data_7TSD # _model_server_result.job_id LHpSvf205jPqCPC29m5r8g _model_server_result.datetime_utc '2024-11-13 05:04:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 7TSD # _exptl.entry_id 7TSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TSD _cell.length_a 49.22 _cell.length_b 114.728 _cell.length_c 164.878 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -49.22 0 82.439 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 804 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 804 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 135 n y N1 C8A H4B sing 136 n y C2 N2 H4B sing 137 n n C2 N3 H4B sing 138 n y N2 HN21 H4B sing 139 n n N2 HN22 H4B sing 140 n n N3 C4 H4B sing 141 n y N3 HN3 H4B sing 142 n n C4 O4 H4B doub 143 n n C4 C4A H4B sing 144 n y C4A C8A H4B doub 145 n y C4A N5 H4B sing 146 n n C8A N8 H4B sing 147 n n N5 C6 H4B sing 148 n n N5 HN5 H4B sing 149 n n N8 C7 H4B sing 150 n n N8 HN8 H4B sing 151 n n C6 C7 H4B sing 152 n n C6 C9 H4B sing 153 n n C6 H6 H4B sing 154 n n C7 H71 H4B sing 155 n n C7 H72 H4B sing 156 n n C9 O9 H4B sing 157 n n C9 C10 H4B sing 158 n n C9 H9 H4B sing 159 n n O9 HO9 H4B sing 160 n n C10 C11 H4B sing 161 n n C10 O10 H4B sing 162 n n C10 H10 H4B sing 163 n n C11 H111 H4B sing 164 n n C11 H112 H4B sing 165 n n C11 H113 H4B sing 166 n n O10 HO0 H4B sing 167 n n # _atom_sites.entry_id 7TSD _atom_sites.fract_transf_matrix[1][1] 0.020317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 ACT A 1 803 860 ACT ACT . E 5 ZN A 1 804 900 ZN ZN . F 6 K7U A 1 805 800 K7U 1V1 . G 7 HOH A 1 901 37 HOH HOH . G 7 HOH A 2 902 8 HOH HOH . G 7 HOH A 3 903 15 HOH HOH . G 7 HOH A 4 904 22 HOH HOH . G 7 HOH A 5 905 21 HOH HOH . G 7 HOH A 6 906 39 HOH HOH . G 7 HOH A 7 907 14 HOH HOH . G 7 HOH A 8 908 23 HOH HOH . G 7 HOH A 9 909 25 HOH HOH . G 7 HOH A 10 910 10 HOH HOH . G 7 HOH A 11 911 11 HOH HOH . G 7 HOH A 12 912 9 HOH HOH . G 7 HOH A 13 913 48 HOH HOH . G 7 HOH A 14 914 5 HOH HOH . G 7 HOH A 15 915 46 HOH HOH . G 7 HOH A 16 916 1 HOH HOH . G 7 HOH A 17 917 32 HOH HOH . G 7 HOH A 18 918 3 HOH HOH . G 7 HOH A 19 919 4 HOH HOH . G 7 HOH A 20 920 19 HOH HOH . G 7 HOH A 21 921 26 HOH HOH . G 7 HOH A 22 922 27 HOH HOH . G 7 HOH A 23 923 42 HOH HOH . G 7 HOH A 24 924 38 HOH HOH . G 7 HOH A 25 925 41 HOH HOH . G 7 HOH A 26 926 45 HOH HOH . G 7 HOH A 27 927 28 HOH HOH . G 7 HOH A 28 928 24 HOH HOH . G 7 HOH A 29 929 35 HOH HOH . G 7 HOH A 30 930 47 HOH HOH . G 7 HOH A 31 931 36 HOH HOH . G 7 HOH A 32 932 29 HOH HOH . G 7 HOH A 33 933 2 HOH HOH . G 7 HOH A 34 934 6 HOH HOH . G 7 HOH A 35 935 17 HOH HOH . G 7 HOH A 36 936 20 HOH HOH . G 7 HOH A 37 937 16 HOH HOH . G 7 HOH A 38 938 40 HOH HOH . G 7 HOH A 39 939 44 HOH HOH . G 7 HOH A 40 940 43 HOH HOH . G 7 HOH A 41 941 30 HOH HOH . G 7 HOH A 42 942 31 HOH HOH . G 7 HOH A 43 943 7 HOH HOH . G 7 HOH A 44 944 33 HOH HOH . G 7 HOH A 45 945 18 HOH HOH . G 7 HOH A 46 946 13 HOH HOH . G 7 HOH A 47 947 12 HOH HOH . G 7 HOH A 48 948 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . C 3 -22.151 -3.226 33.912 1 58.33 ? N1 H4B 802 A 1 HETATM 2 C C2 H4B . . . C 3 -22.163 -2.727 32.658 1 53.86 ? C2 H4B 802 A 1 HETATM 3 N N2 H4B . . . C 3 -23.337 -2.36 32.115 1 43.74 ? N2 H4B 802 A 1 HETATM 4 N N3 H4B . . . C 3 -21.02 -2.589 31.956 1 46 ? N3 H4B 802 A 1 HETATM 5 C C4 H4B . . . C 3 -19.843 -2.96 32.474 1 56.45 ? C4 H4B 802 A 1 HETATM 6 O O4 H4B . . . C 3 -18.795 -2.831 31.802 1 53.74 ? O4 H4B 802 A 1 HETATM 7 C C4A H4B . . . C 3 -19.822 -3.486 33.762 1 61.99 ? C4A H4B 802 A 1 HETATM 8 C C8A H4B . . . C 3 -20.998 -3.608 34.481 1 61.8 ? C8A H4B 802 A 1 HETATM 9 N N5 H4B . . . C 3 -18.675 -3.876 34.341 1 66.76 ? N5 H4B 802 A 1 HETATM 10 N N8 H4B . . . C 3 -21.027 -4.108 35.746 1 50.2 ? N8 H4B 802 A 1 HETATM 11 C C6 H4B . . . C 3 -18.787 -4.87 35.402 1 60.32 ? C6 H4B 802 A 1 HETATM 12 C C7 H4B . . . C 3 -19.803 -4.455 36.465 1 55.48 ? C7 H4B 802 A 1 HETATM 13 C C9 H4B . . . C 3 -17.435 -5.185 36.029 1 49.63 ? C9 H4B 802 A 1 HETATM 14 O O9 H4B . . . C 3 -16.803 -3.954 36.384 1 58.61 ? O9 H4B 802 A 1 HETATM 15 C C10 H4B . . . C 3 -17.615 -6.061 37.268 1 59.89 ? C10 H4B 802 A 1 HETATM 16 C C11 H4B . . . C 3 -16.297 -6.379 37.968 1 56.32 ? C11 H4B 802 A 1 HETATM 17 O O10 H4B . . . C 3 -18.274 -7.296 36.937 1 57.26 ? O10 H4B 802 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #