data_7TTZ # _model_server_result.job_id cz64Lhiu6cAB7ym91bDcfQ _model_server_result.datetime_utc '2024-10-20 03:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ttz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7TTZ # _exptl.entry_id 7TTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7TTZ _cell.length_a 135.505 _cell.length_b 165.447 _cell.length_c 46.434 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 242 1_555 A SG CYS 68 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 33 A CYS 266 1_555 A SG CYS 90 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 66 A CYS 299 1_555 B SG CYS 66 B CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 136 A CYS 369 1_555 A SG CYS 199 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 9 B CYS 242 1_555 B SG CYS 68 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 33 B CYS 266 1_555 B SG CYS 90 B CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 136 B CYS 369 1_555 B SG CYS 199 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 30 A ASN 263 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 299 n n C1 O1 NAG sing 300 n n C1 O5 NAG sing 301 n n C1 H1 NAG sing 302 n n C2 C3 NAG sing 303 n n C2 N2 NAG sing 304 n n C2 H2 NAG sing 305 n n C3 C4 NAG sing 306 n n C3 O3 NAG sing 307 n n C3 H3 NAG sing 308 n n C4 C5 NAG sing 309 n n C4 O4 NAG sing 310 n n C4 H4 NAG sing 311 n n C5 C6 NAG sing 312 n n C5 O5 NAG sing 313 n n C5 H5 NAG sing 314 n n C6 O6 NAG sing 315 n n C6 H61 NAG sing 316 n n C6 H62 NAG sing 317 n n C7 C8 NAG sing 318 n n C7 N2 NAG sing 319 n n C7 O7 NAG doub 320 n n C8 H81 NAG sing 321 n n C8 H82 NAG sing 322 n n C8 H83 NAG sing 323 n n N2 HN2 NAG sing 324 n n O1 HO1 NAG sing 325 n n O3 HO3 NAG sing 326 n n O4 HO4 NAG sing 327 n n O6 HO6 NAG sing 328 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7TTZ _atom_sites.fract_transf_matrix[1][1] 0.00738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 501 501 NAG NAG . F 5 1PG A 1 502 5 1PG 1PG . G 5 1PG A 1 503 6 1PG 1PG . H 5 1PG A 1 504 7 1PG 1PG . I 6 GOL A 1 505 2 GOL GOL . J 5 1PG B 1 501 1 1PG 1PG . K 5 1PG B 1 502 2 1PG 1PG . L 7 EDO B 1 503 3 EDO EDO . M 7 EDO B 1 504 4 EDO EDO . N 5 1PG C 1 301 4 1PG 1PG . O 6 GOL C 1 302 1 GOL GOL . P 5 1PG D 1 301 3 1PG 1PG . Q 7 EDO D 1 302 5 EDO EDO . R 7 EDO D 1 303 6 EDO EDO . S 8 HOH A 1 601 175 HOH HOH . S 8 HOH A 2 602 117 HOH HOH . S 8 HOH A 3 603 75 HOH HOH . S 8 HOH A 4 604 79 HOH HOH . S 8 HOH A 5 605 156 HOH HOH . S 8 HOH A 6 606 42 HOH HOH . S 8 HOH A 7 607 159 HOH HOH . S 8 HOH A 8 608 78 HOH HOH . S 8 HOH A 9 609 52 HOH HOH . S 8 HOH A 10 610 147 HOH HOH . S 8 HOH A 11 611 63 HOH HOH . S 8 HOH A 12 612 27 HOH HOH . S 8 HOH A 13 613 13 HOH HOH . S 8 HOH A 14 614 29 HOH HOH . S 8 HOH A 15 615 4 HOH HOH . S 8 HOH A 16 616 66 HOH HOH . S 8 HOH A 17 617 25 HOH HOH . S 8 HOH A 18 618 51 HOH HOH . S 8 HOH A 19 619 77 HOH HOH . S 8 HOH A 20 620 45 HOH HOH . S 8 HOH A 21 621 113 HOH HOH . S 8 HOH A 22 622 130 HOH HOH . S 8 HOH A 23 623 121 HOH HOH . S 8 HOH A 24 624 160 HOH HOH . S 8 HOH A 25 625 109 HOH HOH . S 8 HOH A 26 626 87 HOH HOH . S 8 HOH A 27 627 111 HOH HOH . S 8 HOH A 28 628 152 HOH HOH . S 8 HOH A 29 629 161 HOH HOH . S 8 HOH A 30 630 59 HOH HOH . S 8 HOH A 31 631 162 HOH HOH . T 8 HOH B 1 601 112 HOH HOH . T 8 HOH B 2 602 26 HOH HOH . T 8 HOH B 3 603 177 HOH HOH . T 8 HOH B 4 604 11 HOH HOH . T 8 HOH B 5 605 36 HOH HOH . T 8 HOH B 6 606 18 HOH HOH . T 8 HOH B 7 607 47 HOH HOH . T 8 HOH B 8 608 94 HOH HOH . T 8 HOH B 9 609 40 HOH HOH . T 8 HOH B 10 610 60 HOH HOH . T 8 HOH B 11 611 23 HOH HOH . T 8 HOH B 12 612 102 HOH HOH . T 8 HOH B 13 613 118 HOH HOH . T 8 HOH B 14 614 132 HOH HOH . T 8 HOH B 15 615 17 HOH HOH . T 8 HOH B 16 616 85 HOH HOH . T 8 HOH B 17 617 138 HOH HOH . T 8 HOH B 18 618 88 HOH HOH . T 8 HOH B 19 619 115 HOH HOH . T 8 HOH B 20 620 76 HOH HOH . T 8 HOH B 21 621 31 HOH HOH . T 8 HOH B 22 622 34 HOH HOH . T 8 HOH B 23 623 120 HOH HOH . T 8 HOH B 24 624 44 HOH HOH . T 8 HOH B 25 625 41 HOH HOH . T 8 HOH B 26 626 62 HOH HOH . T 8 HOH B 27 627 54 HOH HOH . T 8 HOH B 28 628 33 HOH HOH . T 8 HOH B 29 629 7 HOH HOH . T 8 HOH B 30 630 90 HOH HOH . T 8 HOH B 31 631 89 HOH HOH . T 8 HOH B 32 632 37 HOH HOH . T 8 HOH B 33 633 83 HOH HOH . T 8 HOH B 34 634 103 HOH HOH . T 8 HOH B 35 635 46 HOH HOH . T 8 HOH B 36 636 8 HOH HOH . T 8 HOH B 37 637 110 HOH HOH . T 8 HOH B 38 638 49 HOH HOH . T 8 HOH B 39 639 38 HOH HOH . T 8 HOH B 40 640 137 HOH HOH . T 8 HOH B 41 641 95 HOH HOH . T 8 HOH B 42 642 135 HOH HOH . T 8 HOH B 43 643 131 HOH HOH . T 8 HOH B 44 644 125 HOH HOH . T 8 HOH B 45 645 133 HOH HOH . T 8 HOH B 46 646 171 HOH HOH . T 8 HOH B 47 647 82 HOH HOH . T 8 HOH B 48 648 96 HOH HOH . T 8 HOH B 49 649 141 HOH HOH . T 8 HOH B 50 650 69 HOH HOH . T 8 HOH B 51 651 70 HOH HOH . T 8 HOH B 52 652 116 HOH HOH . T 8 HOH B 53 653 172 HOH HOH . T 8 HOH B 54 654 165 HOH HOH . T 8 HOH B 55 655 163 HOH HOH . T 8 HOH B 56 656 92 HOH HOH . T 8 HOH B 57 657 106 HOH HOH . T 8 HOH B 58 658 164 HOH HOH . T 8 HOH B 59 659 71 HOH HOH . T 8 HOH B 60 660 105 HOH HOH . T 8 HOH B 61 661 73 HOH HOH . U 8 HOH C 1 401 91 HOH HOH . U 8 HOH C 2 402 148 HOH HOH . U 8 HOH C 3 403 50 HOH HOH . U 8 HOH C 4 404 101 HOH HOH . U 8 HOH C 5 405 65 HOH HOH . U 8 HOH C 6 406 3 HOH HOH . U 8 HOH C 7 407 39 HOH HOH . U 8 HOH C 8 408 93 HOH HOH . U 8 HOH C 9 409 143 HOH HOH . U 8 HOH C 10 410 2 HOH HOH . U 8 HOH C 11 411 10 HOH HOH . U 8 HOH C 12 412 67 HOH HOH . U 8 HOH C 13 413 22 HOH HOH . U 8 HOH C 14 414 124 HOH HOH . U 8 HOH C 15 415 53 HOH HOH . U 8 HOH C 16 416 98 HOH HOH . U 8 HOH C 17 417 100 HOH HOH . U 8 HOH C 18 418 56 HOH HOH . U 8 HOH C 19 419 32 HOH HOH . U 8 HOH C 20 420 61 HOH HOH . U 8 HOH C 21 421 35 HOH HOH . U 8 HOH C 22 422 139 HOH HOH . U 8 HOH C 23 423 108 HOH HOH . U 8 HOH C 24 424 80 HOH HOH . U 8 HOH C 25 425 150 HOH HOH . U 8 HOH C 26 426 99 HOH HOH . U 8 HOH C 27 427 170 HOH HOH . U 8 HOH C 28 428 55 HOH HOH . U 8 HOH C 29 429 173 HOH HOH . V 8 HOH D 1 401 19 HOH HOH . V 8 HOH D 2 402 86 HOH HOH . V 8 HOH D 3 403 20 HOH HOH . V 8 HOH D 4 404 28 HOH HOH . V 8 HOH D 5 405 153 HOH HOH . V 8 HOH D 6 406 5 HOH HOH . V 8 HOH D 7 407 12 HOH HOH . V 8 HOH D 8 408 43 HOH HOH . V 8 HOH D 9 409 84 HOH HOH . V 8 HOH D 10 410 107 HOH HOH . V 8 HOH D 11 411 127 HOH HOH . V 8 HOH D 12 412 21 HOH HOH . V 8 HOH D 13 413 6 HOH HOH . V 8 HOH D 14 414 134 HOH HOH . V 8 HOH D 15 415 122 HOH HOH . V 8 HOH D 16 416 48 HOH HOH . V 8 HOH D 17 417 68 HOH HOH . V 8 HOH D 18 418 142 HOH HOH . V 8 HOH D 19 419 1 HOH HOH . V 8 HOH D 20 420 81 HOH HOH . V 8 HOH D 21 421 16 HOH HOH . V 8 HOH D 22 422 24 HOH HOH . V 8 HOH D 23 423 158 HOH HOH . V 8 HOH D 24 424 57 HOH HOH . V 8 HOH D 25 425 58 HOH HOH . V 8 HOH D 26 426 15 HOH HOH . V 8 HOH D 27 427 30 HOH HOH . V 8 HOH D 28 428 74 HOH HOH . V 8 HOH D 29 429 9 HOH HOH . V 8 HOH D 30 430 169 HOH HOH . V 8 HOH D 31 431 104 HOH HOH . V 8 HOH D 32 432 129 HOH HOH . V 8 HOH D 33 433 14 HOH HOH . V 8 HOH D 34 434 140 HOH HOH . V 8 HOH D 35 435 167 HOH HOH . V 8 HOH D 36 436 168 HOH HOH . V 8 HOH D 37 437 176 HOH HOH . V 8 HOH D 38 438 157 HOH HOH . V 8 HOH D 39 439 174 HOH HOH . V 8 HOH D 40 440 154 HOH HOH . V 8 HOH D 41 441 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 -3.304 56.458 22.97 1 100.21 ? C1 NAG 501 A 1 HETATM 2 C C2 NAG . . . E 4 -2.449 56.338 24.233 1 108.04 ? C2 NAG 501 A 1 HETATM 3 C C3 NAG . . . E 4 -1.071 55.781 23.882 1 104.69 ? C3 NAG 501 A 1 HETATM 4 C C4 NAG . . . E 4 -1.199 54.474 23.11 1 112.66 ? C4 NAG 501 A 1 HETATM 5 C C5 NAG . . . E 4 -2.099 54.668 21.893 1 107.76 ? C5 NAG 501 A 1 HETATM 6 C C6 NAG . . . E 4 -2.348 53.387 21.13 1 97.04 ? C6 NAG 501 A 1 HETATM 7 C C7 NAG . . . E 4 -3.304 58.182 25.607 1 107.11 ? C7 NAG 501 A 1 HETATM 8 C C8 NAG . . . E 4 -2.999 59.519 26.209 1 107.63 ? C8 NAG 501 A 1 HETATM 9 N N2 NAG . . . E 4 -2.321 57.626 24.893 1 110.4 ? N2 NAG 501 A 1 HETATM 10 O O3 NAG . . . E 4 -0.319 55.572 25.071 1 104.42 ? O3 NAG 501 A 1 HETATM 11 O O4 NAG . . . E 4 0.085 54.044 22.673 1 106.18 ? O4 NAG 501 A 1 HETATM 12 O O5 NAG . . . E 4 -3.378 55.169 22.31 1 100.96 ? O5 NAG 501 A 1 HETATM 13 O O6 NAG . . . E 4 -1.252 52.489 21.242 1 102.98 ? O6 NAG 501 A 1 HETATM 14 O O7 NAG . . . E 4 -4.389 57.629 25.76 1 98.97 ? O7 NAG 501 A 1 HETATM 15 H H2 NAG . . . E 4 -2.883 55.712 24.843 1 129.56 ? H2 NAG 501 A 1 HETATM 16 H H3 NAG . . . E 4 -0.605 56.433 23.325 1 125.54 ? H3 NAG 501 A 1 HETATM 17 H H4 NAG . . . E 4 -1.588 53.795 23.693 1 135.1 ? H4 NAG 501 A 1 HETATM 18 H H5 NAG . . . E 4 -1.687 55.317 21.292 1 129.22 ? H5 NAG 501 A 1 HETATM 19 H H61 NAG . . . E 4 -2.491 53.599 20.188 1 116.36 ? H61 NAG 501 A 1 HETATM 20 H H62 NAG . . . E 4 -3.149 52.956 21.485 1 116.36 ? H62 NAG 501 A 1 HETATM 21 H H81 NAG . . . E 4 -3.811 59.891 26.604 1 129.07 ? H81 NAG 501 A 1 HETATM 22 H H82 NAG . . . E 4 -2.671 60.122 25.515 1 129.07 ? H82 NAG 501 A 1 HETATM 23 H H83 NAG . . . E 4 -2.318 59.418 26.901 1 129.07 ? H83 NAG 501 A 1 HETATM 24 H HN2 NAG . . . E 4 -1.532 58.077 24.816 1 132.39 ? HN2 NAG 501 A 1 HETATM 25 H HO3 NAG . . . E 4 0.479 55.247 24.855 1 125.22 ? HO3 NAG 501 A 1 HETATM 26 H HO4 NAG . . . E 4 0.076 53.164 22.553 1 127.33 ? HO4 NAG 501 A 1 HETATM 27 H HO6 NAG . . . E 4 -1.424 51.752 20.776 1 123.48 ? HO6 NAG 501 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #