data_7TTN # _model_server_result.job_id 9d8hRClGZhjcWDEkWu7zjw _model_server_result.datetime_utc '2024-11-26 01:19:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ttn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":602}' # _entry.id 7TTN # _exptl.entry_id 7TTN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TTN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 L N N ? 12 N N N ? 12 Q N N ? 12 T N N ? 12 W N N ? 12 Z N N ? 12 CA N N ? 12 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 99 B ASP 99 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 B OD2 ASP 99 B ASP 99 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 C OD1 ASP 92 C ASP 92 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc4 M MG MG . C MG 601 1_555 N O2B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc5 M MG MG . C MG 601 1_555 N O1B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc6 M MG MG . C MG 601 1_555 N O1A ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc7 D OD1 ASP 104 D ASP 104 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc8 P MG MG . D MG 601 1_555 Q O1A ADP . D ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc9 P MG MG . D MG 601 1_555 Q O1B ADP . D ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc10 E OD1 ASP 97 E ASP 97 1_555 S MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc11 S MG MG . E MG 601 1_555 T O3A ADP . E ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc12 F OD1 ASP 104 F ASP 104 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc13 F OD2 ASP 104 F ASP 104 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc14 V MG MG . F MG 601 1_555 W O3B ADP . F ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc15 V MG MG . F MG 601 1_555 W O3A ADP . F ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc16 G OD1 ASP 88 G ASP 88 1_555 Y MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc17 G OD2 ASP 88 G ASP 88 1_555 Y MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc18 Y MG MG . G MG 601 1_555 Z O1B ADP . G ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc19 H OD1 ASP 93 H ASP 93 1_555 BA MG MG . H MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc20 BA MG MG . H MG 601 1_555 CA O3A ADP . H ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc21 I OD2 ASP 90 I ASP 90 1_555 EA MG MG . I MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc22 EA MG MG . I MG 601 1_555 FA O3A ADP . I ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7TTN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 AF3 B 1 601 603 AF3 AF3 . K 11 MG B 1 602 601 MG MG . L 12 ADP B 1 603 602 ADP ADP . M 11 MG C 1 601 611 MG MG . N 12 ADP C 1 602 612 ADP ADP . O 10 AF3 C 1 603 613 AF3 AF3 . P 11 MG D 1 601 601 MG MG . Q 12 ADP D 1 602 602 ADP ADP . R 10 AF3 D 1 603 603 AF3 AF3 . S 11 MG E 1 601 601 MG MG . T 12 ADP E 1 602 602 ADP ADP . U 10 AF3 E 1 603 603 AF3 AF3 . V 11 MG F 1 601 601 MG MG . W 12 ADP F 1 602 602 ADP ADP . X 10 AF3 F 1 603 603 AF3 AF3 . Y 11 MG G 1 601 601 MG MG . Z 12 ADP G 1 602 602 ADP ADP . AA 10 AF3 G 1 603 603 AF3 AF3 . BA 11 MG H 1 601 601 MG MG . CA 12 ADP H 1 602 602 ADP ADP . DA 10 AF3 H 1 603 603 AF3 AF3 . EA 11 MG I 1 601 601 MG MG . FA 12 ADP I 1 602 602 ADP ADP . GA 10 AF3 I 1 603 603 AF3 AF3 . HA 13 HOH B 1 701 701 HOH HOH . IA 13 HOH C 1 701 711 HOH HOH . JA 13 HOH D 1 701 701 HOH HOH . KA 13 HOH E 1 701 701 HOH HOH . LA 13 HOH F 1 701 701 HOH HOH . MA 13 HOH G 1 701 701 HOH HOH . NA 13 HOH H 1 701 701 HOH HOH . OA 13 HOH I 1 701 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . W 12 206.856 128.868 152.572 1 67.32 ? PB ADP 602 F 1 HETATM 2 O O1B ADP . . . W 12 206.37 130.004 151.711 1 57.28 ? O1B ADP 602 F 1 HETATM 3 O O2B ADP . . . W 12 207.212 129.263 153.98 1 70.1 ? O2B ADP 602 F 1 HETATM 4 O O3B ADP . . . W 12 207.859 127.96 151.91 1 71.53 ? O3B ADP 602 F 1 HETATM 5 P PA ADP . . . W 12 205.422 126.837 153.895 1 72.59 ? PA ADP 602 F 1 HETATM 6 O O1A ADP . . . W 12 204.232 125.988 153.555 1 70.45 ? O1A ADP 602 F 1 HETATM 7 O O2A ADP . . . W 12 205.483 127.504 155.244 1 66.72 ? O2A ADP 602 F 1 HETATM 8 O O3A ADP . . . W 12 205.553 127.946 152.738 1 54.39 ? O3A ADP 602 F 1 HETATM 9 O O5' ADP . . . W 12 206.711 125.891 153.749 1 72.19 ? O5' ADP 602 F 1 HETATM 10 C C5' ADP . . . W 12 207.8 126.045 154.651 1 68.96 ? C5' ADP 602 F 1 HETATM 11 C C4' ADP . . . W 12 208.605 124.754 154.732 1 63.71 ? C4' ADP 602 F 1 HETATM 12 O O4' ADP . . . W 12 207.77 123.629 155.005 1 65.41 ? O4' ADP 602 F 1 HETATM 13 C C3' ADP . . . W 12 209.32 124.438 153.431 1 63.8 ? C3' ADP 602 F 1 HETATM 14 O O3' ADP . . . W 12 210.698 124.793 153.547 1 68.58 ? O3' ADP 602 F 1 HETATM 15 C C2' ADP . . . W 12 209.182 122.941 153.25 1 62.03 ? C2' ADP 602 F 1 HETATM 16 O O2' ADP . . . W 12 210.471 122.326 153.226 1 71.72 ? O2' ADP 602 F 1 HETATM 17 C C1' ADP . . . W 12 208.397 122.468 154.46 1 64.07 ? C1' ADP 602 F 1 HETATM 18 N N9 ADP . . . W 12 207.42 121.423 154.07 1 58.98 ? N9 ADP 602 F 1 HETATM 19 C C8 ADP . . . W 12 206.532 121.501 153.065 1 60.53 ? C8 ADP 602 F 1 HETATM 20 N N7 ADP . . . W 12 205.797 120.364 152.975 1 65.04 ? N7 ADP 602 F 1 HETATM 21 C C5 ADP . . . W 12 206.222 119.529 153.937 1 61.58 ? C5 ADP 602 F 1 HETATM 22 C C6 ADP . . . W 12 205.877 118.166 154.399 1 62.07 ? C6 ADP 602 F 1 HETATM 23 N N6 ADP . . . W 12 204.902 117.448 153.796 1 66.42 ? N6 ADP 602 F 1 HETATM 24 N N1 ADP . . . W 12 206.567 117.661 155.442 1 58.76 ? N1 ADP 602 F 1 HETATM 25 C C2 ADP . . . W 12 207.537 118.362 156.052 1 59.35 ? C2 ADP 602 F 1 HETATM 26 N N3 ADP . . . W 12 207.901 119.601 155.685 1 65.28 ? N3 ADP 602 F 1 HETATM 27 C C4 ADP . . . W 12 207.295 120.229 154.651 1 62.53 ? C4 ADP 602 F 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #