data_7TQB # _model_server_result.job_id rnpaWL9aHsQSfd82zyXbYg _model_server_result.datetime_utc '2024-10-10 22:34:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7TQB # _exptl.entry_id 7TQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.15 _cell.angle_gamma 90 _cell.entry_id 7TQB _cell.length_a 38.426 _cell.length_b 158.884 _cell.length_c 43.142 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 146 H CYS 146 1_555 A SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 139 L CYS 139 1_555 B SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? hydrog WATSON-CRICK hydrog1 C N3 C 1 A C 1 1_555 D N1 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 C 1 A C 1 1_555 D O6 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 C 1 A C 1 1_555 D N2 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 U 2 A U 2 1_555 D N1 DA 12 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 U 2 A U 2 1_555 D N6 DA 12 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 U 3 A U 3 1_555 D N1 DA 11 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O4 U 3 A U 3 1_555 D N6 DA 11 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-DC PAIR' hydrog8 C N2 G 4 A G 4 1_555 D O2 DC 10 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 U 5 A U 5 1_555 D N1 DA 9 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O4 U 5 A U 5 1_555 D N6 DA 9 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 C 6 A C 6 1_555 D N1 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N4 C 6 A C 6 1_555 D O6 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O2 C 6 A C 6 1_555 D N2 DG 8 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N3 U 7 A U 7 1_555 D N1 DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O4 U 7 A U 7 1_555 D N6 DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N1 G 8 A G 8 1_555 D N3 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N2 G 8 A G 8 1_555 D O2 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O6 G 8 A G 8 1_555 D N4 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N1 A 9 A A 9 1_555 D N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N6 A 9 A A 9 1_555 D O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N3 C 10 A C 10 1_555 D N1 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N4 C 10 A C 10 1_555 D O6 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C O2 C 10 A C 10 1_555 D N2 DG 4 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N1 A 11 A A 11 1_555 D N3 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N6 A 11 A A 11 1_555 D O4 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N3 C 12 A C 12 1_555 D N1 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N4 C 12 A C 12 1_555 D O6 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O2 C 12 A C 12 1_555 D N2 DG 2 B DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-DC PAIR' hydrog29 C N2 G 13 A G 13 1_555 D N3 DC 1 B DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 393 n n C1 C2 GOL sing 394 n n C1 H11 GOL sing 395 n n C1 H12 GOL sing 396 n n O1 HO1 GOL sing 397 n n C2 O2 GOL sing 398 n n C2 C3 GOL sing 399 n n C2 H2 GOL sing 400 n n O2 HO2 GOL sing 401 n n C3 O3 GOL sing 402 n n C3 H31 GOL sing 403 n n C3 H32 GOL sing 404 n n O3 HO3 GOL sing 405 n n # _atom_sites.entry_id 7TQB _atom_sites.fract_transf_matrix[1][1] 0.026024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GOL B 1 301 301 GOL GOL . F 6 HOH H 1 301 222 HOH HOH . F 6 HOH H 2 302 231 HOH HOH . F 6 HOH H 3 303 226 HOH HOH . F 6 HOH H 4 304 221 HOH HOH . F 6 HOH H 5 305 232 HOH HOH . F 6 HOH H 6 306 230 HOH HOH . F 6 HOH H 7 307 225 HOH HOH . F 6 HOH H 8 308 223 HOH HOH . F 6 HOH H 9 309 218 HOH HOH . F 6 HOH H 10 310 216 HOH HOH . F 6 HOH H 11 311 235 HOH HOH . F 6 HOH H 12 312 233 HOH HOH . F 6 HOH H 13 313 219 HOH HOH . F 6 HOH H 14 314 220 HOH HOH . F 6 HOH H 15 315 228 HOH HOH . F 6 HOH H 16 316 224 HOH HOH . F 6 HOH H 17 317 311 HOH HOH . F 6 HOH H 18 318 229 HOH HOH . F 6 HOH H 19 319 217 HOH HOH . F 6 HOH H 20 320 227 HOH HOH . G 6 HOH L 1 301 305 HOH HOH . G 6 HOH L 2 302 304 HOH HOH . G 6 HOH L 3 303 312 HOH HOH . G 6 HOH L 4 304 307 HOH HOH . G 6 HOH L 5 305 315 HOH HOH . G 6 HOH L 6 306 306 HOH HOH . G 6 HOH L 7 307 308 HOH HOH . G 6 HOH L 8 308 314 HOH HOH . G 6 HOH L 9 309 309 HOH HOH . G 6 HOH L 10 310 303 HOH HOH . G 6 HOH L 11 311 310 HOH HOH . G 6 HOH L 12 312 302 HOH HOH . G 6 HOH L 13 313 313 HOH HOH . G 6 HOH L 14 314 234 HOH HOH . H 6 HOH A 1 101 14 HOH HOH . I 6 HOH B 1 401 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 16.246 -53.808 12.73 1 27.06 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . E 5 16.678 -52.877 11.741 1 24.92 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . E 5 15.608 -55.026 12.097 1 29.78 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . E 5 16.539 -55.655 11.217 1 31.92 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . E 5 15.107 -56.036 13.107 1 31.52 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . E 5 14.651 -57.23 12.476 1 33.61 ? O3 GOL 301 B 1 HETATM 7 H H11 GOL . . . E 5 15.592 -53.371 13.328 1 32.68 ? H11 GOL 301 B 1 HETATM 8 H H12 GOL . . . E 5 17.022 -54.092 13.273 1 32.68 ? H12 GOL 301 B 1 HETATM 9 H HO1 GOL . . . E 5 17.252 -53.258 11.251 1 30.1 ? HO1 GOL 301 B 1 HETATM 10 H H2 GOL . . . E 5 14.834 -54.716 11.569 1 35.93 ? H2 GOL 301 B 1 HETATM 11 H HO2 GOL . . . E 5 17.214 -55.888 11.674 1 38.5 ? HO2 GOL 301 B 1 HETATM 12 H H31 GOL . . . E 5 14.365 -55.638 13.624 1 38.02 ? H31 GOL 301 B 1 HETATM 13 H H32 GOL . . . E 5 15.838 -56.258 13.734 1 38.02 ? H32 GOL 301 B 1 HETATM 14 H HO3 GOL . . . E 5 14.386 -57.763 13.076 1 40.54 ? HO3 GOL 301 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #