data_7TTT # _model_server_result.job_id 4TS8Ty6SWS1wup6Mkz28fQ _model_server_result.datetime_utc '2024-11-26 04:09:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ttt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":602}' # _entry.id 7TTT # _exptl.entry_id 7TTT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TTT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 K N N ? 11 N N N ? 11 Q N N ? 11 T N N ? 11 W N N ? 11 Z N N ? 11 CA N N ? 11 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 99 B ASP 99 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc2 J MG MG . B MG 601 1_555 K O1B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc3 J MG MG . B MG 601 1_555 K O3B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc4 J MG MG . B MG 601 1_555 K O3A ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc5 J MG MG . B MG 601 1_555 K O1A ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc6 C OD1 ASP 92 C ASP 92 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 M MG MG . C MG 601 1_555 N O1B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc8 M MG MG . C MG 601 1_555 N O3B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc9 M MG MG . C MG 601 1_555 N O1A ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc10 D OD2 ASP 104 D ASP 104 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc11 P MG MG . D MG 601 1_555 Q O1A ADP . D ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc12 P MG MG . D MG 601 1_555 Q O1B ADP . D ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc13 S MG MG . E MG 601 1_555 T O1A ADP . E ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc14 S MG MG . E MG 601 1_555 T O1B ADP . E ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc15 S MG MG . E MG 601 1_555 T O3A ADP . E ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc16 F OD1 ASP 104 F ASP 104 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc17 V MG MG . F MG 601 1_555 W O1B ADP . F ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc18 V MG MG . F MG 601 1_555 W O3B ADP . F ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc19 V MG MG . F MG 601 1_555 W O1A ADP . F ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc20 G OD1 ASP 88 G ASP 88 1_555 Y MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc21 Y MG MG . G MG 601 1_555 Z O1B ADP . G ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc22 Y MG MG . G MG 601 1_555 Z O3B ADP . G ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc23 Y MG MG . G MG 601 1_555 Z O1A ADP . G ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc24 H OD1 ASP 93 H ASP 93 1_555 BA MG MG . H MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc25 BA MG MG . H MG 601 1_555 CA O1B ADP . H ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc26 BA MG MG . H MG 601 1_555 CA O1A ADP . H ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc27 I OD1 ASP 90 I ASP 90 1_555 EA MG MG . I MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc28 I OD2 ASP 90 I ASP 90 1_555 EA MG MG . I MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc29 EA MG MG . I MG 601 1_555 FA O1B ADP . I ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc30 EA MG MG . I MG 601 1_555 FA O1A ADP . I ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7TTT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 MG B 1 601 601 MG MG . K 11 ADP B 1 602 602 ADP ADP . L 12 AF3 B 1 603 603 AF3 AF3 . M 10 MG C 1 601 611 MG MG . N 11 ADP C 1 602 612 ADP ADP . O 12 AF3 C 1 603 613 AF3 AF3 . P 10 MG D 1 601 601 MG MG . Q 11 ADP D 1 602 602 ADP ADP . R 12 AF3 D 1 603 603 AF3 AF3 . S 10 MG E 1 601 601 MG MG . T 11 ADP E 1 602 602 ADP ADP . U 12 AF3 E 1 603 603 AF3 AF3 . V 10 MG F 1 601 601 MG MG . W 11 ADP F 1 602 602 ADP ADP . X 12 AF3 F 1 603 603 AF3 AF3 . Y 10 MG G 1 601 601 MG MG . Z 11 ADP G 1 602 602 ADP ADP . AA 12 AF3 G 1 603 603 AF3 AF3 . BA 10 MG H 1 601 601 MG MG . CA 11 ADP H 1 602 602 ADP ADP . DA 12 AF3 H 1 603 603 AF3 AF3 . EA 10 MG I 1 601 601 MG MG . FA 11 ADP I 1 602 602 ADP ADP . GA 12 AF3 I 1 603 603 AF3 AF3 . HA 13 HOH B 1 701 701 HOH HOH . IA 13 HOH C 1 701 711 HOH HOH . JA 13 HOH D 1 701 701 HOH HOH . KA 13 HOH E 1 701 701 HOH HOH . LA 13 HOH F 1 701 701 HOH HOH . MA 13 HOH G 1 701 701 HOH HOH . NA 13 HOH H 1 701 701 HOH HOH . OA 13 HOH I 1 701 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . W 11 205.7 128.727 153.34 1 65.49 ? PB ADP 602 F 1 HETATM 2 O O1B ADP . . . W 11 206.358 127.72 152.435 1 66.67 ? O1B ADP 602 F 1 HETATM 3 O O2B ADP . . . W 11 206.643 129.716 153.97 1 68.32 ? O2B ADP 602 F 1 HETATM 4 O O3B ADP . . . W 11 204.44 129.335 152.783 1 68.49 ? O3B ADP 602 F 1 HETATM 5 P PA ADP . . . W 11 204.126 126.674 154.409 1 78.12 ? PA ADP 602 F 1 HETATM 6 O O1A ADP . . . W 11 203.686 126.639 152.97 1 79.6 ? O1A ADP 602 F 1 HETATM 7 O O2A ADP . . . W 11 203.119 126.817 155.519 1 76.98 ? O2A ADP 602 F 1 HETATM 8 O O3A ADP . . . W 11 205.192 127.86 154.59 1 69.91 ? O3A ADP 602 F 1 HETATM 9 O O5' ADP . . . W 11 205.029 125.377 154.695 1 68.77 ? O5' ADP 602 F 1 HETATM 10 C C5' ADP . . . W 11 206.421 125.546 154.931 1 68.34 ? C5' ADP 602 F 1 HETATM 11 C C4' ADP . . . W 11 207.059 124.268 155.458 1 67.9 ? C4' ADP 602 F 1 HETATM 12 O O4' ADP . . . W 11 206.108 123.22 155.625 1 75.8 ? O4' ADP 602 F 1 HETATM 13 C C3' ADP . . . W 11 208.122 123.729 154.518 1 65.22 ? C3' ADP 602 F 1 HETATM 14 O O3' ADP . . . W 11 209.413 123.995 155.064 1 63.98 ? O3' ADP 602 F 1 HETATM 15 C C2' ADP . . . W 11 207.899 122.235 154.476 1 66.27 ? C2' ADP 602 F 1 HETATM 16 O O2' ADP . . . W 11 209.095 121.567 154.871 1 80.07 ? O2' ADP 602 F 1 HETATM 17 C C1' ADP . . . W 11 206.808 121.984 155.498 1 73.81 ? C1' ADP 602 F 1 HETATM 18 N N9 ADP . . . W 11 205.915 120.871 155.097 1 67.98 ? N9 ADP 602 F 1 HETATM 19 C C8 ADP . . . W 11 205.035 120.875 154.083 1 65.29 ? C8 ADP 602 F 1 HETATM 20 N N7 ADP . . . W 11 204.384 119.688 154.002 1 66.5 ? N7 ADP 602 F 1 HETATM 21 C C5 ADP . . . W 11 204.853 118.901 154.983 1 63.42 ? C5 ADP 602 F 1 HETATM 22 C C6 ADP . . . W 11 204.599 117.527 155.464 1 70.17 ? C6 ADP 602 F 1 HETATM 23 N N6 ADP . . . W 11 203.684 116.736 154.857 1 72.61 ? N6 ADP 602 F 1 HETATM 24 N N1 ADP . . . W 11 205.308 117.087 156.524 1 71.82 ? N1 ADP 602 F 1 HETATM 25 C C2 ADP . . . W 11 206.217 117.863 157.134 1 70.26 ? C2 ADP 602 F 1 HETATM 26 N N3 ADP . . . W 11 206.498 119.118 156.75 1 67.88 ? N3 ADP 602 F 1 HETATM 27 C C4 ADP . . . W 11 205.863 119.684 155.699 1 64.34 ? C4 ADP 602 F 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #