data_7TS9 # _model_server_result.job_id VvSjGKuckCSJEUfqgwryKQ _model_server_result.datetime_utc '2024-10-18 17:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ts9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 7TS9 # _exptl.entry_id 7TS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.289 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[3-(dimethylamino)propyl]-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TS9 _cell.length_a 49.038 _cell.length_b 114.502 _cell.length_c 164.372 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -49.038 0 82.186 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? # _chem_comp.formula 'C11 H19 N3' _chem_comp.formula_weight 193.289 _chem_comp.id KL0 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[3-(dimethylamino)propyl]-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C04 KL0 sing 294 n n C12 N11 KL0 sing 295 n n C04 C05 KL0 doub 296 n y C04 C03 KL0 sing 297 n y C05 C06 KL0 sing 298 n y N11 C13 KL0 sing 299 n n N11 C10 KL0 sing 300 n n C03 C02 KL0 doub 301 n y C06 C08 KL0 sing 302 n n C06 N01 KL0 doub 303 n y C08 C09 KL0 sing 304 n n C09 C10 KL0 sing 305 n n C02 N01 KL0 sing 306 n y C02 N02 KL0 sing 307 n n C10 H1 KL0 sing 308 n n C10 H2 KL0 sing 309 n n C03 H3 KL0 sing 310 n n C05 H4 KL0 sing 311 n n C07 H5 KL0 sing 312 n n C07 H6 KL0 sing 313 n n C07 H7 KL0 sing 314 n n C08 H8 KL0 sing 315 n n C08 H9 KL0 sing 316 n n C09 H10 KL0 sing 317 n n C09 H11 KL0 sing 318 n n C12 H12 KL0 sing 319 n n C12 H13 KL0 sing 320 n n C12 H14 KL0 sing 321 n n C13 H15 KL0 sing 322 n n C13 H16 KL0 sing 323 n n C13 H17 KL0 sing 324 n n N02 H18 KL0 sing 325 n n N02 H19 KL0 sing 326 n n # _atom_sites.entry_id 7TS9 _atom_sites.fract_transf_matrix[1][1] 0.020392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 KL0 A 1 803 800 KL0 6V8 . E 5 ACT A 1 804 860 ACT ACT . F 6 ZN A 1 805 900 ZN ZN . G 7 HOH A 1 901 57 HOH HOH . G 7 HOH A 2 902 58 HOH HOH . G 7 HOH A 3 903 133 HOH HOH . G 7 HOH A 4 904 106 HOH HOH . G 7 HOH A 5 905 62 HOH HOH . G 7 HOH A 6 906 59 HOH HOH . G 7 HOH A 7 907 78 HOH HOH . G 7 HOH A 8 908 56 HOH HOH . G 7 HOH A 9 909 67 HOH HOH . G 7 HOH A 10 910 22 HOH HOH . G 7 HOH A 11 911 131 HOH HOH . G 7 HOH A 12 912 99 HOH HOH . G 7 HOH A 13 913 69 HOH HOH . G 7 HOH A 14 914 92 HOH HOH . G 7 HOH A 15 915 82 HOH HOH . G 7 HOH A 16 916 25 HOH HOH . G 7 HOH A 17 917 38 HOH HOH . G 7 