data_7TR0 # _model_server_result.job_id nSa186gPNNiwRXHBC7AZcw _model_server_result.datetime_utc '2024-11-29 17:00:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tr0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 7TR0 # _exptl.entry_id 7TR0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7TR0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 GDP B 1 501 501 GDP GDP . G 7 TA1 B 1 502 502 TA1 TA1 . H 8 ANP K 1 501 807 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 8 165.411 139.507 172.209 1 123.99 ? PG ANP 501 K 1 HETATM 2 O O1G ANP . . . H 8 164.957 139.051 173.573 1 118.27 ? O1G ANP 501 K 1 HETATM 3 O O2G ANP . . . H 8 164.912 140.914 172.012 1 117.91 ? O2G ANP 501 K 1 HETATM 4 O O3G ANP . . . H 8 166.915 139.527 172.19 1 115.34 ? O3G ANP 501 K 1 HETATM 5 P PB ANP . . . H 8 164.556 136.92 171.363 1 120.77 ? PB ANP 501 K 1 HETATM 6 O O1B ANP . . . H 8 165.761 136.292 172.005 1 117.33 ? O1B ANP 501 K 1 HETATM 7 O O2B ANP . . . H 8 163.209 136.696 171.99 1 116.97 ? O2B ANP 501 K 1 HETATM 8 N N3B ANP . . . H 8 164.826 138.5 171.064 1 117.23 ? N3B ANP 501 K 1 HETATM 9 P PA ANP . . . H 8 164.238 134.597 169.694 1 122.33 ? PA ANP 501 K 1 HETATM 10 O O1A ANP . . . H 8 165.336 133.837 170.359 1 115.86 ? O1A ANP 501 K 1 HETATM 11 O O2A ANP . . . H 8 162.828 134.271 170.06 1 118.72 ? O2A ANP 501 K 1 HETATM 12 O O3A ANP . . . H 8 164.467 136.162 169.957 1 116.12 ? O3A ANP 501 K 1 HETATM 13 O O5' ANP . . . H 8 164.414 134.508 168.102 1 117.94 ? O5' ANP 501 K 1 HETATM 14 C C5' ANP . . . H 8 163.305 134.02 167.304 1 115.83 ? C5' ANP 501 K 1 HETATM 15 C C4' ANP . . . H 8 163.398 132.519 167.164 1 117.38 ? C4' ANP 501 K 1 HETATM 16 O O4' ANP . . . H 8 164.515 132.177 166.303 1 116.87 ? O4' ANP 501 K 1 HETATM 17 C C3' ANP . . . H 8 163.654 131.719 168.446 1 118.34 ? C3' ANP 501 K 1 HETATM 18 O O3' ANP . . . H 8 162.458 131.499 169.184 1 114.94 ? O3' ANP 501 K 1 HETATM 19 C C2' ANP . . . H 8 164.245 130.433 167.869 1 117.86 ? C2' ANP 501 K 1 HETATM 20 O O2' ANP . . . H 8 163.255 129.588 167.324 1 115.91 ? O2' ANP 501 K 1 HETATM 21 C C1' ANP . . . H 8 165.142 131.003 166.775 1 118.02 ? C1' ANP 501 K 1 HETATM 22 N N9 ANP . . . H 8 166.477 131.358 167.231 1 117.05 ? N9 ANP 501 K 1 HETATM 23 C C8 ANP . . . H 8 166.908 132.572 167.703 1 115.3 ? C8 ANP 501 K 1 HETATM 24 N N7 ANP . . . H 8 168.179 132.561 168.034 1 115.26 ? N7 ANP 501 K 1 HETATM 25 C C5 ANP . . . H 8 168.601 131.265 167.765 1 116.71 ? C5 ANP 501 K 1 HETATM 26 C C6 ANP . . . H 8 169.844 130.62 167.903 1 116.41 ? C6 ANP 501 K 1 HETATM 27 N N6 ANP . . . H 8 170.938 131.217 168.367 1 115.4 ? N6 ANP 501 K 1 HETATM 28 N N1 ANP . . . H 8 169.912 129.318 167.54 1 116.55 ? N1 ANP 501 K 1 HETATM 29 C C2 ANP . . . H 8 168.805 128.723 167.075 1 115.79 ? C2 ANP 501 K 1 HETATM 30 N N3 ANP . . . H 8 167.587 129.228 166.901 1 116.12 ? N3 ANP 501 K 1 HETATM 31 C C4 ANP . . . H 8 167.555 130.517 167.27 1 116.67 ? C4 ANP 501 K 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #