 HHR . . . D 2 19.902 -39.338 23.587 1 77.53 ? C6 HHR 301 B 1 HETATM 13 C C6A HHR . . . D 2 19.774 -40.437 22.742 1 78.71 ? C6A HHR 301 B 1 HETATM 14 O O6A HHR . . . D 2 20.488 -40.372 21.583 1 83.6 ? O6A HHR 301 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #