data_7TQI
#
_model_server_result.job_id            DeLyEdulztq_yAOyDVLJig 
_model_server_result.datetime_utc      '2024-11-15 17:45:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tqi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    7TQI 
#
_exptl.entry_id    7TQI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TQI 
_cell.length_a            45.786 
_cell.length_b            74.678 
_cell.length_c            75.18 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TQI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -75.18 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 16 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc2 A SG CYS 98 A CYS 97 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc3 A SG CYS 98 A CYS 97 1_555 C FE1 SFS . A SFS 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc4 A SG CYS 133 A CYS 132 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc5 A SG CYS 133 A CYS 132 1_555 C FE2 SFS . A SFS 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc6 D MG MG . A MG 303 1_555 E O3B ADP . A ADP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc7 D MG MG . A MG 303 1_555 F O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc8 D MG MG . A MG 303 1_555 F O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc9 D MG MG . A MG 303 1_555 F O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc10 D MG MG . A MG 303 1_555 F O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7TQI 
_atom_sites.fract_transf_matrix[1][1]    0.021841 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013391 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013301 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 301 301 SF4 SF4 . 
C 3 SFS A 1 302 302 SFS SFS . 
D 4 MG A 1 303 305 MG MG . 
E 5 ADP A 1 304 306 ADP ADP . 
F 6 HOH A 1 401 49 HOH HOH . 
F 6 HOH A 2 402 55 HOH HOH . 
F 6 HOH A 3 403 132 HOH HOH . 
F 6 HOH A 4 404 122 HOH HOH . 
F 6 HOH A 5 405 96 HOH HOH . 
F 6 HOH A 6 406 38 HOH HOH . 
F 6 HOH A 7 407 37 HOH HOH . 
F 6 HOH A 8 408 81 HOH HOH . 
F 6 HOH A 9 409 47 HOH HOH . 
F 6 HOH A 10 410 116 HOH HOH . 
F 6 HOH A 11 411 131 HOH HOH . 
F 6 HOH A 12 412 46 HOH HOH . 
F 6 HOH A 13 413 86 HOH HOH . 
F 6 HOH A 14 414 74 HOH HOH . 
F 6 HOH A 15 415 28 HOH HOH . 
F 6 HOH A 16 416 104 HOH HOH . 
F 6 HOH A 17 417 63 HOH HOH . 
F 6 HOH A 18 418 136 HOH HOH . 
F 6 HOH A 19 419 143 HOH HOH . 
F 6 HOH A 20 420 33 HOH HOH . 
F 6 HOH A 21 421 16 HOH HOH . 
F 6 HOH A 22 422 6 HOH HOH . 
F 6 HOH A 23 423 56 HOH HOH . 
F 6 HOH A 24 424 73 HOH HOH . 
F 6 HOH A 25 425 101 HOH HOH . 
F 6 HOH A 26 426 121 HOH HOH . 
F 6 HOH A 27 427 52 HOH HOH . 
F 6 HOH A 28 428 8 HOH HOH . 
F 6 HOH A 29 429 3 HOH HOH . 
F 6 HOH A 30 430 43 HOH HOH . 
F 6 HOH A 31 431 4 HOH HOH . 
F 6 HOH A 32 432 71 HOH HOH . 
F 6 HOH A 33 433 67 HOH HOH . 
F 6 HOH A 34 434 36 HOH HOH . 
F 6 HOH A 35 435 78 HOH HOH . 
F 6 HOH A 36 436 30 HOH HOH . 
F 6 HOH A 37 437 21 HOH HOH . 
F 6 HOH A 38 438 7 HOH HOH . 
F 6 HOH A 39 439 20 HOH HOH . 
F 6 HOH A 40 440 22 HOH HOH . 
F 6 HOH A 41 441 144 HOH HOH . 
F 6 HOH A 42 442 5 HOH HOH . 
F 6 HOH A 43 443 80 HOH HOH . 
F 6 HOH A 44 444 15 HOH HOH . 
F 6 HOH A 45 445 14 HOH HOH . 
F 6 HOH A 46 446 77 HOH HOH . 
F 6 HOH A 47 447 62 HOH HOH . 
F 6 HOH A 48 448 89 HOH HOH . 
F 6 HOH A 49 449 2 HOH HOH . 
F 6 HOH A 50 450 13 HOH HOH . 
F 6 HOH A 51 451 60 HOH HOH . 
F 6 HOH A 52 452 109 HOH HOH . 
F 6 HOH A 53 453 114 HOH HOH . 
F 6 HOH A 54 454 34 HOH HOH . 
F 6 HOH A 55 455 29 HOH HOH . 
F 6 HOH A 56 456 17 HOH HOH . 
F 6 HOH A 57 457 83 HOH HOH . 
F 6 HOH A 58 458 91 HOH HOH . 
F 6 HOH A 59 459 18 HOH HOH . 
F 6 HOH A 60 460 45 HOH HOH . 
F 6 HOH A 61 461 12 HOH HOH . 
F 6 HOH A 62 462 1 HOH HOH . 
F 6 HOH A 63 463 19 HOH HOH . 
F 6 HOH A 64 464 24 HOH HOH . 
F 6 HOH A 65 465 11 HOH HOH . 
F 6 HOH A 66 466 53 HOH HOH . 
F 6 HOH A 67 467 25 HOH HOH . 
F 6 HOH A 68 468 9 HOH HOH . 
F 6 HOH A 69 469 51 HOH HOH . 
F 6 HOH A 70 470 32 HOH HOH . 
F 6 HOH A 71 471 39 HOH HOH . 
F 6 HOH A 72 472 23 HOH HOH . 
F 6 HOH A 73 473 79 HOH HOH . 
F 6 HOH A 74 474 82 HOH HOH . 
F 6 HOH A 75 475 92 HOH HOH . 
F 6 HOH A 76 476 54 HOH HOH . 
F 6 HOH A 77 477 106 HOH HOH . 
F 6 HOH A 78 478 75 HOH HOH . 
F 6 HOH A 79 479 27 HOH HOH . 
F 6 HOH A 80 480 42 HOH HOH . 
F 6 HOH A 81 481 107 HOH HOH . 
F 6 HOH A 82 482 108 HOH HOH . 
F 6 HOH A 83 483 68 HOH HOH . 
F 6 HOH A 84 484 85 HOH HOH . 
F 6 HOH A 85 485 120 HOH HOH . 
F 6 HOH A 86 486 110 HOH HOH . 
F 6 HOH A 87 487 59 HOH HOH . 
F 6 HOH A 88 488 57 HOH HOH . 
F 6 HOH A 89 489 31 HOH HOH . 
F 6 HOH A 90 490 41 HOH HOH . 
F 6 HOH A 91 491 94 HOH HOH . 
F 6 HOH A 92 492 137 HOH HOH . 
F 6 HOH A 93 493 138 HOH HOH . 
F 6 HOH A 94 494 102 HOH HOH . 
F 6 HOH A 95 495 69 HOH HOH . 
F 6 HOH A 96 496 58 HOH HOH . 
F 6 HOH A 97 497 40 HOH HOH . 
F 6 HOH A 98 498 10 HOH HOH . 
F 6 HOH A 99 499 35 HOH HOH . 
F 6 HOH A 100 500 111 HOH HOH . 
F 6 HOH A 101 501 50 HOH HOH . 
F 6 HOH A 102 502 61 HOH HOH . 
F 6 HOH A 103 503 66 HOH HOH . 
F 6 HOH A 104 504 118 HOH HOH . 
F 6 HOH A 105 505 99 HOH HOH . 
F 6 HOH A 106 506 134 HOH HOH . 
F 6 HOH A 107 507 26 HOH HOH . 
F 6 HOH A 108 508 145 HOH HOH . 
F 6 HOH A 109 509 65 HOH HOH . 
F 6 HOH A 110 510 127 HOH HOH . 
F 6 HOH A 111 511 142 HOH HOH . 
F 6 HOH A 112 512 126 HOH HOH . 
F 6 HOH A 113 513 130 HOH HOH . 
F 6 HOH A 114 514 100 HOH HOH . 
F 6 HOH A 115 515 119 HOH HOH . 
F 6 HOH A 116 516 133 HOH HOH . 
F 6 HOH A 117 517 139 HOH HOH . 
F 6 HOH A 118 518 87 HOH HOH . 
F 6 HOH A 119 519 98 HOH HOH . 
F 6 HOH A 120 520 124 HOH HOH . 
F 6 HOH A 121 521 129 HOH HOH . 
F 6 HOH A 122 522 64 HOH HOH . 
F 6 HOH A 123 523 44 HOH HOH . 
F 6 HOH A 124 524 125 HOH HOH . 
F 6 HOH A 125 525 117 HOH HOH . 
F 6 HOH A 126 526 103 HOH HOH . 
F 6 HOH A 127 527 140 HOH HOH . 
F 6 HOH A 128 528 97 HOH HOH . 
F 6 HOH A 129 529 141 HOH HOH . 
F 6 HOH A 130 530 88 HOH HOH . 
F 6 HOH A 131 531 90 HOH HOH . 
F 6 HOH A 132 532 95 HOH HOH . 
F 6 HOH A 133 533 128 HOH HOH . 
F 6 HOH A 134 534 123 HOH HOH . 
F 6 HOH A 135 535 113 HOH HOH . 
F 6 HOH A 136 536 105 HOH HOH . 
F 6 HOH A 137 537 112 HOH HOH . 
F 6 HOH A 138 538 76 HOH HOH . 
F 6 HOH A 139 539 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . E 5 -18.525 -1.677 -29.38 1 13.76 ? PB ADP 304 A 1 
HETATM 2 O O1B ADP . . . E 5 -19.038 -2.503 -30.541 1 16.61 ? O1B ADP 304 A 1 
HETATM 3 O O2B ADP . . . E 5 -18.525 -0.18 -29.669 1 13.48 ? O2B ADP 304 A 1 
HETATM 4 O O3B ADP . . . E 5 -19.152 -1.989 -28.036 1 13.58 ? O3B ADP 304 A 1 
HETATM 5 P PA ADP . . . E 5 -16.192 -2.807 -28.07 1 15 ? PA ADP 304 A 1 
HETATM 6 O O1A ADP . . . E 5 -16.697 -4.235 -28.016 1 15.53 ? O1A ADP 304 A 1 
HETATM 7 O O2A ADP . . . E 5 -16.215 -1.994 -26.801 1 16.17 ? O2A ADP 304 A 1 
HETATM 8 O O3A ADP . . . E 5 -16.958 -1.999 -29.255 1 15.15 ? O3A ADP 304 A 1 
HETATM 9 O O5' ADP . . . E 5 -14.675 -2.809 -28.584 1 15.73 ? O5' ADP 304 A 1 
HETATM 10 C C5' ADP . . . E 5 -14.361 -3.444 -29.83 1 17.76 ? C5' ADP 304 A 1 
HETATM 11 C C4' ADP . . . E 5 -12.991 -4.116 -29.717 1 18.93 ? C4' ADP 304 A 1 
HETATM 12 O O4' ADP . . . E 5 -11.994 -3.111 -29.528 1 19.79 ? O4' ADP 304 A 1 
HETATM 13 C C3' ADP . . . E 5 -12.9 -5.043 -28.522 1 21.16 ? C3' ADP 304 A 1 
HETATM 14 O O3' ADP . . . E 5 -12.156 -6.232 -28.869 1 25.46 ? O3' ADP 304 A 1 
HETATM 15 C C2' ADP . . . E 5 -12.101 -4.266 -27.517 1 18 ? C2' ADP 304 A 1 
HETATM 16 O O2' ADP . . . E 5 -11.36 -5.102 -26.632 1 24.03 ? O2' ADP 304 A 1 
HETATM 17 C C1' ADP . . . E 5 -11.188 -3.436 -28.406 1 19.76 ? C1' ADP 304 A 1 
HETATM 18 N N9 ADP . . . E 5 -10.807 -2.166 -27.787 1 18.63 ? N9 ADP 304 A 1 
HETATM 19 C C8 ADP . . . E 5 -11.672 -1.172 -27.49 1 17.06 ? C8 ADP 304 A 1 
HETATM 20 N N7 ADP . . . E 5 -11.011 -0.129 -26.945 1 18.27 ? N7 ADP 304 A 1 
HETATM 21 C C5 ADP . . . E 5 -9.7 -0.456 -26.893 1 19.52 ? C5 ADP 304 A 1 
HETATM 22 C C6 ADP . . . E 5 -8.473 0.195 -26.42 1 21.74 ? C6 ADP 304 A 1 
HETATM 23 N N6 ADP . . . E 5 -8.504 1.435 -25.906 1 19.12 ? N6 ADP 304 A 1 
HETATM 24 N N1 ADP . . . E 5 -7.313 -0.478 -26.541 1 19.08 ? N1 ADP 304 A 1 
HETATM 25 C C2 ADP . . . E 5 -7.271 -1.724 -27.058 1 19.54 ? C2 ADP 304 A 1 
HETATM 26 N N3 ADP . . . E 5 -8.348 -2.382 -27.519 1 19.78 ? N3 ADP 304 A 1 
HETATM 27 C C4 ADP . . . E 5 -9.575 -1.8 -27.452 1 18.52 ? C4 ADP 304 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           27 
#