data_7TQ9 # _model_server_result.job_id nd0oASMsJhri4N4ufN00yQ _model_server_result.datetime_utc '2024-11-17 13:20:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7TQ9 # _exptl.entry_id 7TQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TQ9 _cell.length_a 45.835 _cell.length_b 74.406 _cell.length_c 74.689 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -74.406 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 16 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 A SG CYS 98 A CYS 97 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 98 A CYS 97 1_555 C FE1 SFS . A SFS 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A SG CYS 133 A CYS 132 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 A SG CYS 133 A CYS 132 1_555 C FE2 SFS . A SFS 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 D MG MG . A MG 303 1_555 E O3B ADP . A ADP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 D MG MG . A MG 303 1_555 F O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc8 D MG MG . A MG 303 1_555 F O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc9 D MG MG . A MG 303 1_555 F O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc10 D MG MG . A MG 303 1_555 F O HOH . A HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7TQ9 _atom_sites.fract_transf_matrix[1][1] 0.021817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 301 SF4 SF4 . C 3 SFS A 1 302 302 SFS SFS . D 4 MG A 1 303 305 MG MG . E 5 ADP A 1 304 306 ADP ADP . F 6 HOH A 1 401 64 HOH HOH . F 6 HOH A 2 402 41 HOH HOH . F 6 HOH A 3 403 56 HOH HOH . F 6 HOH A 4 404 33 HOH HOH . F 6 HOH A 5 405 51 HOH HOH . F 6 HOH A 6 406 68 HOH HOH . F 6 HOH A 7 407 34 HOH HOH . F 6 HOH A 8 408 88 HOH HOH . F 6 HOH A 9 409 31 HOH HOH . F 6 HOH A 10 410 122 HOH HOH . F 6 HOH A 11 411 161 HOH HOH . F 6 HOH A 12 412 75 HOH HOH . F 6 HOH A 13 413 84 HOH HOH . F 6 HOH A 14 414 22 HOH HOH . F 6 HOH A 15 415 104 HOH HOH . F 6 HOH A 16 416 60 HOH HOH . F 6 HOH A 17 417 106 HOH HOH . F 6 HOH A 18 418 38 HOH HOH . F 6 HOH A 19 419 124 HOH HOH . F 6 HOH A 20 420 76 HOH HOH . F 6 HOH A 21 421 115 HOH HOH . F 6 HOH A 22 422 92 HOH HOH . F 6 HOH A 23 423 7 HOH HOH . F 6 HOH A 24 424 67 HOH HOH . F 6 HOH A 25 425 20 HOH HOH . F 6 HOH A 26 426 109 HOH HOH . F 6 HOH A 27 427 17 HOH HOH . F 6 HOH A 28 428 94 HOH HOH . F 6 HOH A 29 429 37 HOH HOH . F 6 HOH A 30 430 6 HOH HOH . F 6 HOH A 31 431 72 HOH HOH . F 6 HOH A 32 432 9 HOH HOH . F 6 HOH A 33 433 80 HOH HOH . F 6 HOH A 34 434 14 HOH HOH . F 6 HOH A 35 435 46 HOH HOH . F 6 HOH A 36 436 85 HOH HOH . F 6 HOH A 37 437 29 HOH HOH . F 6 HOH A 38 438 100 HOH HOH . F 6 HOH A 39 439 23 HOH HOH . F 6 HOH A 40 440 102 HOH HOH . F 6 HOH A 41 441 144 HOH HOH . F 6 HOH A 42 442 54 HOH HOH . F 6 HOH A 43 443 4 HOH HOH . F 6 HOH A 44 444 105 HOH HOH . F 6 HOH A 45 445 25 HOH HOH . F 6 HOH A 46 446 13 HOH HOH . F 6 HOH A 47 447 128 HOH HOH . F 6 HOH A 48 448 21 HOH HOH . F 6 HOH A 49 449 15 HOH HOH . F 6 HOH A 50 450 3 HOH HOH . F 6 HOH A 51 451 5 HOH HOH . F 6 HOH A 52 452 114 HOH HOH . F 6 HOH A 53 453 39 HOH HOH . F 6 HOH A 54 454 36 HOH HOH . F 6 HOH A 55 455 63 HOH HOH . F 6 HOH A 56 456 120 HOH HOH . F 6 HOH A 57 457 147 HOH HOH . F 6 HOH A 58 458 66 HOH HOH . F 6 HOH A 59 459 19 HOH HOH . F 6 HOH A 60 460 99 HOH HOH . F 6 HOH A 61 461 1 HOH HOH . F 6 HOH A 62 462 62 HOH HOH . F 6 HOH A 63 463 130 HOH HOH . F 6 HOH A 64 464 2 HOH HOH . F 6 HOH A 65 465 65 HOH HOH . F 6 HOH A 66 466 8 HOH HOH . F 6 HOH A 67 467 10 HOH HOH . F 6 HOH A 68 468 164 HOH HOH . F 6 HOH A 69 469 24 HOH HOH . F 6 HOH A 70 470 83 HOH HOH . F 6 HOH A 71 471 11 HOH HOH . F 6 HOH A 72 472 26 HOH HOH . F 6 HOH A 73 473 58 HOH HOH . F 6 HOH A 74 474 87 HOH HOH . F 6 HOH A 75 475 107 HOH HOH . F 6 HOH A 76 476 156 HOH HOH . F 6 HOH A 77 477 16 HOH HOH . F 6 HOH A 78 478 35 HOH HOH . F 6 HOH A 79 479 90 HOH HOH . F 6 HOH A 80 480 44 HOH HOH . F 6 HOH A 81 481 81 HOH HOH . F 6 HOH A 82 482 71 HOH HOH . F 6 HOH A 83 483 152 HOH HOH . F 6 HOH A 84 484 45 HOH HOH . F 6 HOH A 85 485 119 HOH HOH . F 6 HOH A 86 486 159 HOH HOH . F 6 HOH A 87 487 129 HOH HOH . F 6 HOH A 88 488 95 HOH HOH . F 6 HOH A 89 489 49 HOH HOH . F 6 HOH A 90 490 136 HOH HOH . F 6 HOH A 91 491 148 HOH HOH . F 6 HOH A 92 492 27 HOH HOH . F 6 HOH A 93 493 40 HOH HOH . F 6 HOH A 94 494 18 HOH HOH . F 6 HOH A 95 495 53 HOH HOH . F 6 HOH A 96 496 73 HOH HOH . F 6 HOH A 97 497 57 HOH HOH . F 6 HOH A 98 498 70 HOH HOH . F 6 HOH A 99 499 32 HOH HOH . F 6 HOH A 100 500 142 HOH HOH . F 6 HOH A 101 501 48 HOH HOH . F 6 HOH A 102 502 91 HOH HOH . F 6 HOH A 103 503 61 HOH HOH . F 6 HOH A 104 504 30 HOH HOH . F 6 HOH A 105 505 135 HOH HOH . F 6 HOH A 106 506 113 HOH HOH . F 6 HOH A 107 507 86 HOH HOH . F 6 HOH A 108 508 55 HOH HOH . F 6 HOH A 109 509 96 HOH HOH . F 6 HOH A 110 510 123 HOH HOH . F 6 HOH A 111 511 52 HOH HOH . F 6 HOH A 112 512 50 HOH HOH . F 6 HOH A 113 513 89 HOH HOH . F 6 HOH A 114 514 118 HOH HOH . F 6 HOH A 115 515 145 HOH HOH . F 6 HOH A 116 516 153 HOH HOH . F 6 HOH A 117 517 125 HOH HOH . F 6 HOH A 118 518 111 HOH HOH . F 6 HOH A 119 519 93 HOH HOH . F 6 HOH A 120 520 12 HOH HOH . F 6 HOH A 121 521 97 HOH HOH . F 6 HOH A 122 522 82 HOH HOH . F 6 HOH A 123 523 78 HOH HOH . F 6 HOH A 124 524 77 HOH HOH . F 6 HOH A 125 525 158 HOH HOH . F 6 HOH A 126 526 143 HOH HOH . F 6 HOH A 127 527 98 HOH HOH . F 6 HOH A 128 528 150 HOH HOH . F 6 HOH A 129 529 59 HOH HOH . F 6 HOH A 130 530 74 HOH HOH . F 6 HOH A 131 531 28 HOH HOH . F 6 HOH A 132 532 47 HOH HOH . F 6 HOH A 133 533 151 HOH HOH . F 6 HOH A 134 534 165 HOH HOH . F 6 HOH A 135 535 43 HOH HOH . F 6 HOH A 136 536 127 HOH HOH . F 6 HOH A 137 537 42 HOH HOH . F 6 HOH A 138 538 141 HOH HOH . F 6 HOH A 139 539 134 HOH HOH . F 6 HOH A 