data_7TTT
#
_model_server_result.job_id            pC29qLcYa-fb4Gnx2R_kkg 
_model_server_result.datetime_utc      '2024-11-26 03:17:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ttt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":602}' 
#
_entry.id    7TTT 
#
_exptl.entry_id    7TTT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7TTT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7TTT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 K N N 
? 11 N N N 
? 11 Q N N 
? 11 T N N 
? 11 W N N 
? 11 Z N N 
? 11 CA N N 
? 11 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 99 B ASP 99 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc2 J MG MG . B MG 601 1_555 K O1B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc3 J MG MG . B MG 601 1_555 K O3B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc4 J MG MG . B MG 601 1_555 K O3A ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? 
metalc ? metalc5 J MG MG . B MG 601 1_555 K O1A ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? 
metalc ? metalc6 C OD1 ASP 92 C ASP 92 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc7 M MG MG . C MG 601 1_555 N O1B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc8 M MG MG . C MG 601 1_555 N O3B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc9 M MG MG . C MG 601 1_555 N O1A ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc10 D OD2 ASP 104 D ASP 104 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc11 P MG MG . D MG 601 1_555 Q O1A ADP . D ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc12 P MG MG . D MG 601 1_555 Q O1B ADP . D ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc13 S MG MG . E MG 601 1_555 T O1A ADP . E ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc14 S MG MG . E MG 601 1_555 T O1B ADP . E ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc15 S MG MG . E MG 601 1_555 T O3A ADP . E ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc16 F OD1 ASP 104 F ASP 104 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc17 V MG MG . F MG 601 1_555 W O1B ADP . F ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc18 V MG MG . F MG 601 1_555 W O3B ADP . F ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc19 V MG MG . F MG 601 1_555 W O1A ADP . F ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc20 G OD1 ASP 88 G ASP 88 1_555 Y MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc21 Y MG MG . G MG 601 1_555 Z O1B ADP . G ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc22 Y MG MG . G MG 601 1_555 Z O3B ADP . G ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? 
metalc ? metalc23 Y MG MG . G MG 601 1_555 Z O1A ADP . G ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc24 H OD1 ASP 93 H ASP 93 1_555 BA MG MG . H MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc25 BA MG MG . H MG 601 1_555 CA O1B ADP . H ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc26 BA MG MG . H MG 601 1_555 CA O1A ADP . H ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc27 I OD1 ASP 90 I ASP 90 1_555 EA MG MG . I MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc28 I OD2 ASP 90 I ASP 90 1_555 EA MG MG . I MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc29 EA MG MG . I MG 601 1_555 FA O1B ADP . I ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc30 EA MG MG . I MG 601 1_555 FA O1A ADP . I ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7TTT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 10 MG B 1 601 601 MG MG . 
K 11 ADP B 1 602 602 ADP ADP . 
L 12 AF3 B 1 603 603 AF3 AF3 . 
M 10 MG C 1 601 611 MG MG . 
N 11 ADP C 1 602 612 ADP ADP . 
O 12 AF3 C 1 603 613 AF3 AF3 . 
P 10 MG D 1 601 601 MG MG . 
Q 11 ADP D 1 602 602 ADP ADP . 
R 12 AF3 D 1 603 603 AF3 AF3 . 
S 10 MG E 1 601 601 MG MG . 
T 11 ADP E 1 602 602 ADP ADP . 
U 12 AF3 E 1 603 603 AF3 AF3 . 
V 10 MG F 1 601 601 MG MG . 
W 11 ADP F 1 602 602 ADP ADP . 
X 12 AF3 F 1 603 603 AF3 AF3 . 
Y 10 MG G 1 601 601 MG MG . 
Z 11 ADP G 1 602 602 ADP ADP . 
AA 12 AF3 G 1 603 603 AF3 AF3 . 
BA 10 MG H 1 601 601 MG MG . 
CA 11 ADP H 1 602 602 ADP ADP . 
DA 12 AF3 H 1 603 603 AF3 AF3 . 
EA 10 MG I 1 601 601 MG MG . 
FA 11 ADP I 1 602 602 ADP ADP . 
GA 12 AF3 I 1 603 603 AF3 AF3 . 
HA 13 HOH B 1 701 701 HOH HOH . 
IA 13 HOH C 1 701 711 HOH HOH . 
JA 13 HOH D 1 701 701 HOH HOH . 
KA 13 HOH E 1 701 701 HOH HOH . 
LA 13 HOH F 1 701 701 HOH HOH . 
MA 13 HOH G 1 701 701 HOH HOH . 
NA 13 HOH H 1 701 701 HOH HOH . 
OA 13 HOH I 1 701 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . Q 11 223.428 204.988 151.875 1 85.52 ? PB ADP 602 D 1 
HETATM 2 O O1B ADP . . . Q 11 224.403 205.138 150.738 1 92.26 ? O1B ADP 602 D 1 
HETATM 3 O O2B ADP . . . Q 11 223.471 206.089 152.901 1 80.1 ? O2B ADP 602 D 1 
HETATM 4 O O3B ADP . . . Q 11 222.042 204.589 151.445 1 79.27 ? O3B ADP 602 D 1 
HETATM 5 P PA ADP . . . Q 11 225.488 203.373 152.956 1 85.93 ? PA ADP 602 D 1 
HETATM 6 O O1A ADP . . . Q 11 226.208 203.192 151.645 1 86.36 ? O1A ADP 602 D 1 
HETATM 7 O O2A ADP . . . Q 11 225.5 202.282 153.992 1 87.09 ? O2A ADP 602 D 1 
HETATM 8 O O3A ADP . . . Q 11 223.94 203.681 152.654 1 85.84 ? O3A ADP 602 D 1 
HETATM 9 O O5' ADP . . . Q 11 226.061 204.691 153.675 1 79.03 ? O5' ADP 602 D 1 
HETATM 10 C C5' ADP . . . Q 11 226.689 205.724 152.923 1 85.44 ? C5' ADP 602 D 1 
HETATM 11 C C4' ADP . . . Q 11 227.644 206.515 153.805 1 87.35 ? C4' ADP 602 D 1 
HETATM 12 O O4' ADP . . . Q 11 228.856 205.785 154 1 84.19 ? O4' ADP 602 D 1 
HETATM 13 C C3' ADP . . . Q 11 228.026 207.826 153.145 1 83.42 ? C3' ADP 602 D 1 
HETATM 14 O O3' ADP . . . Q 11 227.615 208.909 153.979 1 82.05 ? O3' ADP 602 D 1 
HETATM 15 C C2' ADP . . . Q 11 229.534 207.818 153.052 1 82.17 ? C2' ADP 602 D 1 
HETATM 16 O O2' ADP . . . Q 11 230.056 209.054 153.536 1 94.13 ? O2' ADP 602 D 1 
HETATM 17 C C1' ADP . . . Q 11 229.968 206.677 153.944 1 82.77 ? C1' ADP 602 D 1 
HETATM 18 N N9 ADP . . . Q 11 231.171 206.01 153.391 1 83.68 ? N9 ADP 602 D 1 
HETATM 19 C C8 ADP . . . Q 11 231.202 205.172 152.341 1 79.56 ? C8 ADP 602 D 1 
HETATM 20 N N7 ADP . . . Q 11 232.466 204.741 152.103 1 81.42 ? N7 ADP 602 D 1 
HETATM 21 C C5 ADP . . . Q 11 233.271 205.312 153.017 1 85.73 ? C5 ADP 602 D 1 
HETATM 22 C C6 ADP . . . Q 11 234.716 205.286 153.338 1 87.9 ? C6 ADP 602 D 1 
HETATM 23 N N6 ADP . . . Q 11 235.584 204.544 152.614 1 86.94 ? N6 ADP 602 D 1 
HETATM 24 N N1 ADP . . . Q 11 235.144 206.028 154.378 1 87.07 ? N1 ADP 602 D 1 
HETATM 25 C C2 ADP . . . Q 11 234.298 206.772 155.109 1 84.75 ? C2 ADP 602 D 1 
HETATM 26 N N3 ADP . . . Q 11 232.977 206.841 154.876 1 83.98 ? N3 ADP 602 D 1 
HETATM 27 C C4 ADP . . . Q 11 232.411 206.148 153.861 1 86.86 ? C4 ADP 602 D 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#