data_7TSA # _model_server_result.job_id 47uTza8AiLja0hskA9-p6Q _model_server_result.datetime_utc '2024-11-26 22:52:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tsa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7TSA # _exptl.entry_id 7TSA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TSA _cell.length_a 48.545 _cell.length_b 114.161 _cell.length_c 163.961 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -48.545 0 81.9805 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 168 n n CHA C4D HEM doub 169 n n CHA HHA HEM sing 170 n n CHB C4A HEM sing 171 n n CHB C1B HEM doub 172 n n CHB HHB HEM sing 173 n n CHC C4B HEM sing 174 n n CHC C1C HEM doub 175 n n CHC HHC HEM sing 176 n n CHD C4C HEM doub 177 n n CHD C1D HEM sing 178 n n CHD HHD HEM sing 179 n n C1A C2A HEM doub 180 n y C1A NA HEM sing 181 n y C2A C3A HEM sing 182 n y C2A CAA HEM sing 183 n n C3A C4A HEM doub 184 n y C3A CMA HEM sing 185 n n C4A NA HEM sing 186 n y CMA HMA HEM sing 187 n n CMA HMAA HEM sing 188 n n CMA HMAB HEM sing 189 n n CAA CBA HEM sing 190 n n CAA HAA HEM sing 191 n n CAA HAAA HEM sing 192 n n CBA CGA HEM sing 193 n n CBA HBA HEM sing 194 n n CBA HBAA HEM sing 195 n n CGA O1A HEM doub 196 n n CGA O2A HEM sing 197 n n C1B C2B HEM sing 198 n n C1B NB HEM sing 199 n n C2B C3B HEM doub 200 n n C2B CMB HEM sing 201 n n C3B C4B HEM sing 202 n n C3B CAB HEM sing 203 n n C4B NB HEM doub 204 n n CMB HMB HEM sing 205 n n CMB HMBA HEM sing 206 n n CMB HMBB HEM sing 207 n n CAB CBB HEM doub 208 n n CAB HAB HEM sing 209 n n CBB HBB HEM sing 210 n n CBB HBBA HEM sing 211 n n C1C C2C HEM sing 212 n y C1C NC HEM sing 213 n y C2C C3C HEM doub 214 n y C2C CMC HEM sing 215 n n C3C C4C HEM sing 216 n y C3C CAC HEM sing 217 n n C4C NC HEM sing 218 n y CMC HMC HEM sing 219 n n CMC HMCA HEM sing 220 n n CMC HMCB HEM sing 221 n n CAC CBC HEM doub 222 n n CAC HAC HEM sing 223 n n CBC HBC HEM sing 224 n n CBC HBCA HEM sing 225 n n C1D C2D HEM sing 226 n n C1D ND HEM doub 227 n n C2D C3D HEM doub 228 n n C2D CMD HEM sing 229 n n C3D C4D HEM sing 230 n n C3D CAD HEM sing 231 n n C4D ND HEM sing 232 n n CMD HMD HEM sing 233 n n CMD HMDA HEM sing 234 n n CMD HMDB HEM sing 235 n n CAD CBD HEM sing 236 n n CAD HAD HEM sing 237 n n CAD HADA HEM sing 238 n n CBD CGD HEM sing 239 n n CBD HBD HEM sing 240 n n CBD HBDA HEM sing 241 n n CGD O1D HEM doub 242 n n CGD O2D HEM sing 243 n n O2A H2A HEM sing 244 n n O2D H2D HEM sing 245 n n FE NA HEM sing 246 n n FE NB HEM sing 247 n n FE NC HEM sing 248 n n FE ND HEM sing 249 n n # _atom_sites.entry_id 7TSA _atom_sites.fract_transf_matrix[1][1] 0.020599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 KMI A 1 803 800 KMI 5V1 . E 5 ACT A 1 804 860 ACT ACT . F 6 ZN A 1 805 900 ZN ZN . G 7 HOH A 1 901 20 HOH HOH . G 7 HOH A 2 902 23 HOH HOH . G 7 HOH A 3 903 24 HOH HOH . G 7 HOH A 4 904 30 HOH HOH . G 7 HOH A 5 905 8 HOH HOH . G 7 HOH A 6 906 27 HOH HOH . G 7 HOH A 7 907 1 HOH HOH . G 7 HOH A 8 908 9 HOH HOH . G 7 HOH A 9 909 2 HOH HOH . G 7 HOH A 10 910 10 HOH HOH . G 7 HOH A 11 911 6 HOH HOH . G 7 HOH A 12 912 3 HOH HOH . G 7 HOH A 13 913 11 HOH HOH . G 7 HOH A 14 914 16 HOH HOH . G 7 HOH A 15 915 12 HOH HOH . G 7 HOH A 16 916 18 HOH HOH . G 7 HOH A 17 917 28 HOH HOH . G 7 HOH A 18 918 4 HOH HOH . G 7 HOH A 19 919 22 HOH HOH . G 7 HOH A 20 920 26 HOH HOH . G 7 HOH A 21 921 14 HOH HOH . G 7 HOH A 22 922 17 HOH HOH . G 7 HOH A 23 923 7 HOH HOH . G 7 HOH A 24 924 5 HOH HOH . G 7 HOH A 25 925 21 HOH HOH . G 7 HOH A 26 926 25 HOH HOH . G 7 HOH A 27 927 29 HOH HOH . G 7 HOH A 28 928 15 HOH HOH . G 7 HOH A 29 929 19 HOH HOH . G 7 HOH A 30 930 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -24.841 -4.356 26.128 1 61.4 ? CHA HEM 801 A 1 HETATM 2 C CHB HEM . . . B 2 -28.164 -0.83 25.819 1 66.37 ? CHB HEM 801 A 1 HETATM 3 C CHC HEM . . . B 2 -29.172 -2.437 21.29 1 46.25 ? CHC HEM 801 A 1 HETATM 4 C CHD HEM . . . B 2 -27.118 -6.643 22.449 1 53.34 ? CHD HEM 801 A 1 HETATM 5 C C1A HEM . . . B 2 -25.526 -3.177 26.377 1 65.58 ? C1A HEM 801 A 1 HETATM 6 C C2A HEM . . . B 2 -25.197 -2.16 27.361 1 65.36 ? C2A HEM 801 A 1 HETATM 7 C C3A HEM . . . B 2 -26.106 -1.17 27.283 1 66.56 ? C3A HEM 801 A 1 HETATM 8 C C4A HEM . . . B 2 -27.062 -1.535 26.251 1 62.79 ? C4A HEM 801 A 1 HETATM 9 C CMA HEM . . . B 2 -26.109 0.102 28.185 1 63.14 ? CMA HEM 801 A 1 HETATM 10 C CAA HEM . . . B 2 -23.972 -2.207 28.31 1 56.66 ? CAA HEM 801 A 1 HETATM 11 C CBA HEM . . . B 2 -22.742 -1.964 27.422 1 50.98 ? CBA HEM 801 A 1 HETATM 12 C CGA HEM . . . B 2 -21.507 -1.898 28.279 1 60.97 ? CGA HEM 801 A 1 HETATM 13 O O1A HEM . . . B 2 -21.671 -1.679 29.491 1 58.91 ? O1A HEM 801 A 1 HETATM 14 O O2A HEM . . . B 2 -20.371 -2.063 27.777 1 68.63 ? O2A HEM 801 A 1 HETATM 15 C C1B HEM . . . B 2 -28.69 -0.917 24.538 1 66.92 ? C1B HEM 801 A 1 HETATM 16 C C2B HEM . . . B 2 -29.568 0.056 23.901 1 61.23 ? C2B HEM 801 A 1 HETATM 17 C C3B HEM . . . B 2 -29.853 -0.399 22.681 1 61.37 ? C3B HEM 801 A 1 HETATM 18 C C4B HEM . . . B 2 -29.16 -1.663 22.451 1 56.75 ? C4B HEM 801 A 1 HETATM 19 C CMB HEM . . . B 2 -30.124 1.363 24.532 1 55.12 ? CMB HEM 801 A 1 HETATM 20 C CAB HEM . . . B 2 -30.768 0.344 21.695 1 66.92 ? CAB HEM 801 A 1 HETATM 21 C CBB HEM . . . B 2 -31.975 -0.167 21.438 1 70.89 ? CBB HEM 801 A 1 HETATM 22 C C1C HEM . . . B 2 -28.662 -3.713 21.174 1 40.32 ? C1C HEM 801 A 1 HETATM 23 C C2C HEM . . . B 2 -28.666 -4.545 19.982 1 46.35 ? C2C HEM 801 A 1 HETATM 24 C C3C HEM . . . B 2 -28.089 -5.733 20.275 1 42.8 ? C3C HEM 801 A 1 HETATM 25 C C4C HEM . . . B 2 -27.729 -5.676 21.69 1 51.55 ? C4C HEM 801 A 1 HETATM 26 C CMC HEM . . . B 2 -29.242 -4.005 18.652 1 52.18 ? CMC HEM 801 A 1 HETATM 27 C CAC HEM . . . B 2 -27.818 -6.997 19.421 1 47.32 ? CAC HEM 801 A 1 HETATM 28 C CBC HEM . . . B 2 -28.345 -7.257 18.205 1 57.06 ? CBC HEM 801 A 1 HETATM 29 C C1D HEM . . . B 2 -26.289 -6.375 23.519 1 65.33 ? C1D HEM 801 A 1 HETATM 30 C C2D HEM . . . B 2 -25.359 -7.311 24.095 1 61.14 ? C2D HEM 801 A 1 HETATM 31 C C3D HEM . . . B 2 -24.714 -6.682 25.088 1 45.77 ? C3D HEM 801 A 1 HETATM 32 C C4D HEM . . . B 2 -25.224 -5.329 25.204 1 57.44 ? C4D HEM 801 A 1 HETATM 33 C CMD HEM . . . B 2 -25.165 -8.763 23.586 1 63.38 ? CMD HEM 801 A 1 HETATM 34 C CAD HEM . . . B 2 -23.642 -7.269 26.033 1 53.91 ? CAD HEM 801 A 1 HETATM 35 C CBD HEM . . . B 2 -22.33 -7.423 25.281 1 60.92 ? CBD HEM 801 A 1 HETATM 36 C CGD HEM . . . B 2 -21.232 -7.514 26.306 1 60.73 ? CGD HEM 801 A 1 HETATM 37 O O1D HEM . . . B 2 -21.322 -8.336 27.259 1 63.64 ? O1D HEM 801 A 1 HETATM 38 O O2D HEM . . . B 2 -20.248 -6.755 26.164 1 56.05 ? O2D HEM 801 A 1 HETATM 39 N NA HEM . . . B 2 -26.675 -2.756 25.727 1 65.28 ? NA HEM 801 A 1 HETATM 40 N NB HEM . . . B 2 -28.453 -1.939 23.612 1 60.25 ? NB HEM 801 A 1 HETATM 41 N NC HEM . . . B 2 -28.097 -4.444 22.2 1 51.93 ? NC HEM 801 A 1 HETATM 42 N ND HEM . . . B 2 -26.177 -5.176 24.222 1 62.42 ? ND HEM 801 A 1 HETATM 43 FE FE HEM . . . B 2 -27.696 -3.837 24.209 1 53.99 ? FE HEM 801 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #