data_7TTE
#
_model_server_result.job_id            WdfI1feEa0PyPyXCrbQlQw 
_model_server_result.datetime_utc      '2025-01-25 11:33:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7tte 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":502}' 
#
_entry.id    7TTE 
#
_exptl.entry_id    7TTE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.402 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[2-(cyclopropylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TTE 
_cell.length_a            66.062 
_cell.length_b            127.425 
_cell.length_c            251.622 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TTE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 K O3G GTP . C GTP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
metalc ? metalc2 K O2B GTP . C GTP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 L MG MG . C MG 502 1_555 S O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc4 L MG MG . C MG 502 1_555 S O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc5 L MG MG . C MG 502 1_555 S O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc6 L MG MG . C MG 502 1_555 S O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
#
_chem_comp.formula           'C19 H21 N5 O2' 
_chem_comp.formula_weight    351.402 
_chem_comp.id                JVR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[2-(cyclopropylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 O02 JVR sing 268 n n 
O02 C13 JVR sing 269 n n 
C12 C13 JVR doub 270 n y 
C12 C11 JVR sing 271 n y 
C13 C15 JVR sing 272 n y 
C11 C10 JVR doub 273 n y 
C08 C09 JVR sing 274 n n 
C08 C07 JVR sing 275 n n 
C09 C05 JVR sing 276 n n 
C07 C06 JVR sing 277 n n 
C15 C16 JVR doub 278 n y 
C05 C06 JVR doub 279 n y 
C05 N04 JVR sing 280 n y 
C06 C03 JVR sing 281 n y 
C10 C16 JVR sing 282 n y 
C10 N01 JVR sing 283 n n 
C16 N05 JVR sing 284 n n 
N04 C04 JVR doub 285 n y 
C03 N01 JVR sing 286 n n 
C03 N02 JVR doub 287 n y 
N01 C02 JVR sing 288 n n 
C04 N02 JVR sing 289 n y 
C04 N03 JVR sing 290 n n 
N05 C01 JVR sing 291 n n 
C02 C01 JVR sing 292 n n 
C01 O01 JVR doub 293 n n 
C02 H1 JVR sing 294 n n 
C02 H2 JVR sing 295 n n 
C07 H3 JVR sing 296 n n 
C07 H4 JVR sing 297 n n 
C08 H5 JVR sing 298 n n 
C08 H6 JVR sing 299 n n 
C09 H7 JVR sing 300 n n 
C09 H8 JVR sing 301 n n 
C11 H9 JVR sing 302 n n 
C12 H10 JVR sing 303 n n 
C14 H11 JVR sing 304 n n 
C14 H12 JVR sing 305 n n 
C14 H13 JVR sing 306 n n 
C15 H14 JVR sing 307 n n 
N03 H15 JVR sing 308 n n 
N05 H17 JVR sing 309 n n 
N03 C1 JVR sing 310 n n 
C1 C2 JVR sing 311 n n 
C2 C3 JVR sing 312 n n 
C3 C1 JVR sing 313 n n 
C1 H16 JVR sing 314 n n 
C2 H18 JVR sing 315 n n 
C2 H19 JVR sing 316 n n 
C3 H20 JVR sing 317 n n 
C3 H21 JVR sing 318 n n 
#
_atom_sites.entry_id                     7TTE 
_atom_sites.fract_transf_matrix[1][1]    0.015137 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007848 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 501 501 GTP GTP . 
G 5 SO4 A 1 502 1 SO4 SO4 . 
H 6 GDP B 1 501 501 GDP GDP . 
I 7 JVR B 1 502 502 JVR Z35 . 
J 5 SO4 B 1 503 2 SO4 SO4 . 
K 4 GTP C 1 501 501 GTP GTP . 
L 8 MG C 1 502 502 MG MG . 
M 4 GTP D 1 501 501 GTP GTP . 
N 7 JVR D 1 502 502 JVR Z35 . 
O 5 SO4 D 1 503 3 SO4 SO4 . 
P 5 SO4 D 1 504 4 SO4 SO4 . 
Q 9 HOH A 1 601 6 HOH HOH . 
R 9 HOH B 1 601 12 HOH HOH . 
R 9 HOH B 2 602 7 HOH HOH . 
S 9 HOH C 1 601 1 HOH HOH . 
S 9 HOH C 2 602 2 HOH HOH . 
S 9 HOH C 3 603 4 HOH HOH . 
S 9 HOH C 4 604 3 HOH HOH . 
S 9 HOH C 5 605 8 HOH HOH . 
S 9 HOH C 6 606 10 HOH HOH . 
T 9 HOH D 1 601 11 HOH HOH . 
T 9 HOH D 2 602 5 HOH HOH . 
T 9 HOH D 3 603 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 JVR . . . N 7 23.917 65.889 11.391 1 86.33 ? C10 JVR 502 D 1 
HETATM 2 C C01 JVR . . . N 7 23.23 64.938 13.975 1 83.6 ? C01 JVR 502 D 1 
HETATM 3 C C02 JVR . . . N 7 24.032 66.233 13.85 1 66.39 ? C02 JVR 502 D 1 
HETATM 4 C C03 JVR . . . N 7 23.608 68.176 12.402 1 84.03 ? C03 JVR 502 D 1 
HETATM 5 C C04 JVR . . . N 7 24.228 70.191 13.317 1 94.89 ? C04 JVR 502 D 1 
HETATM 6 C C05 JVR . . . N 7 22.759 70.253 11.588 1 81.96 ? C05 JVR 502 D 1 
HETATM 7 C C06 JVR . . . N 7 22.784 68.874 11.505 1 82.06 ? C06 JVR 502 D 1 
HETATM 8 C C07 JVR . . . N 7 21.877 68.398 10.401 1 81.6 ? C07 JVR 502 D 1 
HETATM 9 C C08 JVR . . . N 7 21.051 69.679 10.115 1 75.65 ? C08 JVR 502 D 1 
HETATM 10 C C09 JVR . . . N 7 21.859 70.902 10.583 1 72.05 ? C09 JVR 502 D 1 
HETATM 11 C C11 JVR . . . N 7 24.419 66.29 10.153 1 88.45 ? C11 JVR 502 D 1 
HETATM 12 C C12 JVR . . . N 7 24.526 65.374 9.114 1 87.88 ? C12 JVR 502 D 1 
HETATM 13 C C13 JVR . . . N 7 24.142 64.05 9.312 1 80.43 ? C13 JVR 502 D 1 
HETATM 14 C C14 JVR . . . N 7 25.154 63.279 7.153 1 69.19 ? C14 JVR 502 D 1 
HETATM 15 C C15 JVR . . . N 7 23.64 63.629 10.537 1 82.58 ? C15 JVR 502 D 1 
HETATM 16 C C16 JVR . . . N 7 23.538 64.546 11.578 1 84.44 ? C16 JVR 502 D 1 
HETATM 17 N N01 JVR . . . N 7 23.779 66.785 12.5 1 78.77 ? N01 JVR 502 D 1 
HETATM 18 N N02 JVR . . . N 7 24.313 68.86 13.294 1 89.68 ? N02 JVR 502 D 1 
HETATM 19 N N03 JVR . . . N 7 24.984 70.852 14.275 1 111.94 ? N03 JVR 502 D 1 
HETATM 20 N N04 JVR . . . N 7 23.464 70.924 12.485 1 87.96 ? N04 JVR 502 D 1 
HETATM 21 N N05 JVR . . . N 7 23.034 64.159 12.853 1 83.71 ? N05 JVR 502 D 1 
HETATM 22 O O01 JVR . . . N 7 22.759 64.553 15.033 1 102.49 ? O01 JVR 502 D 1 
HETATM 23 O O02 JVR . . . N 7 24.251 63.134 8.282 1 82.23 ? O02 JVR 502 D 1 
HETATM 24 C C1 JVR . . . N 7 24.985 72.306 14.373 1 118.11 ? C1 JVR 502 D 1 
HETATM 25 C C2 JVR . . . N 7 25.705 72.997 13.248 1 116.52 ? C2 JVR 502 D 1 
HETATM 26 C C3 JVR . . . N 7 26.343 72.897 14.608 1 119.6 ? C3 JVR 502 D 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#