data_7TTE # _model_server_result.job_id YXLu6QcfSAo8uL2Bd2-KNg _model_server_result.datetime_utc '2025-01-25 11:31:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7tte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 7TTE # _exptl.entry_id 7TTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.402 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-(cyclopropylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TTE _cell.length_a 66.062 _cell.length_b 127.425 _cell.length_c 251.622 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 K O3G GTP . C GTP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc2 K O2B GTP . C GTP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 L MG MG . C MG 502 1_555 S O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 L MG MG . C MG 502 1_555 S O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc5 L MG MG . C MG 502 1_555 S O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc6 L MG MG . C MG 502 1_555 S O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'C19 H21 N5 O2' _chem_comp.formula_weight 351.402 _chem_comp.id JVR _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-(cyclopropylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 O02 JVR sing 268 n n O02 C13 JVR sing 269 n n C12 C13 JVR doub 270 n y C12 C11 JVR sing 271 n y C13 C15 JVR sing 272 n y C11 C10 JVR doub 273 n y C08 C09 JVR sing 274 n n C08 C07 JVR sing 275 n n C09 C05 JVR sing 276 n n C07 C06 JVR sing 277 n n C15 C16 JVR doub 278 n y C05 C06 JVR doub 279 n y C05 N04 JVR sing 280 n y C06 C03 JVR sing 281 n y C10 C16 JVR sing 282 n y C10 N01 JVR sing 283 n n C16 N05 JVR sing 284 n n N04 C04 JVR doub 285 n y C03 N01 JVR sing 286 n n C03 N02 JVR doub 287 n y N01 C02 JVR sing 288 n n C04 N02 JVR sing 289 n y C04 N03 JVR sing 290 n n N05 C01 JVR sing 291 n n C02 C01 JVR sing 292 n n C01 O01 JVR doub 293 n n C02 H1 JVR sing 294 n n C02 H2 JVR sing 295 n n C07 H3 JVR sing 296 n n C07 H4 JVR sing 297 n n C08 H5 JVR sing 298 n n C08 H6 JVR sing 299 n n C09 H7 JVR sing 300 n n C09 H8 JVR sing 301 n n C11 H9 JVR sing 302 n n C12 H10 JVR sing 303 n n C14 H11 JVR sing 304 n n C14 H12 JVR sing 305 n n C14 H13 JVR sing 306 n n C15 H14 JVR sing 307 n n N03 H15 JVR sing 308 n n N05 H17 JVR sing 309 n n N03 C1 JVR sing 310 n n C1 C2 JVR sing 311 n n C2 C3 JVR sing 312 n n C3 C1 JVR sing 313 n n C1 H16 JVR sing 314 n n C2 H18 JVR sing 315 n n C2 H19 JVR sing 316 n n C3 H20 JVR sing 317 n n C3 H21 JVR sing 318 n n # _atom_sites.entry_id 7TTE _atom_sites.fract_transf_matrix[1][1] 0.015137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 501 501 GTP GTP . G 5 SO4 A 1 502 1 SO4 SO4 . H 6 GDP B 1 501 501 GDP GDP . I 7 JVR B 1 502 502 JVR Z35 . J 5 SO4 B 1 503 2 SO4 SO4 . K 4 GTP C 1 501 501 GTP GTP . L 8 MG C 1 502 502 MG MG . M 4 GTP D 1 501 501 GTP GTP . N 7 JVR D 1 502 502 JVR Z35 . O 5 SO4 D 1 503 3 SO4 SO4 . P 5 SO4 D 1 504 4 SO4 SO4 . Q 9 HOH A 1 601 6 HOH HOH . R 9 HOH B 1 601 12 HOH HOH . R 9 HOH B 2 602 7 HOH HOH . S 9 HOH C 1 601 1 HOH HOH . S 9 HOH C 2 602 2 HOH HOH . S 9 HOH C 3 603 4 HOH HOH . S 9 HOH C 4 604 3 HOH HOH . S 9 HOH C 5 605 8 HOH HOH . S 9 HOH C 6 606 10 HOH HOH . T 9 HOH D 1 601 11 HOH HOH . T 9 HOH D 2 602 5 HOH HOH . T 9 HOH D 3 603 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JVR . . . I 7 -6.228 -8.506 38.331 1 97.17 ? C10 JVR 502 B 1 HETATM 2 C C01 JVR . . . I 7 -6.634 -9.476 40.994 1 98.23 ? C01 JVR 502 B 1 HETATM 3 C C02 JVR . . . I 7 -6.234 -8.01 40.784 1 82.52 ? C02 JVR 502 B 1 HETATM 4 C C03 JVR . . . I 7 -7.33 -6.418 39.186 1 94.34 ? C03 JVR 502 B 1 HETATM 5 C C04 JVR . . . I 7 -7.673 -4.169 39.706 1 103.43 ? C04 JVR 502 B 1 HETATM 6 C C05 JVR . . . I 7 -9.105 -5.158 38.195 1 88.54 ? C05 JVR 502 B 1 HETATM 7 C C06 JVR . . . I 7 -8.442 -6.359 38.311 1 88.88 ? C06 JVR 502 B 1 HETATM 8 C C07 JVR . . . I 7 -9.1 -7.407 37.428 1 79.59 ? C07 JVR 502 B 1 HETATM 9 C C08 JVR . . . I 7 -10.497 -6.784 37.219 1 80.56 ? C08 JVR 502 B 1 HETATM 10 C C09 JVR . . . I 7 -10.266 -5.254 37.237 1 81.67 ? C09 JVR 502 B 1 HETATM 11 C C11 JVR . . . I 7 -5.868 -8.087 37.035 1 87.12 ? C11 JVR 502 B 1 HETATM 12 C C12 JVR . . . I 7 -5.565 -9.041 36.062 1 93.81 ? C12 JVR 502 B 1 HETATM 13 C C13 JVR . . . I 7 -5.613 -10.415 36.385 1 94.68 ? C13 JVR 502 B 1 HETATM 14 C C14 JVR . . . I 7 -4.571 -11.247 34.267 1 83.82 ? C14 JVR 502 B 1 HETATM 15 C C15 JVR . . . I 7 -5.963 -10.84 37.659 1 95.32 ? C15 JVR 502 B 1 HETATM 16 C C16 JVR . . . I 7 -6.272 -9.884 38.62 1 96.66 ? C16 JVR 502 B 1 HETATM 17 N N01 JVR . . . I 7 -6.569 -7.595 39.397 1 94.56 ? N01 JVR 502 B 1 HETATM 18 N N02 JVR . . . I 7 -6.96 -5.316 39.867 1 96.56 ? N02 JVR 502 B 1 HETATM 19 N N03 JVR . . . I 7 -7.318 -3.007 40.405 1 104.45 ? N03 JVR 502 B 1 HETATM 20 N N04 JVR . . . I 7 -8.738 -4.069 38.876 1 96.2 ? N04 JVR 502 B 1 HETATM 21 N N05 JVR . . . I 7 -6.631 -10.315 39.915 1 95.01 ? N05 JVR 502 B 1 HETATM 22 O O01 JVR . . . I 7 -6.96 -9.959 42.074 1 109.06 ? O01 JVR 502 B 1 HETATM 23 O O02 JVR . . . I 7 -5.329 -11.419 35.479 1 88.95 ? O02 JVR 502 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #