data_7TSD # _model_server_result.job_id lRHdK0SgK11sxgigc9eDPA _model_server_result.datetime_utc '2024-11-13 04:57:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 7TSD # _exptl.entry_id 7TSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.249 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[3-(3,3-difluoroazetidin-1-yl)prop-1-yn-1-yl]-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TSD _cell.length_a 49.22 _cell.length_b 114.728 _cell.length_c 164.878 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -49.22 0 82.439 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 804 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 804 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C12 H13 F2 N3' _chem_comp.formula_weight 237.249 _chem_comp.id K7U _chem_comp.mon_nstd_flag . _chem_comp.name 6-[3-(3,3-difluoroazetidin-1-yl)prop-1-yn-1-yl]-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C02 K7U sing 294 n n C03 C02 K7U doub 295 n y C03 C04 K7U sing 296 n y C07 C04 K7U sing 297 n n C02 N01 K7U sing 298 n y C04 C05 K7U doub 299 n y N01 C06 K7U doub 300 n y C05 C06 K7U sing 301 n y C06 C08 K7U sing 302 n n C12 C13 K7U sing 303 n n C12 N11 K7U sing 304 n n F15 C13 K7U sing 305 n n C08 C09 K7U trip 306 n n C13 F16 K7U sing 307 n n C13 C14 K7U sing 308 n n C09 C10 K7U sing 309 n n N11 C14 K7U sing 310 n n N11 C10 K7U sing 311 n n C03 H1 K7U sing 312 n n C05 H2 K7U sing 313 n n C07 H3 K7U sing 314 n n C07 H4 K7U sing 315 n n C07 H5 K7U sing 316 n n C10 H6 K7U sing 317 n n C10 H7 K7U sing 318 n n C12 H8 K7U sing 319 n n C12 H9 K7U sing 320 n n C14 H10 K7U sing 321 n n C14 H11 K7U sing 322 n n N02 H12 K7U sing 323 n n N02 H13 K7U sing 324 n n # _atom_sites.entry_id 7TSD _atom_sites.fract_transf_matrix[1][1] 0.020317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 ACT A 1 803 860 ACT ACT . E 5 ZN A 1 804 900 ZN ZN . F 6 K7U A 1 805 800 K7U 1V1 . G 7 HOH A 1 901 37 HOH HOH . G 7 HOH A 2 902 8 HOH HOH . G 7 HOH A 3 903 15 HOH HOH . G 7 HOH A 4 904 22 HOH HOH . G 7 HOH A 5 905 21 HOH HOH . G 7 HOH A 6 906 39 HOH HOH . G 7 HOH A 7 907 14 HOH HOH . G 7 HOH A 8 908 23 HOH HOH . G 7 HOH A 9 909 25 HOH HOH . G 7 HOH A 10 910 10 HOH HOH . G 7 HOH A 11 911 11 HOH HOH . G 7 HOH A 12 912 9 HOH HOH . G 7 HOH A 13 913 48 HOH HOH . G 7 HOH A 14 914 5 HOH HOH . G 7 HOH A 15 915 46 HOH HOH . G 7 HOH A 16 916 1 HOH HOH . G 7 HOH A 17 917 32 HOH HOH . G 7 HOH A 18 918 3 HOH HOH . G 7 HOH A 19 919 4 HOH HOH . G 7 HOH A 20 920 19 HOH HOH . G 7 HOH A 21 921 26 HOH HOH . G 7 HOH A 22 922 27 HOH HOH . G 7 HOH A 23 923 42 HOH HOH . G 7 HOH A 24 924 38 HOH HOH . G 7 HOH A 25 925 41 HOH HOH . G 7 HOH A 26 926 45 HOH HOH . G 7 HOH A 27 927 28 HOH HOH . G 7 HOH A 28 928 24 HOH HOH . G 7 HOH A 29 929 35 HOH HOH . G 7 HOH A 30 930 47 HOH HOH . G 7 HOH A 31 931 36 HOH HOH . G 7 HOH A 32 932 29 HOH HOH . G 7 HOH A 33 933 2 HOH HOH . G 7 HOH A 34 934 6 HOH HOH . G 7 HOH A 35 935 17 HOH HOH . G 7 HOH A 36 936 20 HOH HOH . G 7 HOH A 37 937 16 HOH HOH . G 7 HOH A 38 938 40 HOH HOH . G 7 HOH A 39 939 44 HOH HOH . G 7 HOH A 40 940 43 HOH HOH . G 7 HOH A 41 941 30 HOH HOH . G 7 HOH A 42 942 31 HOH HOH . G 7 HOH A 43 943 7 HOH HOH . G 7 HOH A 44 944 33 HOH HOH . G 7 HOH A 45 945 18 HOH HOH . G 7 HOH A 46 946 13 HOH HOH . G 7 HOH A 47 947 12 HOH HOH . G 7 HOH A 48 948 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 K7U . . . F 6 -25.962 0.279 23.404 1 50.51 ? C02 K7U 805 A 1 HETATM 2 C C03 K7U . . . F 6 -26.465 -0.462 22.328 1 45.62 ? C03 K7U 805 A 1 HETATM 3 C C04 K7U . . . F 6 -25.65 -1.419 21.723 1 49.35 ? C04 K7U 805 A 1 HETATM 4 C C05 K7U . . . F 6 -24.351 -1.614 22.219 1 61.57 ? C05 K7U 805 A 1 HETATM 5 C C06 K7U . . . F 6 -23.899 -0.859 23.297 1 62.87 ? C06 K7U 805 A 1 HETATM 6 C C07 K7U . . . F 6 -26.142 -2.245 20.54 1 48.29 ? C07 K7U 805 A 1 HETATM 7 C C08 K7U . . . F 6 -22.708 -1.008 23.748 1 63.39 ? C08 K7U 805 A 1 HETATM 8 C C09 K7U . . . F 6 -21.589 -1.21 24.05 1 69.35 ? C09 K7U 805 A 1 HETATM 9 C C10 K7U . . . F 6 -20.157 -1.43 24.347 1 78.4 ? C10 K7U 805 A 1 HETATM 10 C C12 K7U . . . F 6 -18.944 -3.305 25.439 1 81.7 ? C12 K7U 805 A 1 HETATM 11 C C13 K7U . . . F 6 -19.881 -4.475 25.199 1 80.33 ? C13 K7U 805 A 1 HETATM 12 C C14 K7U . . . F 6 -21.047 -3.517 25.12 1 78.69 ? C14 K7U 805 A 1 HETATM 13 F F15 K7U . . . F 6 -20.003 -5.299 26.213 1 80.92 ? F15 K7U 805 A 1 HETATM 14 F F16 K7U . . . F 6 -19.652 -5.102 24.065 1 91.4 ? F16 K7U 805 A 1 HETATM 15 N N01 K7U . . . F 6 -24.717 0.066 23.853 1 46.45 ? N01 K7U 805 A 1 HETATM 16 N N02 K7U . . . F 6 -26.723 1.222 24.013 1 55.55 ? N02 K7U 805 A 1 HETATM 17 N N11 K7U . . . F 6 -20.128 -2.417 25.453 1 79.19 ? N11 K7U 805 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #