data_7TR4 # _model_server_result.job_id F_SPIj20jGQH4OYalXu9mQ _model_server_result.datetime_utc '2024-11-05 01:19:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tr4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 7TR4 # _exptl.entry_id 7TR4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.67 _cell.angle_gamma 90 _cell.entry_id 7TR4 _cell.length_a 267.19 _cell.length_b 46.498 _cell.length_c 78.513 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 24 B CYS 25 1_555 B SG CYS 79 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 90 H CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 137 H CYS 137 1_555 C SG CYS 196 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 D SG CYS 22 L CYS 22 1_555 D SG CYS 96 L CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 146 L CYS 146 1_555 D SG CYS 202 L CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7TR4 _atom_sites.fract_transf_matrix[1][1] 0.003743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000638 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GOL A 1 301 301 GOL GOL . G 6 GOL A 1 302 302 GOL GOL . H 6 GOL H 1 301 301 GOL GOL . I 7 HOH A 1 401 79 HOH HOH . I 7 HOH A 2 402 57 HOH HOH . I 7 HOH A 3 403 33 HOH HOH . I 7 HOH A 4 404 41 HOH HOH . I 7 HOH A 5 405 34 HOH HOH . I 7 HOH A 6 406 60 HOH HOH . I 7 HOH A 7 407 32 HOH HOH . I 7 HOH A 8 408 58 HOH HOH . I 7 HOH A 9 409 37 HOH HOH . I 7 HOH A 10 410 54 HOH HOH . I 7 HOH A 11 411 67 HOH HOH . I 7 HOH A 12 412 74 HOH HOH . I 7 HOH A 13 413 31 HOH HOH . I 7 HOH A 14 414 69 HOH HOH . I 7 HOH A 15 415 30 HOH HOH . I 7 HOH A 16 416 94 HOH HOH . I 7 HOH A 17 417 40 HOH HOH . I 7 HOH A 18 418 98 HOH HOH . I 7 HOH A 19 419 81 HOH HOH . I 7 HOH A 20 420 2 HOH HOH . I 7 HOH A 21 421 84 HOH HOH . I 7 HOH A 22 422 1 HOH HOH . I 7 HOH A 23 423 13 HOH HOH . I 7 HOH A 24 424 38 HOH HOH . I 7 HOH A 25 425 64 HOH HOH . I 7 HOH A 26 426 52 HOH HOH . I 7 HOH A 27 427 101 HOH HOH . I 7 HOH A 28 428 43 HOH HOH . I 7 HOH A 29 429 108 HOH HOH . I 7 HOH A 30 430 90 HOH HOH . I 7 HOH A 31 431 73 HOH HOH . I 7 HOH A 32 432 44 HOH HOH . I 7 HOH A 33 433 35 HOH HOH . I 7 HOH A 34 434 27 HOH HOH . I 7 HOH A 35 435 56 HOH HOH . I 7 HOH A 36 436 93 HOH HOH . I 7 HOH A 37 437 39 HOH HOH . I 7 HOH A 38 438 36 HOH HOH . I 7 HOH A 39 439 70 HOH HOH . I 7 HOH A 40 440 51 HOH HOH . I 7 HOH A 41 441 65 HOH HOH . I 7 HOH A 42 442 75 HOH HOH . I 7 HOH A 43 443 66 HOH HOH . I 7 HOH A 44 444 76 HOH HOH . I 7 HOH A 45 445 99 HOH HOH . I 7 HOH A 46 446 68 HOH HOH . I 7 HOH A 47 447 77 HOH HOH . I 7 HOH A 48 448 78 HOH HOH . J 7 HOH B 1 101 7 HOH HOH . J 7 HOH B 2 102 4 HOH HOH . J 7 HOH B 3 103 97 HOH HOH . J 7 HOH B 4 104 55 HOH HOH . J 7 HOH B 5 105 104 HOH HOH . J 7 HOH B 6 106 3 HOH HOH . J 7 HOH B 7 107 110 HOH HOH . J 7 HOH B 8 108 86 HOH HOH . J 7 HOH B 9 109 5 HOH HOH . J 7 HOH B 10 110 87 HOH HOH . J 7 HOH B 11 111 6 HOH HOH . K 7 HOH H 1 401 88 HOH HOH . K 7 HOH H 2 402 71 HOH HOH . K 7 HOH H 3 403 72 HOH HOH . K 7 HOH H 4 404 42 HOH HOH . K 7 HOH H 5 405 96 HOH HOH . K 7 HOH H 6 406 92 HOH HOH . K 7 HOH H 7 407 95 HOH HOH . K 7 HOH H 8 408 106 HOH HOH . K 7 HOH H 9 409 103 HOH HOH . K 7 HOH H 10 410 8 HOH HOH . K 7 HOH H 11 411 10 HOH HOH . K 7 HOH H 12 412 89 HOH HOH . K 7 HOH H 13 413 14 HOH HOH . K 7 HOH H 14 414 9 HOH HOH . K 7 HOH H 15 415 50 HOH HOH . L 7 HOH L 1 301 100 HOH HOH . L 7 HOH L 2 302 23 HOH HOH . L 7 HOH L 3 303 17 HOH HOH . L 7 HOH L 4 304 45 HOH HOH . L 7 HOH L 5 305 53 HOH HOH . L 7 HOH L 6 306 63 HOH HOH . L 7 HOH L 7 307 62 HOH HOH . L 7 HOH L 8 308 15 HOH HOH . L 7 HOH L 9 309 12 HOH HOH . L 7 HOH L 10 310 49 HOH HOH . L 7 HOH L 11 311 102 HOH HOH . L 7 HOH L 12 312 25 HOH HOH . L 7 HOH L 13 313 19 HOH HOH . L 7 HOH L 14 314 22 HOH HOH . L 7 HOH L 15 315 24 HOH HOH . L 7 HOH L 16 316 107 HOH HOH . L 7 HOH L 17 317 11 HOH HOH . L 7 HOH L 18 318 80 HOH HOH . L 7 HOH L 19 319 59 HOH HOH . L 7 HOH L 20 320 85 HOH HOH . L 7 HOH L 21 321 28 HOH HOH . L 7 HOH L 22 322 48 HOH HOH . L 7 HOH L 23 323 18 HOH HOH . L 7 HOH L 24 324 61 HOH HOH . L 7 HOH L 25 325 21 HOH HOH . L 7 HOH L 26 326 109 HOH HOH . L 7 HOH L 27 327 26 HOH HOH . L 7 HOH L 28 328 82 HOH HOH . L 7 HOH L 29 329 46 HOH HOH . L 7 HOH L 30 330 105 HOH HOH . L 7 HOH L 31 331 20 HOH HOH . L 7 HOH L 32 332 16 HOH HOH . L 7 HOH L 33 333 47 HOH HOH . L 7 HOH L 34 334 83 HOH HOH . M 7 HOH P 1 101 91 HOH HOH . M 7 HOH P 2 102 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 -55.231 -2.424 -24.743 1 55.02 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . F 6 -55.679 -3.625 -24.195 1 53.61 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . F 6 -56.3 -1.353 -24.428 1 52.08 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . F 6 -57.541 -1.691 -24.945 1 45.61 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . F 6 -56.318 -1.254 -22.887 1 41.35 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . F 6 -56.78 0.02 -22.571 1 38.95 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 128 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #