data_7TTD
#
_model_server_result.job_id            O0nsJwvT12huPQ5OU5dZXQ 
_model_server_result.datetime_utc      '2024-11-09 01:54:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ttd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":502}' 
#
_entry.id    7TTD 
#
_exptl.entry_id    7TTD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.428 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-methoxy-4-[2-(morpholin-4-yl)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-3,4-dihydroquinoxalin-2(1H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TTD 
_cell.length_a            65.795 
_cell.length_b            127.211 
_cell.length_c            250.461 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TTD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 K O3G GTP . C GTP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc2 K O2B GTP . C GTP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc3 L MG MG . C MG 502 1_555 S O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc4 L MG MG . C MG 502 1_555 S O HOH . C HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? 
metalc ? metalc5 L MG MG . C MG 502 1_555 S O HOH . C HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc6 L MG MG . C MG 502 1_555 S O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
#
_chem_comp.formula           'C20 H23 N5 O3' 
_chem_comp.formula_weight    381.428 
_chem_comp.id                JUL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-methoxy-4-[2-(morpholin-4-yl)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-3,4-dihydroquinoxalin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 O24 JUL sing 268 n n 
O24 C23 JUL sing 269 n n 
C22 C23 JUL doub 270 n y 
C22 C21 JUL sing 271 n y 
C23 C26 JUL sing 272 n y 
C18 C19 JUL sing 273 n n 
C18 C17 JUL sing 274 n n 
C19 C15 JUL sing 275 n n 
C21 C20 JUL doub 276 n y 
C17 C16 JUL sing 277 n n 
C26 C27 JUL doub 278 n y 
C15 C16 JUL doub 279 n y 
C15 N14 JUL sing 280 n y 
C16 C05 JUL sing 281 n y 
C20 C27 JUL sing 282 n y 
C20 N04 JUL sing 283 n n 
N14 C07 JUL doub 284 n y 
C27 N28 JUL sing 285 n n 
C05 N04 JUL sing 286 n n 
C05 N06 JUL doub 287 n y 
N04 C03 JUL sing 288 n n 
C07 N06 JUL sing 289 n y 
C07 N08 JUL sing 290 n n 
C12 C13 JUL sing 291 n n 
C12 O11 JUL sing 292 n n 
C13 N08 JUL sing 293 n n 
N28 C02 JUL sing 294 n n 
N08 C09 JUL sing 295 n n 
C03 C02 JUL sing 296 n n 
O11 C10 JUL sing 297 n n 
C02 O01 JUL doub 298 n n 
C10 C09 JUL sing 299 n n 
C03 H1 JUL sing 300 n n 
C03 H2 JUL sing 301 n n 
C09 H3 JUL sing 302 n n 
C09 H4 JUL sing 303 n n 
C10 H5 JUL sing 304 n n 
C10 H6 JUL sing 305 n n 
C12 H7 JUL sing 306 n n 
C12 H8 JUL sing 307 n n 
C13 H9 JUL sing 308 n n 
C13 H10 JUL sing 309 n n 
C17 H11 JUL sing 310 n n 
C17 H12 JUL sing 311 n n 
C18 H13 JUL sing 312 n n 
C18 H14 JUL sing 313 n n 
C19 H15 JUL sing 314 n n 
C19 H16 JUL sing 315 n n 
C21 H17 JUL sing 316 n n 
C22 H18 JUL sing 317 n n 
C25 H19 JUL sing 318 n n 
C25 H20 JUL sing 319 n n 
C25 H21 JUL sing 320 n n 
C26 H22 JUL sing 321 n n 
N28 H23 JUL sing 322 n n 
#
_atom_sites.entry_id                     7TTD 
_atom_sites.fract_transf_matrix[1][1]    0.015199 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007861 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003993 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 501 501 GTP GTP . 
G 5 SO4 A 1 502 2 SO4 SO4 . 
H 6 GDP B 1 501 501 GDP GDP . 
I 7 JUL B 1 502 502 JUL X23 . 
J 5 SO4 B 1 503 3 SO4 SO4 . 
K 4 GTP C 1 501 501 GTP GTP . 
L 8 MG C 1 502 502 MG MG . 
M 4 GTP D 1 501 501 GTP GTP . 
N 7 JUL D 1 502 502 JUL X23 . 
O 5 SO4 D 1 503 1 SO4 SO4 . 
P 5 SO4 D 1 504 4 SO4 SO4 . 
Q 9 HOH A 1 601 33 HOH HOH . 
Q 9 HOH A 2 602 31 HOH HOH . 
Q 9 HOH A 3 603 10 HOH HOH . 
Q 9 HOH A 4 604 42 HOH HOH . 
Q 9 HOH A 5 605 63 HOH HOH . 
Q 9 HOH A 6 606 25 HOH HOH . 
Q 9 HOH A 7 607 24 HOH HOH . 
Q 9 HOH A 8 608 129 HOH HOH . 
Q 9 HOH A 9 609 65 HOH HOH . 
Q 9 HOH A 10 610 6 HOH HOH . 
Q 9 HOH A 11 611 68 HOH HOH . 
Q 9 HOH A 12 612 47 HOH HOH . 
Q 9 HOH A 13 613 37 HOH HOH . 
Q 9 HOH A 14 614 57 HOH HOH . 
Q 9 HOH A 15 615 121 HOH HOH . 
Q 9 HOH A 16 616 34 HOH HOH . 
Q 9 HOH A 17 617 43 HOH HOH . 
Q 9 HOH A 18 618 32 HOH HOH . 
Q 9 HOH A 19 619 130 HOH HOH . 
Q 9 HOH A 20 620 30 HOH HOH . 
Q 9 HOH A 21 621 39 HOH HOH . 
Q 9 HOH A 22 622 62 HOH HOH . 
Q 9 HOH A 23 623 56 HOH HOH . 
Q 9 HOH A 24 624 16 HOH HOH . 
Q 9 HOH A 25 625 29 HOH HOH . 
Q 9 HOH A 26 626 53 HOH HOH . 
Q 9 HOH A 27 627 45 HOH HOH . 
Q 9 HOH A 28 628 11 HOH HOH . 
Q 9 HOH A 29 629 59 HOH HOH . 
Q 9 HOH A 30 630 64 HOH HOH . 
Q 9 HOH A 31 631 60 HOH HOH . 
Q 9 HOH A 32 632 26 HOH HOH . 
Q 9 HOH A 33 633 41 HOH HOH . 
Q 9 HOH A 34 634 58 HOH HOH . 
Q 9 HOH A 35 635 124 HOH HOH . 
Q 9 HOH A 36 636 38 HOH HOH . 
Q 9 HOH A 37 637 44 HOH HOH . 
Q 9 HOH A 38 638 54 HOH HOH . 
Q 9 HOH A 39 639 48 HOH HOH . 
Q 9 HOH A 40 640 46 HOH HOH . 
R 9 HOH B 1 601 74 HOH HOH . 
R 9 HOH B 2 602 134 HOH HOH . 
R 9 HOH B 3 603 70 HOH HOH . 
R 9 HOH B 4 604 20 HOH HOH . 
R 9 HOH B 5 605 78 HOH HOH . 
R 9 HOH B 6 606 73 HOH HOH . 
R 9 HOH B 7 607 72 HOH HOH . 
R 9 HOH B 8 608 69 HOH HOH . 
R 9 HOH B 9 609 132 HOH HOH . 
R 9 HOH B 10 610 14 HOH HOH . 
R 9 HOH B 11 611 133 HOH HOH . 
R 9 HOH B 12 612 7 HOH HOH . 
R 9 HOH B 13 613 138 HOH HOH . 
R 9 HOH B 14 614 15 HOH HOH . 
R 9 HOH B 15 615 4 HOH HOH . 
R 9 HOH B 16 616 2 HOH HOH . 
R 9 HOH B 17 617 76 HOH HOH . 
R 9 HOH B 18 618 75 HOH HOH . 
R 9 HOH B 19 619 13 HOH HOH . 
R 9 HOH B 20 620 137 HOH HOH . 
R 9 HOH B 21 621 139 HOH HOH . 
R 9 HOH B 22 622 136 HOH HOH . 
R 9 HOH B 23 623 71 HOH HOH . 
R 9 HOH B 24 624 77 HOH HOH . 
R 9 HOH B 25 625 135 HOH HOH . 
R 9 HOH B 26 626 125 HOH HOH . 
S 9 HOH C 1 601 92 HOH HOH . 
S 9 HOH C 2 602 90 HOH HOH . 
S 9 HOH C 3 603 79 HOH HOH . 
S 9 HOH C 4 604 23 HOH HOH . 
S 9 HOH C 5 605 83 HOH HOH . 
S 9 HOH C 6 606 18 HOH HOH . 
S 9 HOH C 7 607 22 HOH HOH . 
S 9 HOH C 8 608 84 HOH HOH . 
S 9 HOH C 9 609 148 HOH HOH . 
S 9 HOH C 10 610 145 HOH HOH . 
S 9 HOH C 11 611 5 HOH HOH . 
S 9 HOH C 12 612 88 HOH HOH . 
S 9 HOH C 13 613 94 HOH HOH . 
S 9 HOH C 14 614 141 HOH HOH . 
S 9 HOH C 15 615 89 HOH HOH . 
S 9 HOH C 16 616 144 HOH HOH . 
S 9 HOH C 17 617 21 HOH HOH . 
S 9 HOH C 18 618 147 HOH HOH . 
S 9 HOH C 19 619 146 HOH HOH . 
S 9 HOH C 20 620 85 HOH HOH . 
S 9 HOH C 21 621 87 HOH HOH . 
S 9 HOH C 22 622 82 HOH HOH . 
S 9 HOH C 23 623 143 HOH HOH . 
S 9 HOH C 24 624 86 HOH HOH . 
S 9 HOH C 25 625 93 HOH HOH . 
S 9 HOH C 26 626 142 HOH HOH . 
S 9 HOH C 27 627 140 HOH HOH . 
S 9 HOH C 28 628 126 HOH HOH . 
T 9 HOH D 1 601 106 HOH HOH . 
T 9 HOH D 2 602 96 HOH HOH . 
T 9 HOH D 3 603 95 HOH HOH . 
T 9 HOH D 4 604 52 HOH HOH . 
T 9 HOH D 5 605 91 HOH HOH . 
T 9 HOH D 6 606 105 HOH HOH . 
T 9 HOH D 7 607 50 HOH HOH . 
T 9 HOH D 8 608 128 HOH HOH . 
T 9 HOH D 9 609 108 HOH HOH . 
T 9 HOH D 10 610 51 HOH HOH . 
T 9 HOH D 11 611 107 HOH HOH . 
T 9 HOH D 12 612 17 HOH HOH . 
T 9 HOH D 13 613 12 HOH HOH . 
T 9 HOH D 14 614 116 HOH HOH . 
T 9 HOH D 15 615 111 HOH HOH . 
T 9 HOH D 16 616 9 HOH HOH . 
T 9 HOH D 17 617 8 HOH HOH . 
T 9 HOH D 18 618 104 HOH HOH . 
T 9 HOH D 19 619 19 HOH HOH . 
T 9 HOH D 20 620 109 HOH HOH . 
T 9 HOH D 21 621 1 HOH HOH . 
T 9 HOH D 22 622 118 HOH HOH . 
T 9 HOH D 23 623 100 HOH HOH . 
T 9 HOH D 24 624 127 HOH HOH . 
T 9 HOH D 25 625 112 HOH HOH . 
T 9 HOH D 26 626 117 HOH HOH . 
T 9 HOH D 27 627 149 HOH HOH . 
T 9 HOH D 28 628 99 HOH HOH . 
T 9 HOH D 29 629 150 HOH HOH . 
T 9 HOH D 30 630 97 HOH HOH . 
T 9 HOH D 31 631 102 HOH HOH . 
T 9 HOH D 32 632 103 HOH HOH . 
T 9 HOH D 33 633 98 HOH HOH . 
T 9 HOH D 34 634 119 HOH HOH . 
T 9 HOH D 35 635 113 HOH HOH . 
T 9 HOH D 36 636 101 HOH HOH . 
U 9 HOH E 1 201 55 HOH HOH . 
U 9 HOH E 2 202 120 HOH HOH . 
U 9 HOH E 3 203 131 HOH HOH . 
U 9 HOH E 4 204 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 JUL . . . N 7 23.542 65.514 14.224 1 45.78 ? C02 JUL 502 D 1 
HETATM 2 C C03 JUL . . . N 7 24.17 66.889 13.857 1 39.46 ? C03 JUL 502 D 1 
HETATM 3 C C05 JUL . . . N 7 23.742 68.652 12.205 1 42.72 ? C05 JUL 502 D 1 
HETATM 4 C C07 JUL . . . N 7 24.188 70.835 12.754 1 51.31 ? C07 JUL 502 D 1 
HETATM 5 C C09 JUL . . . N 7 25.531 71.396 14.81 1 52.87 ? C09 JUL 502 D 1 
HETATM 6 C C10 JUL . . . N 7 26.936 71.997 14.788 1 49.28 ? C10 JUL 502 D 1 
HETATM 7 C C12 JUL . . . N 7 26.227 73.738 13.293 1 43.32 ? C12 JUL 502 D 1 
HETATM 8 C C13 JUL . . . N 7 24.801 73.184 13.305 1 43.63 ? C13 JUL 502 D 1 
HETATM 9 C C15 JUL . . . N 7 22.7 70.494 11.038 1 39.09 ? C15 JUL 502 D 1 
HETATM 10 C C16 JUL . . . N 7 22.864 69.122 11.225 1 42.12 ? C16 JUL 502 D 1 
HETATM 11 C C17 JUL . . . N 7 21.953 68.387 10.191 1 42.93 ? C17 JUL 502 D 1 
HETATM 12 C C18 JUL . . . N 7 20.968 69.451 9.738 1 49.76 ? C18 JUL 502 D 1 
HETATM 13 C C19 JUL . . . N 7 21.698 70.754 9.904 1 43.12 ? C19 JUL 502 D 1 
HETATM 14 C C20 JUL . . . N 7 24.236 66.243 11.494 1 42.58 ? C20 JUL 502 D 1 
HETATM 15 C C21 JUL . . . N 7 24.732 66.569 10.206 1 43.04 ? C21 JUL 502 D 1 
HETATM 16 C C22 JUL . . . N 7 24.952 65.555 9.264 1 41.77 ? C22 JUL 502 D 1 
HETATM 17 C C23 JUL . . . N 7 24.696 64.203 9.575 1 40.34 ? C23 JUL 502 D 1 
HETATM 18 C C25 JUL . . . N 7 25.275 63.568 7.324 1 35.04 ? C25 JUL 502 D 1 
HETATM 19 C C26 JUL . . . N 7 24.21 63.887 10.844 1 45.53 ? C26 JUL 502 D 1 
HETATM 20 C C27 JUL . . . N 7 23.988 64.915 11.807 1 47.76 ? C27 JUL 502 D 1 
HETATM 21 N N04 JUL . . . N 7 23.977 67.252 12.496 1 38.9 ? N04 JUL 502 D 1 
HETATM 22 N N06 JUL . . . N 7 24.374 69.541 12.955 1 43.03 ? N06 JUL 502 D 1 
HETATM 23 N N08 JUL . . . N 7 24.879 71.74 13.539 1 52.97 ? N08 JUL 502 D 1 
HETATM 24 N N14 JUL . . . N 7 23.379 71.308 11.813 1 45.47 ? N14 JUL 502 D 1 
HETATM 25 N N28 JUL . . . N 7 23.466 64.552 13.139 1 43.36 ? N28 JUL 502 D 1 
HETATM 26 O O01 JUL . . . N 7 23.138 65.271 15.299 1 45.52 ? O01 JUL 502 D 1 
HETATM 27 O O11 JUL . . . N 7 26.871 73.401 14.52 1 54.69 ? O11 JUL 502 D 1 
HETATM 28 O O24 JUL . . . N 7 24.927 63.17 8.636 1 46.65 ? O24 JUL 502 D 1 
#
_model_server_stats.io_time_ms              176 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#