140 540 138 HOH HOH . F 6 HOH A 141 541 79 HOH HOH . F 6 HOH A 142 542 137 HOH HOH . F 6 HOH A 143 543 103 HOH HOH . F 6 HOH A 144 544 116 HOH HOH . F 6 HOH A 145 545 155 HOH HOH . F 6 HOH A 146 546 126 HOH HOH . F 6 HOH A 147 547 157 HOH HOH . F 6 HOH A 148 548 121 HOH HOH . F 6 HOH A 149 549 101 HOH HOH . F 6 HOH A 150 550 133 HOH HOH . F 6 HOH A 151 551 117 HOH HOH . F 6 HOH A 152 552 139 HOH HOH . F 6 HOH A 153 553 146 HOH HOH . F 6 HOH A 154 554 140 HOH HOH . F 6 HOH A 155 555 132 HOH HOH . F 6 HOH A 156 556 149 HOH HOH . F 6 HOH A 157 557 131 HOH HOH . F 6 HOH A 158 558 163 HOH HOH . F 6 HOH A 159 559 112 HOH HOH . F 6 HOH A 160 560 160 HOH HOH . F 6 HOH A 161 561 162 HOH HOH . F 6 HOH A 162 562 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 5 -4.329 -28.999 -1.609 1 17.47 ? PB ADP 304 A 1 HETATM 2 O O1B ADP . . . E 5 -3.811 -30.145 -2.439 1 19.34 ? O1B ADP 304 A 1 HETATM 3 O O2B ADP . . . E 5 -4.367 -29.288 -0.121 1 16 ? O2B ADP 304 A 1 HETATM 4 O O3B ADP . . . E 5 -3.707 -27.657 -1.918 1 17.56 ? O3B ADP 304 A 1 HETATM 5 P PA ADP . . . E 5 -6.674 -27.67 -2.757 1 18.41 ? PA ADP 304 A 1 HETATM 6 O O1A ADP . . . E 5 -6.15 -27.622 -4.177 1 19.31 ? O1A ADP 304 A 1 HETATM 7 O O2A ADP . . . E 5 -6.688 -26.409 -1.933 1 19.93 ? O2A ADP 304 A 1 HETATM 8 O O3A ADP . . . E 5 -5.898 -28.878 -1.991 1 18.1 ? O3A ADP 304 A 1 HETATM 9 O O5' ADP . . . E 5 -8.183 -28.244 -2.761 1 17.63 ? O5' ADP 304 A 1 HETATM 10 C C5' ADP . . . E 5 -8.487 -29.426 -3.515 1 20.7 ? C5' ADP 304 A 1 HETATM 11 C C4' ADP . . . E 5 -9.884 -29.32 -4.128 1 23.29 ? C4' ADP 304 A 1 HETATM 12 O O4' ADP . . . E 5 -10.859 -29.146 -3.086 1 23.63 ? O4' ADP 304 A 1 HETATM 13 C C3' ADP . . . E 5 -9.985 -28.111 -5.033 1 26.96 ? C3' ADP 304 A 1 HETATM 14 O O3' ADP . . . E 5 -10.722 -28.474 -6.208 1 30.32 ? O3' ADP 304 A 1 HETATM 15 C C2' ADP . . . E 5 -10.812 -27.125 -4.263 1 23.23 ? C2' ADP 304 A 1 HETATM 16 O O2' ADP . . . E 5 -11.615 -26.357 -5.141 1 30.24 ? O2' ADP 304 A 1 HETATM 17 C C1' ADP . . . E 5 -11.68 -28.02 -3.405 1 25.95 ? C1' ADP 304 A 1 HETATM 18 N N9 ADP . . . E 5 -12.036 -27.379 -2.128 1 22.55 ? N9 ADP 304 A 1 HETATM 19 C C8 ADP . . . E 5 -11.169 -27.051 -1.15 1 21.38 ? C8 ADP 304 A 1 HETATM 20 N N7 ADP . . . E 5 -11.811 -26.498 -0.089 1 21.54 ? N7 ADP 304 A 1 HETATM 21 C C5 ADP . . . E 5 -13.13 -26.491 -0.389 1 21.75 ? C5 ADP 304 A 1 HETATM 22 C C6 ADP . . . E 5 -14.371 -26.044 0.273 1 23.98 ? C6 ADP 304 A 1 HETATM 23 N N6 ADP . . . E 5 -14.346 -25.51 1.517 1 21.33 ? N6 ADP 304 A 1 HETATM 24 N N1 ADP . . . E 5 -15.535 -26.224 -0.391 1 23.22 ? N1 ADP 304 A 1 HETATM 25 C C2 ADP . . . E 5 -15.585 -26.755 -1.627 1 24.94 ? C2 ADP 304 A 1 HETATM 26 N N3 ADP . . . E 5 -14.498 -27.175 -2.29 1 23.28 ? N3 ADP 304 A 1 HETATM 27 C C4 ADP . . . E 5 -13.269 -27.072 -1.734 1 25.19 ? C4 ADP 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 27 #