data_7TSD # _model_server_result.job_id 983OOyL26FuDIkxCsoyhCg _model_server_result.datetime_utc '2024-11-13 05:00:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7TSD # _exptl.entry_id 7TSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TSD _cell.length_a 49.22 _cell.length_b 114.728 _cell.length_c 164.878 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -49.22 0 82.439 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 804 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 804 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 168 n n CHA C4D HEM doub 169 n n CHA HHA HEM sing 170 n n CHB C4A HEM sing 171 n n CHB C1B HEM doub 172 n n CHB HHB HEM sing 173 n n CHC C4B HEM sing 174 n n CHC C1C HEM doub 175 n n CHC HHC HEM sing 176 n n CHD C4C HEM doub 177 n n CHD C1D HEM sing 178 n n CHD HHD HEM sing 179 n n C1A C2A HEM doub 180 n y C1A NA HEM sing 181 n y C2A C3A HEM sing 182 n y C2A CAA HEM sing 183 n n C3A C4A HEM doub 184 n y C3A CMA HEM sing 185 n n C4A NA HEM sing 186 n y CMA HMA HEM sing 187 n n CMA HMAA HEM sing 188 n n CMA HMAB HEM sing 189 n n CAA CBA HEM sing 190 n n CAA HAA HEM sing 191 n n CAA HAAA HEM sing 192 n n CBA CGA HEM sing 193 n n CBA HBA HEM sing 194 n n CBA HBAA HEM sing 195 n n CGA O1A HEM doub 196 n n CGA O2A HEM sing 197 n n C1B C2B HEM sing 198 n n C1B NB HEM sing 199 n n C2B C3B HEM doub 200 n n C2B CMB HEM sing 201 n n C3B C4B HEM sing 202 n n C3B CAB HEM sing 203 n n C4B NB HEM doub 204 n n CMB HMB HEM sing 205 n n CMB HMBA HEM sing 206 n n CMB HMBB HEM sing 207 n n CAB CBB HEM doub 208 n n CAB HAB HEM sing 209 n n CBB HBB HEM sing 210 n n CBB HBBA HEM sing 211 n n C1C C2C HEM sing 212 n y C1C NC HEM sing 213 n y C2C C3C HEM doub 214 n y C2C CMC HEM sing 215 n n C3C C4C HEM sing 216 n y C3C CAC HEM sing 217 n n C4C NC HEM sing 218 n y CMC HMC HEM sing 219 n n CMC HMCA HEM sing 220 n n CMC HMCB HEM sing 221 n n CAC CBC HEM doub 222 n n CAC HAC HEM sing 223 n n CBC HBC HEM sing 224 n n CBC HBCA HEM sing 225 n n C1D C2D HEM sing 226 n n C1D ND HEM doub 227 n n C2D C3D HEM doub 228 n n C2D CMD HEM sing 229 n n C3D C4D HEM sing 230 n n C3D CAD HEM sing 231 n n C4D ND HEM sing 232 n n CMD HMD HEM sing 233 n n CMD HMDA HEM sing 234 n n CMD HMDB HEM sing 235 n n CAD CBD HEM sing 236 n n CAD HAD HEM sing 237 n n CAD HADA HEM sing 238 n n CBD CGD HEM sing 239 n n CBD HBD HEM sing 240 n n CBD HBDA HEM sing 241 n n CGD O1D HEM doub 242 n n CGD O2D HEM sing 243 n n O2A H2A HEM sing 244 n n O2D H2D HEM sing 245 n n FE NA HEM sing 246 n n FE NB HEM sing 247 n n FE NC HEM sing 248 n n FE ND HEM sing 249 n n # _atom_sites.entry_id 7TSD _atom_sites.fract_transf_matrix[1][1] 0.020317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 ACT A 1 803 860 ACT ACT . E 5 ZN A 1 804 900 ZN ZN . F 6 K7U A 1 805 800 K7U 1V1 . G 7 HOH A 1 901 37 HOH HOH . G 7 HOH A 2 902 8 HOH HOH . G 7 HOH A 3 903 15 HOH HOH . G 7 HOH A 4 904 22 HOH HOH . G 7 HOH A 5 905 21 HOH HOH . G 7 HOH A 6 906 39 HOH HOH . G 7 HOH A 7 907 14 HOH HOH . G 7 HOH A 8 908 23 HOH HOH . G 7 HOH A 9 909 25 HOH HOH . G 7 HOH A 10 910 10 HOH HOH . G 7 HOH A 11 911 11 HOH HOH . G 7 HOH A 12 912 9 HOH HOH . G 7 HOH A 13 913 48 HOH HOH . G 7 HOH A 14 914 5 HOH HOH . G 7 HOH A 15 915 46 HOH HOH . G 7 HOH A 16 916 1 HOH HOH . G 7 HOH A 17 917 32 HOH HOH . G 7 HOH A 18 918 3 HOH HOH . G 7 HOH A 19 919 4 HOH HOH . G 7 HOH A 20 920 19 HOH HOH . G 7 HOH A 21 921 26 HOH HOH . G 7 HOH A 22 922 27 HOH HOH . G 7 HOH A 23 923 42 HOH HOH . G 7 HOH A 24 924 38 HOH HOH . G 7 HOH A 25 925 41 HOH HOH . G 7 HOH A 26 926 45 HOH HOH . G 7 HOH A 27 927 28 HOH HOH . G 7 HOH A 28 928 24 HOH HOH . G 7 HOH A 29 929 35 HOH HOH . G 7 HOH A 30 930 47 HOH HOH . G 7 HOH A 31 931 36 HOH HOH . G 7 HOH A 32 932 29 HOH HOH . G 7 HOH A 33 933 2 HOH HOH . G 7 HOH A 34 934 6 HOH HOH . G 7 HOH A 35 935 17 HOH HOH . G 7 HOH A 36 936 20 HOH HOH . G 7 HOH A 37 937 16 HOH HOH . G 7 HOH A 38 938 40 HOH HOH . G 7 HOH A 39 939 44 HOH HOH . G 7 HOH A 40 940 43 HOH HOH . G 7 HOH A 41 941 30 HOH HOH . G 7 HOH A 42 942 31 HOH HOH . G 7 HOH A 43 943 7 HOH HOH . G 7 HOH A 44 944 33 HOH HOH . G 7 HOH A 45 945 18 HOH HOH . G 7 HOH A 46 946 13 HOH HOH . G 7 HOH A 47 947 12 HOH HOH . G 7 HOH A 48 948 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -25.434 -4.382 26.502 1 51.12 ? CHA HEM 801 A 1 HETATM 2 C CHB HEM . . . B 2 -28.598 -0.758 26.014 1 45.67 ? CHB HEM 801 A 1 HETATM 3 C CHC HEM . . . B 2 -29.626 -2.39 21.527 1 51.09 ? CHC HEM 801 A 1 HETATM 4 C CHD HEM . . . B 2 -27.44 -6.547 22.657 1 52.32 ? CHD HEM 801 A 1 HETATM 5 C C1A HEM . . . B 2 -26.073 -3.175 26.65 1 53.11 ? C1A HEM 801 A 1 HETATM 6 C C2A HEM . . . B 2 -25.651 -2.107 27.537 1 53.07 ? C2A HEM 801 A 1 HETATM 7 C C3A HEM . . . B 2 -26.515 -1.101 27.419 1 45.5 ? C3A HEM 801 A 1 HETATM 8 C C4A HEM . . . B 2 -27.523 -1.492 26.441 1 48.4 ? C4A HEM 801 A 1 HETATM 9 C CMA HEM . . . B 2 -26.442 0.229 28.198 1 47.99 ? CMA HEM 801 A 1 HETATM 10 C CAA HEM . . . B 2 -24.417 -2.153 28.451 1 51.08 ? CAA HEM 801 A 1 HETATM 11 C CBA HEM . . . B 2 -23.2 -1.849 27.574 1 50.27 ? CBA HEM 801 A 1 HETATM 12 C CGA HEM . . . B 2 -21.973 -1.679 28.437 1 57.42 ? CGA HEM 801 A 1 HETATM 13 O O1A HEM . . . B 2 -22.127 -1.508 29.676 1 46.1 ? O1A HEM 801 A 1 HETATM 14 O O2A HEM . . . B 2 -20.829 -1.72 27.902 1 51.84 ? O2A HEM 801 A 1 HETATM 15 C C1B HEM . . . B 2 -29.125 -0.869 24.74 1 45.62 ? C1B HEM 801 A 1 HETATM 16 C C2B HEM . . . B 2 -30.02 0.089 24.122 1 43.5 ? C2B HEM 801 A 1 HETATM 17 C C3B HEM . . . B 2 -30.322 -0.374 22.911 1 51.81 ? C3B HEM 801 A 1 HETATM 18 C C4B HEM . . . B 2 -29.599 -1.62 22.689 1 46.97 ? C4B HEM 801 A 1 HETATM 19 C CMB HEM . . . B 2 -30.564 1.382 24.783 1 50.3 ? CMB HEM 801 A 1 HETATM 20 C CAB HEM . . . B 2 -31.245 0.35 21.892 1 54.39 ? CAB HEM 801 A 1 HETATM 21 C CBB HEM . . . B 2 -32.002 -0.357 21.059 1 59.43 ? CBB HEM 801 A 1 HETATM 22 C C1C HEM . . . B 2 -29.125 -3.662 21.403 1 52.85 ? C1C HEM 801 A 1 HETATM 23 C C2C HEM . . . B 2 -29.187 -4.527 20.228 1 47.06 ? C2C HEM 801 A 1 HETATM 24 C C3C HEM . . . B 2 -28.578 -5.689 20.555 1 47.58 ? C3C HEM 801 A 1 HETATM 25 C C4C HEM . . . B 2 -28.113 -5.578 21.929 1 47.86 ? C4C HEM 801 A 1 HETATM 26 C CMC HEM . . . B 2 -29.87 -4.099 18.906 1 48.87 ? CMC HEM 801 A 1 HETATM 27 C CAC HEM . . . B 2 -28.347 -6.98 19.739 1 53.99 ? CAC HEM 801 A 1 HETATM 28 C CBC HEM . . . B 2 -28.81 -7.158 18.501 1 49.5 ? CBC HEM 801 A 1 HETATM 29 C C1D HEM . . . B 2 -26.641 -6.306 23.753 1 52.78 ? C1D HEM 801 A 1 HETATM 30 C C2D HEM . . . B 2 -25.626 -7.195 24.292 1 51.68 ? C2D HEM 801 A 1 HETATM 31 C C3D HEM . . . B 2 -25.06 -6.583 25.374 1 52.87 ? C3D HEM 801 A 1 HETATM 32 C C4D HEM . . . B 2 -25.719 -5.309 25.521 1 49.95 ? C4D HEM 801 A 1 HETATM 33 C CMD HEM . . . B 2 -25.364 -8.571 23.629 1 49.37 ? CMD HEM 801 A 1 HETATM 34 C CAD HEM . . . B 2 -23.936 -7.009 26.374 1 49.66 ? CAD HEM 801 A 1 HETATM 35 C CBD HEM . . . B 2 -23.736 -8.51 26.428 1 73.01 ? CBD HEM 801 A 1 HETATM 36 C CGD HEM . . . B 2 -22.636 -8.971 27.34 1 65.6 ? CGD HEM 801 A 1 HETATM 37 O O1D HEM . . . B 2 -22.66 -10.185 27.639 1 62.29 ? O1D HEM 801 A 1 HETATM 38 O O2D HEM . . . B 2 -21.753 -8.166 27.723 1 69.72 ? O2D HEM 801 A 1 HETATM 39 N NA HEM . . . B 2 -27.218 -2.755 26.005 1 50.87 ? NA HEM 801 A 1 HETATM 40 N NB HEM . . . B 2 -28.877 -1.905 23.838 1 39.72 ? NB HEM 801 A 1 HETATM 41 N NC HEM . . . B 2 -28.465 -4.338 22.401 1 51.27 ? NC HEM 801 A 1 HETATM 42 N ND HEM . . . B 2 -26.675 -5.167 24.527 1 51.64 ? ND HEM 801 A 1 HETATM 43 FE FE HEM . . . B 2 -28.107 -3.739 24.386 1 48.28 ? FE HEM 801 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 43 #