HOH A 18 918 23 HOH HOH . G 7 HOH A 19 919 98 HOH HOH . G 7 HOH A 20 920 93 HOH HOH . G 7 HOH A 21 921 51 HOH HOH . G 7 HOH A 22 922 20 HOH HOH . G 7 HOH A 23 923 124 HOH HOH . G 7 HOH A 24 924 47 HOH HOH . G 7 HOH A 25 925 49 HOH HOH . G 7 HOH A 26 926 39 HOH HOH . G 7 HOH A 27 927 95 HOH HOH . G 7 HOH A 28 928 33 HOH HOH . G 7 HOH A 29 929 118 HOH HOH . G 7 HOH A 30 930 110 HOH HOH . G 7 HOH A 31 931 24 HOH HOH . G 7 HOH A 32 932 31 HOH HOH . G 7 HOH A 33 933 52 HOH HOH . G 7 HOH A 34 934 11 HOH HOH . G 7 HOH A 35 935 97 HOH HOH . G 7 HOH A 36 936 68 HOH HOH . G 7 HOH A 37 937 14 HOH HOH . G 7 HOH A 38 938 21 HOH HOH . G 7 HOH A 39 939 9 HOH HOH . G 7 HOH A 40 940 87 HOH HOH . G 7 HOH A 41 941 10 HOH HOH . G 7 HOH A 42 942 53 HOH HOH . G 7 HOH A 43 943 89 HOH HOH . G 7 HOH A 44 944 13 HOH HOH . G 7 HOH A 45 945 119 HOH HOH . G 7 HOH A 46 946 77 HOH HOH . G 7 HOH A 47 947 17 HOH HOH . G 7 HOH A 48 948 91 HOH HOH . G 7 HOH A 49 949 6 HOH HOH . G 7 HOH A 50 950 26 HOH HOH . G 7 HOH A 51 951 109 HOH HOH . G 7 HOH A 52 952 75 HOH HOH . G 7 HOH A 53 953 134 HOH HOH . G 7 HOH A 54 954 1 HOH HOH . G 7 HOH A 55 955 8 HOH HOH . G 7 HOH A 56 956 86 HOH HOH . G 7 HOH A 57 957 37 HOH HOH . G 7 HOH A 58 958 28 HOH HOH . G 7 HOH A 59 959 5 HOH HOH . G 7 HOH A 60 960 40 HOH HOH . G 7 HOH A 61 961 128 HOH HOH . G 7 HOH A 62 962 112 HOH HOH . G 7 HOH A 63 963 18 HOH HOH . G 7 HOH A 64 964 88 HOH HOH . G 7 HOH A 65 965 4 HOH HOH . G 7 HOH A 66 966 94 HOH HOH . G 7 HOH A 67 967 43 HOH HOH . G 7 HOH A 68 968 50 HOH HOH . G 7 HOH A 69 969 90 HOH HOH . G 7 HOH A 70 970 44 HOH HOH . G 7 HOH A 71 971 60 HOH HOH . G 7 HOH A 72 972 54 HOH HOH . G 7 HOH A 73 973 19 HOH HOH . G 7 HOH A 74 974 2 HOH HOH . G 7 HOH A 75 975 61 HOH HOH . G 7 HOH A 76 976 101 HOH HOH . G 7 HOH A 77 977 83 HOH HOH . G 7 HOH A 78 978 117 HOH HOH . G 7 HOH A 79 979 104 HOH HOH . G 7 HOH A 80 980 15 HOH HOH . G 7 HOH A 81 981 41 HOH HOH . G 7 HOH A 82 982 34 HOH HOH . G 7 HOH A 83 983 132 HOH HOH . G 7 HOH A 84 984 79 HOH HOH . G 7 HOH A 85 985 42 HOH HOH . G 7 HOH A 86 986 55 HOH HOH . G 7 HOH A 87 987 48 HOH HOH . G 7 HOH A 88 988 74 HOH HOH . G 7 HOH A 89 989 116 HOH HOH . G 7 HOH A 90 990 114 HOH HOH . G 7 HOH A 91 991 70 HOH HOH . G 7 HOH A 92 992 81 HOH HOH . G 7 HOH A 93 993 120 HOH HOH . G 7 HOH A 94 994 121 HOH HOH . G 7 HOH A 95 995 72 HOH HOH . G 7 HOH A 96 996 45 HOH HOH . G 7 HOH A 97 997 71 HOH HOH . G 7 HOH A 98 998 63 HOH HOH . G 7 HOH A 99 999 96 HOH HOH . G 7 HOH A 100 1000 7 HOH HOH . G 7 HOH A 101 1001 135 HOH HOH . G 7 HOH A 102 1002 122 HOH HOH . G 7 HOH A 103 1003 64 HOH HOH . G 7 HOH A 104 1004 32 HOH HOH . G 7 HOH A 105 1005 29 HOH HOH . G 7 HOH A 106 1006 103 HOH HOH . G 7 HOH A 107 1007 27 HOH HOH . G 7 HOH A 108 1008 127 HOH HOH . G 7 HOH A 109 1009 84 HOH HOH . G 7 HOH A 110 1010 115 HOH HOH . G 7 HOH A 111 1011 100 HOH HOH . G 7 HOH A 112 1012 80 HOH HOH . G 7 HOH A 113 1013 111 HOH HOH . G 7 HOH A 114 1014 126 HOH HOH . G 7 HOH A 115 1015 76 HOH HOH . G 7 HOH A 116 1016 30 HOH HOH . G 7 HOH A 117 1017 125 HOH HOH . G 7 HOH A 118 1018 66 HOH HOH . G 7 HOH A 119 1019 3 HOH HOH . G 7 HOH A 120 1020 46 HOH HOH . G 7 HOH A 121 1021 130 HOH HOH . G 7 HOH A 122 1022 113 HOH HOH . G 7 HOH A 123 1023 107 HOH HOH . G 7 HOH A 124 1024 35 HOH HOH . G 7 HOH A 125 1025 105 HOH HOH . G 7 HOH A 126 1026 108 HOH HOH . G 7 HOH A 127 1027 65 HOH HOH . G 7 HOH A 128 1028 129 HOH HOH . G 7 HOH A 129 1029 12 HOH HOH . G 7 HOH A 130 1030 73 HOH HOH . G 7 HOH A 131 1031 16 HOH HOH . G 7 HOH A 132 1032 36 HOH HOH . G 7 HOH A 133 1033 123 HOH HOH . G 7 HOH A 134 1034 85 HOH HOH . G 7 HOH A 135 1035 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 KL0 . . . D 4 -20.444 -1.373 24.305 1 65.27 ? C10 KL0 803 A 1 HETATM 2 C C02 KL0 . . . D 4 -25.945 0.246 23.205 1 52.69 ? C02 KL0 803 A 1 HETATM 3 C C03 KL0 . . . D 4 -26.504 -0.546 22.207 1 46.1 ? C03 KL0 803 A 1 HETATM 4 C C04 KL0 . . . D 4 -25.68 -1.374 21.461 1 42.97 ? C04 KL0 803 A 1 HETATM 5 C C05 KL0 . . . D 4 -24.317 -1.401 21.7 1 57.3 ? C05 KL0 803 A 1 HETATM 6 C C06 KL0 . . . D 4 -23.809 -0.597 22.724 1 67.28 ? C06 KL0 803 A 1 HETATM 7 C C07 KL0 . . . D 4 -26.287 -2.25 20.387 1 32.74 ? C07 KL0 803 A 1 HETATM 8 C C08 KL0 . . . D 4 -22.334 -0.572 23.027 1 71.61 ? C08 KL0 803 A 1 HETATM 9 C C09 KL0 . . . D 4 -21.937 -1.577 24.091 1 57.9 ? C09 KL0 803 A 1 HETATM 10 C C12 KL0 . . . D 4 -19.963 -3.663 24.761 1 63.66 ? C12 KL0 803 A 1 HETATM 11 C C13 KL0 . . . D 4 -18.526 -1.973 25.608 1 77.5 ? C13 KL0 803 A 1 HETATM 12 N N01 KL0 . . . D 4 -24.62 0.21 23.44 1 56.98 ? N01 KL0 803 A 1 HETATM 13 N N02 KL0 . . . D 4 -26.737 1.065 23.931 1 51 ? N02 KL0 803 A 1 HETATM 14 N N11 KL0 . . . D 4 -19.924 -2.311 25.312 1 68.88 ? N11 KL0 803 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #