data_7TRM # _model_server_result.job_id 7Mhrw0rboSOzWL3tQ8JHFA _model_server_result.datetime_utc '2024-10-11 02:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7trm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7TRM # _exptl.entry_id 7TRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7TRM _cell.length_a 104.71 _cell.length_b 104.71 _cell.length_c 27.132 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall 'P 3 2"' _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 54 A CYS 306 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A SG CYS 57 A CYS 309 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A NE2 HIS 74 A HIS 326 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 A SG CYS 81 A CYS 333 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7TRM _atom_sites.fract_transf_matrix[1][1] 0.00955 _atom_sites.fract_transf_matrix[1][2] 0.005514 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.036857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 EDO A 1 402 2 EDO EDO . D 3 EDO A 1 403 3 EDO EDO . E 3 EDO A 1 404 4 EDO EDO . F 4 IUN A 1 405 1 IUN LIG . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 21 HOH HOH . G 5 HOH A 3 503 20 HOH HOH . G 5 HOH A 4 504 31 HOH HOH . G 5 HOH A 5 505 27 HOH HOH . G 5 HOH A 6 506 30 HOH HOH . G 5 HOH A 7 507 38 HOH HOH . G 5 HOH A 8 508 12 HOH HOH . G 5 HOH A 9 509 5 HOH HOH . G 5 HOH A 10 510 6 HOH HOH . G 5 HOH A 11 511 7 HOH HOH . G 5 HOH A 12 512 32 HOH HOH . G 5 HOH A 13 513 11 HOH HOH . G 5 HOH A 14 514 15 HOH HOH . G 5 HOH A 15 515 14 HOH HOH . G 5 HOH A 16 516 25 HOH HOH . G 5 HOH A 17 517 44 HOH HOH . G 5 HOH A 18 518 8 HOH HOH . G 5 HOH A 19 519 26 HOH HOH . G 5 HOH A 20 520 2 HOH HOH . G 5 HOH A 21 521 43 HOH HOH . G 5 HOH A 22 522 3 HOH HOH . G 5 HOH A 23 523 23 HOH HOH . G 5 HOH A 24 524 19 HOH HOH . G 5 HOH A 25 525 13 HOH HOH . G 5 HOH A 26 526 45 HOH HOH . G 5 HOH A 27 527 17 HOH HOH . G 5 HOH A 28 528 37 HOH HOH . G 5 HOH A 29 529 4 HOH HOH . G 5 HOH A 30 530 36 HOH HOH . G 5 HOH A 31 531 34 HOH HOH . G 5 HOH A 32 532 9 HOH HOH . G 5 HOH A 33 533 16 HOH HOH . G 5 HOH A 34 534 35 HOH HOH . G 5 HOH A 35 535 10 HOH HOH . G 5 HOH A 36 536 42 HOH HOH . G 5 HOH A 37 537 22 HOH HOH . G 5 HOH A 38 538 18 HOH HOH . G 5 HOH A 39 539 46 HOH HOH . G 5 HOH A 40 540 28 HOH HOH . G 5 HOH A 41 541 40 HOH HOH . G 5 HOH A 42 542 39 HOH HOH . G 5 HOH A 43 543 29 HOH HOH . G 5 HOH A 44 544 33 HOH HOH . G 5 HOH A 45 545 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -3.631 -33.19 -6.016 1 45.38 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 3 -4.154 -34.434 -5.501 1 40.83 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 3 -4.766 -32.224 -6.369 1 47.93 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 3 -5.396 -31.722 -5.179 1 47.35 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #